Wall clock time and date at job start Tue Mar 31 2020 18:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86809 * 120.00076 * 2 1 4 4 H 1.48495 * 109.47230 * 240.00039 * 3 2 1 5 5 H 1.48496 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46685 * 120.00046 * 3 2 1 7 7 C 1.40043 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00752 * 180.02562 * 7 2 1 9 9 C 1.46379 * 119.99813 * 359.97438 * 7 2 1 10 10 O 1.21692 * 119.99894 * 10.35859 * 9 7 2 11 11 N 1.34786 * 120.00078 * 190.35843 * 9 7 2 12 12 C 1.46921 * 120.62649 * 3.48306 * 11 9 7 13 13 C 1.53190 * 108.89202 * 233.68014 * 12 11 9 14 14 C 1.53048 * 109.31396 * 305.30086 * 13 12 11 15 15 C 1.53036 * 109.53923 * 61.36493 * 14 13 12 16 16 C 1.47202 * 120.81053 * 183.62839 * 11 9 7 17 17 H 1.08992 * 109.56127 * 246.15250 * 16 11 9 18 18 C 1.50697 * 109.65357 * 6.46721 * 16 11 9 19 19 N 1.30272 * 126.28629 * 57.77297 * 18 16 11 20 20 N 1.28669 * 109.38072 * 179.97438 * 19 18 16 21 21 C 1.30273 * 109.38147 * 359.97438 * 20 19 18 22 22 C 1.50704 * 126.27953 * 180.02562 * 21 20 19 23 23 C 1.53172 * 109.54584 * 59.53412 * 22 21 20 24 24 C 1.53092 * 109.16228 * 183.15603 * 23 22 21 25 25 O 1.42902 * 109.42028 * 57.60301 * 24 23 22 26 26 C 1.42903 * 114.09593 * 298.84586 * 25 24 23 27 27 C 1.53094 * 109.41597 * 61.15665 * 26 25 24 28 28 O 1.34365 * 107.43591 * 359.76405 * 21 20 19 29 29 H 0.96998 * 119.99864 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.58347 * 113.82831 * 12 11 9 31 31 H 1.08996 * 109.59065 * 353.54152 * 12 11 9 32 32 H 1.09004 * 109.50186 * 65.24987 * 13 12 11 33 33 H 1.09004 * 109.50186 * 185.31783 * 13 12 11 34 34 H 1.09006 * 109.45808 * 181.38727 * 14 13 12 35 35 H 1.08998 * 109.45797 * 301.35117 * 14 13 12 36 36 H 1.08999 * 109.50063 * 58.58406 * 15 14 13 37 37 H 1.08997 * 109.49641 * 178.65309 * 15 14 13 38 38 H 1.09002 * 109.53916 * 179.80184 * 22 21 20 39 39 H 1.09006 * 109.51953 * 303.05219 * 23 22 21 40 40 H 1.08993 * 109.52670 * 63.24275 * 23 22 21 41 41 H 1.08997 * 109.47503 * 297.62066 * 24 23 22 42 42 H 1.08997 * 109.48388 * 177.58877 * 24 23 22 43 43 H 1.08994 * 109.48395 * 301.17277 * 26 25 24 44 44 H 1.09005 * 109.48789 * 181.14505 * 26 25 24 45 45 H 1.08998 * 109.51933 * 182.48507 * 27 26 25 46 46 H 1.09002 * 109.57539 * 62.32639 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0945 1.6965 -1.2125 5 1 1.2758 2.7465 0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0730 -2.4890 -0.1896 11 7 1.9327 -3.6383 0.2088 12 6 3.3699 -3.6382 0.5138 13 6 4.0866 -4.5640 -0.4741 14 6 3.4379 -5.9495 -0.4314 15 6 1.9698 -5.8404 -0.8498 16 6 1.2291 -4.9291 0.1341 17 1 1.2122 -5.3931 1.1201 18 6 -0.1826 -4.7098 -0.3454 19 7 -0.5379 -4.1457 -1.4647 20 7 -1.8219 -4.1281 -1.5453 21 6 -2.3295 -4.6809 -0.4804 22 6 -3.7957 -4.8608 -0.1818 23 6 -4.4423 -5.7090 -1.2812 24 6 -5.9451 -5.8203 -1.0115 25 8 -6.5155 -4.5113 -0.9529 26 6 -5.9828 -3.6888 0.0872 27 6 -4.4814 -3.4918 -0.1384 28 8 -1.3059 -5.0664 0.3000 29 1 -0.4850 0.8400 0.0004 30 1 3.5275 -3.9971 1.5310 31 1 3.7637 -2.6264 0.4181 32 1 4.0047 -4.1548 -1.4811 33 1 5.1382 -4.6455 -0.1990 34 1 3.9618 -6.6170 -1.1156 35 1 3.4981 -6.3475 0.5815 36 1 1.9078 -5.4191 -1.8532 37 1 1.5149 -6.8308 -0.8422 38 1 -3.9132 -5.3582 0.7810 39 1 -4.2801 -5.2353 -2.2494 40 1 -3.9977 -6.7042 -1.2824 41 1 -6.1072 -6.3303 -0.0620 42 1 -6.4175 -6.3870 -1.8139 43 1 -6.1454 -4.1709 1.0511 44 1 -6.4822 -2.7200 0.0764 45 1 -4.0649 -2.9014 0.6777 46 1 -4.3191 -2.9730 -1.0831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412124508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:36 Heat of formation + Delta-G solvation = -57.513853 kcal Electronic energy + Delta-G solvation = -30578.033092 eV Core-core repulsion = 26469.085370 eV Total energy + Delta-G solvation = -4108.947722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.94120 -40.56790 -40.26449 -37.68724 -36.86788 -35.74962 -34.74895 -33.45870 -33.18872 -32.16605 -30.38710 -28.54559 -26.89682 -26.11368 -24.82732 -24.60808 -23.60456 -23.16207 -22.07476 -21.24867 -20.40114 -18.72852 -18.29021 -18.12166 -17.57911 -17.31275 -16.94032 -16.47914 -16.27116 -15.92592 -15.77669 -15.49031 -15.36337 -14.94006 -14.81444 -14.59181 -14.45144 -14.33114 -13.79875 -13.61839 -13.42674 -13.10380 -13.01164 -12.76946 -12.70620 -12.57066 -12.53743 -12.40116 -12.29845 -12.12674 -11.99077 -11.82615 -11.65843 -11.53674 -11.41272 -11.34085 -10.95316 -10.67855 -10.64534 -9.22422 -9.13450 -8.26654 -6.83878 0.41917 1.34336 1.36234 1.38827 1.48795 1.76340 2.19180 2.45462 2.72237 2.85047 2.97473 3.45045 3.54103 3.63556 3.75787 3.78158 3.91038 3.93004 3.98647 4.05010 4.21717 4.25410 4.29042 4.32703 4.44662 4.55436 4.59043 4.65181 4.69073 4.76993 4.78813 4.87549 4.92223 4.96796 4.98058 5.02968 5.04335 5.10989 5.18038 5.22353 5.23664 5.38145 5.52880 5.69161 6.08100 6.21329 6.25411 6.86482 7.33964 7.65595 8.43757 8.63958 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.004311 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.028956 B = 6493.086557 C = 8668.014940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.032 3.968 3 Si 0.991 3.009 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.248 1.248 7 C -0.565 4.565 8 H 0.093 0.907 9 C 0.540 3.460 10 O -0.593 6.593 11 N -0.640 5.640 12 C 0.116 3.884 13 C -0.131 4.131 14 C -0.103 4.103 15 C -0.114 4.114 16 C 0.242 3.758 17 H 0.101 0.899 18 C 0.195 3.805 19 N -0.285 5.285 20 N -0.308 5.308 21 C 0.136 3.864 22 C 0.020 3.980 23 C -0.140 4.140 24 C 0.067 3.933 25 O -0.398 6.398 26 C 0.075 3.925 27 C -0.144 4.144 28 O -0.243 6.243 29 H 0.269 0.731 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.061 0.939 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.418 -14.450 3.855 15.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.183 4.183 3 Si 0.811 3.189 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.172 1.172 7 C -0.602 4.602 8 H 0.111 0.889 9 C 0.345 3.655 10 O -0.476 6.476 11 N -0.380 5.380 12 C -0.006 4.006 13 C -0.170 4.170 14 C -0.140 4.140 15 C -0.153 4.153 16 C 0.136 3.864 17 H 0.118 0.882 18 C -0.014 4.014 19 N -0.132 5.132 20 N -0.155 5.155 21 C -0.075 4.075 22 C 0.000 4.000 23 C -0.178 4.178 24 C -0.010 4.010 25 O -0.317 6.317 26 C -0.002 4.002 27 C -0.183 4.183 28 O -0.124 6.124 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.139 0.861 39 H 0.078 0.922 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.137 0.863 43 H 0.099 0.901 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.265 -13.697 2.485 14.104 hybrid contribution 0.481 0.908 1.071 1.484 sum -1.784 -12.789 3.556 13.394 Atomic orbital electron populations 1.70184 1.09485 1.28523 1.37051 1.26904 0.95376 1.04755 0.91269 0.85164 0.78257 0.75129 0.80348 1.18231 1.20532 1.17153 1.21393 0.94634 0.89572 1.54571 0.88876 1.18635 0.86859 0.83922 0.76043 1.90633 1.16871 1.85074 1.55012 1.48331 1.10365 1.02926 1.76357 1.21763 0.78602 1.01682 0.98518 1.21952 1.00652 0.95369 0.98996 1.21479 0.92017 0.97107 1.03420 1.21920 0.97785 0.98222 0.97363 1.19471 0.79406 0.87582 0.99934 0.88183 1.27623 0.90529 0.94077 0.89213 1.74130 1.04125 1.13777 1.21212 1.73983 1.02044 1.16874 1.22613 1.28204 0.93557 0.98380 0.87327 1.19874 0.78769 0.98790 1.02564 1.22264 0.97952 1.00289 0.97306 1.22769 0.89977 0.84183 1.04026 1.87926 1.62996 1.26038 1.54772 1.22611 0.89729 0.96595 0.91240 1.22212 0.98231 0.95311 1.02536 1.84579 1.15784 1.64792 1.47281 0.92132 0.91013 0.89996 0.93636 0.87753 0.88911 0.89496 0.93261 0.89008 0.86107 0.92157 0.88829 0.90141 0.86256 0.90056 0.87373 0.91989 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.89 11.88 21.83 0.26 -51.63 16 2 C 0.03 1.80 5.50 85.30 0.47 2.27 16 3 Si 0.99 42.11 29.56 68.60 2.03 44.13 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 7 C -0.57 -32.08 8.81 24.83 0.22 -31.86 16 8 H 0.09 4.70 5.73 -2.91 -0.02 4.68 16 9 C 0.54 31.26 7.41 86.36 0.64 31.90 16 10 O -0.59 -38.90 10.42 -4.32 -0.05 -38.95 16 11 N -0.64 -28.53 2.98 -803.56 -2.40 -30.93 16 12 C 0.12 3.88 6.33 86.36 0.55 4.42 16 13 C -0.13 -3.32 6.08 30.67 0.19 -3.14 16 14 C -0.10 -2.21 5.88 30.62 0.18 -2.03 16 15 C -0.11 -3.39 5.35 30.67 0.16 -3.23 16 16 C 0.24 9.40 3.43 44.18 0.15 9.55 16 17 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 18 C 0.20 9.31 4.98 88.34 0.44 9.75 16 19 N -0.28 -15.50 9.74 -165.50 -1.61 -17.11 16 20 N -0.31 -15.92 12.19 -165.50 -2.02 -17.93 16 21 C 0.14 5.90 7.00 88.34 0.62 6.52 16 22 C 0.02 0.61 2.75 -11.42 -0.03 0.58 16 23 C -0.14 -3.45 5.41 30.68 0.17 -3.28 16 24 C 0.07 1.22 6.84 72.01 0.49 1.72 16 25 O -0.40 -9.60 10.77 -148.98 -1.60 -11.20 16 26 C 0.07 1.70 6.84 72.01 0.49 2.19 16 27 C -0.14 -4.60 5.41 30.69 0.17 -4.44 16 28 O -0.24 -10.95 10.87 -3.70 -0.04 -10.99 16 29 H 0.27 15.71 8.29 -92.71 -0.77 14.95 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 2.98 5.33 -2.39 -0.01 2.97 16 32 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 45 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -88.54 365.53 0.46 -88.08 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.99 Total: 25.61 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 4.90 Total: 20.93 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -5.77 Total: -117.61 kcal Atomic # 8 Polarization: -59.45 SS G_CDS: -1.69 Total: -61.14 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -88.54 0.46 -88.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412124508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.563 kcal (2) G-P(sol) polarization free energy of solvation -88.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds