Wall clock time and date at job start Tue Mar 31 2020 18:47:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30670 * 1
3 3 Si 1.86809 * 120.00076 * 2 1
4 4 H 1.48495 * 109.47230 * 240.00039 * 3 2 1
5 5 H 1.48496 * 109.47100 * 0.02562 * 3 2 1
6 6 H 1.48503 * 109.46685 * 120.00046 * 3 2 1
7 7 C 1.40043 * 120.00311 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00752 * 180.02562 * 7 2 1
9 9 C 1.46379 * 119.99813 * 359.97438 * 7 2 1
10 10 O 1.21692 * 119.99894 * 10.35859 * 9 7 2
11 11 N 1.34786 * 120.00078 * 190.35843 * 9 7 2
12 12 C 1.46921 * 120.62649 * 3.48306 * 11 9 7
13 13 C 1.53190 * 108.89202 * 233.68014 * 12 11 9
14 14 C 1.53048 * 109.31396 * 305.30086 * 13 12 11
15 15 C 1.53036 * 109.53923 * 61.36493 * 14 13 12
16 16 C 1.47202 * 120.81053 * 183.62839 * 11 9 7
17 17 H 1.08992 * 109.56127 * 246.15250 * 16 11 9
18 18 C 1.50697 * 109.65357 * 6.46721 * 16 11 9
19 19 N 1.30272 * 126.28629 * 57.77297 * 18 16 11
20 20 N 1.28669 * 109.38072 * 179.97438 * 19 18 16
21 21 C 1.30273 * 109.38147 * 359.97438 * 20 19 18
22 22 C 1.50704 * 126.27953 * 180.02562 * 21 20 19
23 23 C 1.53172 * 109.54584 * 59.53412 * 22 21 20
24 24 C 1.53092 * 109.16228 * 183.15603 * 23 22 21
25 25 O 1.42902 * 109.42028 * 57.60301 * 24 23 22
26 26 C 1.42903 * 114.09593 * 298.84586 * 25 24 23
27 27 C 1.53094 * 109.41597 * 61.15665 * 26 25 24
28 28 O 1.34365 * 107.43591 * 359.76405 * 21 20 19
29 29 H 0.96998 * 119.99864 * 359.97438 * 1 2 3
30 30 H 1.09004 * 109.58347 * 113.82831 * 12 11 9
31 31 H 1.08996 * 109.59065 * 353.54152 * 12 11 9
32 32 H 1.09004 * 109.50186 * 65.24987 * 13 12 11
33 33 H 1.09004 * 109.50186 * 185.31783 * 13 12 11
34 34 H 1.09006 * 109.45808 * 181.38727 * 14 13 12
35 35 H 1.08998 * 109.45797 * 301.35117 * 14 13 12
36 36 H 1.08999 * 109.50063 * 58.58406 * 15 14 13
37 37 H 1.08997 * 109.49641 * 178.65309 * 15 14 13
38 38 H 1.09002 * 109.53916 * 179.80184 * 22 21 20
39 39 H 1.09006 * 109.51953 * 303.05219 * 23 22 21
40 40 H 1.08993 * 109.52670 * 63.24275 * 23 22 21
41 41 H 1.08997 * 109.47503 * 297.62066 * 24 23 22
42 42 H 1.08997 * 109.48388 * 177.58877 * 24 23 22
43 43 H 1.08994 * 109.48395 * 301.17277 * 26 25 24
44 44 H 1.09005 * 109.48789 * 181.14505 * 26 25 24
45 45 H 1.08998 * 109.51933 * 182.48507 * 27 26 25
46 46 H 1.09002 * 109.57539 * 62.32639 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2408 1.6178 0.0000
4 1 3.0945 1.6965 -1.2125
5 1 1.2758 2.7465 0.0006
6 1 3.0945 1.6964 1.2125
7 6 2.0070 -1.2128 -0.0005
8 1 3.0870 -1.2129 -0.0001
9 6 1.2751 -2.4805 -0.0005
10 8 0.0730 -2.4890 -0.1896
11 7 1.9327 -3.6383 0.2088
12 6 3.3699 -3.6382 0.5138
13 6 4.0866 -4.5640 -0.4741
14 6 3.4379 -5.9495 -0.4314
15 6 1.9698 -5.8404 -0.8498
16 6 1.2291 -4.9291 0.1341
17 1 1.2122 -5.3931 1.1201
18 6 -0.1826 -4.7098 -0.3454
19 7 -0.5379 -4.1457 -1.4647
20 7 -1.8219 -4.1281 -1.5453
21 6 -2.3295 -4.6809 -0.4804
22 6 -3.7957 -4.8608 -0.1818
23 6 -4.4423 -5.7090 -1.2812
24 6 -5.9451 -5.8203 -1.0115
25 8 -6.5155 -4.5113 -0.9529
26 6 -5.9828 -3.6888 0.0872
27 6 -4.4814 -3.4918 -0.1384
28 8 -1.3059 -5.0664 0.3000
29 1 -0.4850 0.8400 0.0004
30 1 3.5275 -3.9971 1.5310
31 1 3.7637 -2.6264 0.4181
32 1 4.0047 -4.1548 -1.4811
33 1 5.1382 -4.6455 -0.1990
34 1 3.9618 -6.6170 -1.1156
35 1 3.4981 -6.3475 0.5815
36 1 1.9078 -5.4191 -1.8532
37 1 1.5149 -6.8308 -0.8422
38 1 -3.9132 -5.3582 0.7810
39 1 -4.2801 -5.2353 -2.2494
40 1 -3.9977 -6.7042 -1.2824
41 1 -6.1072 -6.3303 -0.0620
42 1 -6.4175 -6.3870 -1.8139
43 1 -6.1454 -4.1709 1.0511
44 1 -6.4822 -2.7200 0.0764
45 1 -4.0649 -2.9014 0.6777
46 1 -4.3191 -2.9730 -1.0831
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001412124508.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:47:36
Heat of formation + Delta-G solvation = -57.513853 kcal
Electronic energy + Delta-G solvation = -30578.033092 eV
Core-core repulsion = 26469.085370 eV
Total energy + Delta-G solvation = -4108.947722 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-44.94120 -40.56790 -40.26449 -37.68724 -36.86788 -35.74962 -34.74895 -33.45870
-33.18872 -32.16605 -30.38710 -28.54559 -26.89682 -26.11368 -24.82732 -24.60808
-23.60456 -23.16207 -22.07476 -21.24867 -20.40114 -18.72852 -18.29021 -18.12166
-17.57911 -17.31275 -16.94032 -16.47914 -16.27116 -15.92592 -15.77669 -15.49031
-15.36337 -14.94006 -14.81444 -14.59181 -14.45144 -14.33114 -13.79875 -13.61839
-13.42674 -13.10380 -13.01164 -12.76946 -12.70620 -12.57066 -12.53743 -12.40116
-12.29845 -12.12674 -11.99077 -11.82615 -11.65843 -11.53674 -11.41272 -11.34085
-10.95316 -10.67855 -10.64534 -9.22422 -9.13450 -8.26654 -6.83878 0.41917
1.34336 1.36234 1.38827 1.48795 1.76340 2.19180 2.45462 2.72237
2.85047 2.97473 3.45045 3.54103 3.63556 3.75787 3.78158 3.91038
3.93004 3.98647 4.05010 4.21717 4.25410 4.29042 4.32703 4.44662
4.55436 4.59043 4.65181 4.69073 4.76993 4.78813 4.87549 4.92223
4.96796 4.98058 5.02968 5.04335 5.10989 5.18038 5.22353 5.23664
5.38145 5.52880 5.69161 6.08100 6.21329 6.25411 6.86482 7.33964
7.65595 8.43757 8.63958
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.011170 B = 0.004311 C = 0.003229
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2506.028956 B = 6493.086557 C = 8668.014940
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.823 5.823
2 C 0.032 3.968
3 Si 0.991 3.009
4 H -0.258 1.258
5 H -0.280 1.280
6 H -0.248 1.248
7 C -0.565 4.565
8 H 0.093 0.907
9 C 0.540 3.460
10 O -0.593 6.593
11 N -0.640 5.640
12 C 0.116 3.884
13 C -0.131 4.131
14 C -0.103 4.103
15 C -0.114 4.114
16 C 0.242 3.758
17 H 0.101 0.899
18 C 0.195 3.805
19 N -0.285 5.285
20 N -0.308 5.308
21 C 0.136 3.864
22 C 0.020 3.980
23 C -0.140 4.140
24 C 0.067 3.933
25 O -0.398 6.398
26 C 0.075 3.925
27 C -0.144 4.144
28 O -0.243 6.243
29 H 0.269 0.731
30 H 0.072 0.928
31 H 0.082 0.918
32 H 0.045 0.955
33 H 0.104 0.896
34 H 0.092 0.908
35 H 0.086 0.914
36 H 0.049 0.951
37 H 0.091 0.909
38 H 0.121 0.879
39 H 0.060 0.940
40 H 0.093 0.907
41 H 0.080 0.920
42 H 0.120 0.880
43 H 0.081 0.919
44 H 0.108 0.892
45 H 0.061 0.939
46 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.418 -14.450 3.855 15.022
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.452 5.452
2 C -0.183 4.183
3 Si 0.811 3.189
4 H -0.182 1.182
5 H -0.205 1.205
6 H -0.172 1.172
7 C -0.602 4.602
8 H 0.111 0.889
9 C 0.345 3.655
10 O -0.476 6.476
11 N -0.380 5.380
12 C -0.006 4.006
13 C -0.170 4.170
14 C -0.140 4.140
15 C -0.153 4.153
16 C 0.136 3.864
17 H 0.118 0.882
18 C -0.014 4.014
19 N -0.132 5.132
20 N -0.155 5.155
21 C -0.075 4.075
22 C 0.000 4.000
23 C -0.178 4.178
24 C -0.010 4.010
25 O -0.317 6.317
26 C -0.002 4.002
27 C -0.183 4.183
28 O -0.124 6.124
29 H 0.079 0.921
30 H 0.090 0.910
31 H 0.100 0.900
32 H 0.064 0.936
33 H 0.122 0.878
34 H 0.111 0.889
35 H 0.105 0.895
36 H 0.067 0.933
37 H 0.110 0.890
38 H 0.139 0.861
39 H 0.078 0.922
40 H 0.112 0.888
41 H 0.099 0.901
42 H 0.137 0.863
43 H 0.099 0.901
44 H 0.126 0.874
45 H 0.080 0.920
46 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -2.265 -13.697 2.485 14.104
hybrid contribution 0.481 0.908 1.071 1.484
sum -1.784 -12.789 3.556 13.394
Atomic orbital electron populations
1.70184 1.09485 1.28523 1.37051 1.26904 0.95376 1.04755 0.91269
0.85164 0.78257 0.75129 0.80348 1.18231 1.20532 1.17153 1.21393
0.94634 0.89572 1.54571 0.88876 1.18635 0.86859 0.83922 0.76043
1.90633 1.16871 1.85074 1.55012 1.48331 1.10365 1.02926 1.76357
1.21763 0.78602 1.01682 0.98518 1.21952 1.00652 0.95369 0.98996
1.21479 0.92017 0.97107 1.03420 1.21920 0.97785 0.98222 0.97363
1.19471 0.79406 0.87582 0.99934 0.88183 1.27623 0.90529 0.94077
0.89213 1.74130 1.04125 1.13777 1.21212 1.73983 1.02044 1.16874
1.22613 1.28204 0.93557 0.98380 0.87327 1.19874 0.78769 0.98790
1.02564 1.22264 0.97952 1.00289 0.97306 1.22769 0.89977 0.84183
1.04026 1.87926 1.62996 1.26038 1.54772 1.22611 0.89729 0.96595
0.91240 1.22212 0.98231 0.95311 1.02536 1.84579 1.15784 1.64792
1.47281 0.92132 0.91013 0.89996 0.93636 0.87753 0.88911 0.89496
0.93261 0.89008 0.86107 0.92157 0.88829 0.90141 0.86256 0.90056
0.87373 0.91989 0.92966
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -51.89 11.88 21.83 0.26 -51.63 16
2 C 0.03 1.80 5.50 85.30 0.47 2.27 16
3 Si 0.99 42.11 29.56 68.60 2.03 44.13 16
4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16
5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16
6 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16
7 C -0.57 -32.08 8.81 24.83 0.22 -31.86 16
8 H 0.09 4.70 5.73 -2.91 -0.02 4.68 16
9 C 0.54 31.26 7.41 86.36 0.64 31.90 16
10 O -0.59 -38.90 10.42 -4.32 -0.05 -38.95 16
11 N -0.64 -28.53 2.98 -803.56 -2.40 -30.93 16
12 C 0.12 3.88 6.33 86.36 0.55 4.42 16
13 C -0.13 -3.32 6.08 30.67 0.19 -3.14 16
14 C -0.10 -2.21 5.88 30.62 0.18 -2.03 16
15 C -0.11 -3.39 5.35 30.67 0.16 -3.23 16
16 C 0.24 9.40 3.43 44.18 0.15 9.55 16
17 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16
18 C 0.20 9.31 4.98 88.34 0.44 9.75 16
19 N -0.28 -15.50 9.74 -165.50 -1.61 -17.11 16
20 N -0.31 -15.92 12.19 -165.50 -2.02 -17.93 16
21 C 0.14 5.90 7.00 88.34 0.62 6.52 16
22 C 0.02 0.61 2.75 -11.42 -0.03 0.58 16
23 C -0.14 -3.45 5.41 30.68 0.17 -3.28 16
24 C 0.07 1.22 6.84 72.01 0.49 1.72 16
25 O -0.40 -9.60 10.77 -148.98 -1.60 -11.20 16
26 C 0.07 1.70 6.84 72.01 0.49 2.19 16
27 C -0.14 -4.60 5.41 30.69 0.17 -4.44 16
28 O -0.24 -10.95 10.87 -3.70 -0.04 -10.99 16
29 H 0.27 15.71 8.29 -92.71 -0.77 14.95 16
30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16
31 H 0.08 2.98 5.33 -2.39 -0.01 2.97 16
32 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16
33 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16
34 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16
35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16
36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16
37 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16
38 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16
39 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16
40 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16
41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16
42 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16
43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
44 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16
45 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16
46 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16
Total: -1.00 -88.54 365.53 0.46 -88.08
By element:
Atomic # 1 Polarization: 24.62 SS G_CDS: 0.99 Total: 25.61 kcal
Atomic # 6 Polarization: 16.02 SS G_CDS: 4.90 Total: 20.93 kcal
Atomic # 7 Polarization: -111.84 SS G_CDS: -5.77 Total: -117.61 kcal
Atomic # 8 Polarization: -59.45 SS G_CDS: -1.69 Total: -61.14 kcal
Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal
Total: -88.54 0.46 -88.08 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001412124508.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.563 kcal
(2) G-P(sol) polarization free energy of solvation -88.540 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.977 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.077 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.514 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds