Wall clock time and date at job start Tue Mar 31 2020 18:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86804 * 119.99512 * 2 1 4 4 H 1.48506 * 109.47044 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47052 * 299.99735 * 3 2 1 6 6 H 1.48503 * 109.47358 * 60.00170 * 3 2 1 7 7 C 1.40022 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99966 * 180.02562 * 7 2 1 9 9 C 1.41331 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.40613 * 119.78793 * 179.97438 * 9 7 2 11 11 C 1.38305 * 119.12781 * 180.02562 * 10 9 7 12 12 C 1.38691 * 118.67531 * 0.02562 * 11 10 9 13 13 C 1.39647 * 119.49066 * 359.97438 * 12 11 10 14 14 N 1.39248 * 119.57144 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00237 * 185.33078 * 14 13 12 16 16 O 1.21578 * 119.99534 * 354.84814 * 15 14 13 17 17 N 1.34775 * 120.00419 * 174.84126 * 15 14 13 18 18 C 1.46494 * 120.00273 * 179.97438 * 17 15 14 19 19 H 1.09005 * 109.47145 * 35.00101 * 18 17 15 20 20 C 1.53002 * 109.47380 * 275.00641 * 18 17 15 21 21 O 1.42902 * 109.46741 * 294.99912 * 20 18 17 22 22 C 1.52994 * 109.47410 * 155.00249 * 18 17 15 23 23 C 1.52999 * 109.47359 * 295.00438 * 22 18 17 24 24 H 1.09004 * 110.55347 * 56.41947 * 23 22 18 25 25 C 1.54996 * 110.62257 * 179.47592 * 23 22 18 26 26 C 1.54806 * 102.09337 * 155.52388 * 25 23 22 27 27 C 1.54096 * 104.18800 * 339.11886 * 26 25 23 28 28 O 1.43745 * 107.29450 * 357.97010 * 27 26 25 29 29 N 1.31926 * 120.85231 * 0.25356 * 13 12 11 30 30 H 0.97000 * 120.00069 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.43636 * 0.05072 * 10 9 7 32 32 H 1.08004 * 120.66482 * 180.02562 * 11 10 9 33 33 H 1.07995 * 120.25353 * 179.97438 * 12 11 10 34 34 H 0.97003 * 120.00050 * 5.33146 * 14 13 12 35 35 H 0.97003 * 119.99846 * 0.02562 * 17 15 14 36 36 H 1.08998 * 109.47039 * 54.99456 * 20 18 17 37 37 H 1.09000 * 109.47413 * 174.99723 * 20 18 17 38 38 H 0.96700 * 113.99692 * 180.02562 * 21 20 18 39 39 H 1.08998 * 109.47703 * 175.00071 * 22 18 17 40 40 H 1.09001 * 109.46884 * 55.00460 * 22 18 17 41 41 H 1.09001 * 110.90817 * 37.32220 * 25 23 22 42 42 H 1.09003 * 110.90094 * 273.72244 * 25 23 22 43 43 H 1.09005 * 110.48656 * 220.44161 * 26 25 23 44 44 H 1.09003 * 110.48742 * 97.79318 * 26 25 23 45 45 H 1.08999 * 109.87953 * 117.39716 * 27 26 25 46 46 H 1.09006 * 109.87428 * 238.39584 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7014 1.3466 0.0006 5 1 1.8826 2.3965 -1.2126 6 1 1.8826 2.3966 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0877 -1.2125 0.0010 9 6 1.3010 -2.4366 0.0016 10 6 2.0087 -3.6517 0.0016 11 6 1.3035 -4.8414 0.0022 12 6 -0.0826 -4.7935 0.0022 13 6 -0.7276 -3.5549 0.0021 14 7 -2.1192 -3.5048 0.0016 15 6 -2.7508 -2.3192 -0.1069 16 8 -2.1090 -1.2866 -0.1099 17 7 -4.0939 -2.2782 -0.2121 18 6 -4.7804 -0.9894 -0.3294 19 1 -4.1647 -0.3011 -0.9086 20 6 -5.0186 -0.4095 1.0662 21 8 -5.9198 -1.2538 1.7853 22 6 -6.1233 -1.1892 -1.0347 23 6 -5.8803 -1.6508 -2.4730 24 1 -5.2770 -2.5585 -2.4869 25 6 -7.2258 -1.8744 -3.2093 26 6 -6.8184 -1.6931 -4.6917 27 6 -5.5065 -0.8872 -4.6270 28 8 -5.2453 -0.6066 -3.2416 29 7 -0.0356 -2.4317 -0.0029 30 1 -0.4850 0.8400 -0.0004 31 1 3.0887 -3.6558 0.0016 32 1 1.8218 -5.7890 0.0026 33 1 -0.6586 -5.7070 0.0021 34 1 -2.6340 -4.3233 0.0793 35 1 -4.6059 -3.1020 -0.2094 36 1 -4.0710 -0.3500 1.6016 37 1 -5.4486 0.5882 0.9767 38 1 -6.1171 -0.9463 2.6807 39 1 -6.6730 -0.2480 -1.0432 40 1 -6.7036 -1.9440 -0.5040 41 1 -7.9603 -1.1253 -2.9133 42 1 -7.6046 -2.8807 -3.0302 43 1 -7.5829 -1.1348 -5.2320 44 1 -6.6482 -2.6617 -5.1618 45 1 -4.6897 -1.4744 -5.0467 46 1 -5.6163 0.0446 -5.1820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414490715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:41 Heat of formation + Delta-G solvation = -65.493318 kcal Electronic energy + Delta-G solvation = -29850.758759 eV Core-core repulsion = 25741.465022 eV Total energy + Delta-G solvation = -4109.293737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.84508 -39.18636 -37.88932 -36.79483 -34.62286 -33.84130 -32.89100 -32.22820 -31.40137 -30.19705 -29.19476 -28.18431 -25.61426 -25.42204 -22.60743 -21.94035 -21.28300 -21.18613 -20.33155 -19.68927 -18.06171 -17.34962 -17.00624 -16.53755 -16.21355 -15.87150 -15.49557 -14.96310 -14.65718 -14.42580 -14.30118 -13.97221 -13.71650 -13.61316 -13.47060 -13.03050 -12.82993 -12.74498 -12.23175 -12.08700 -11.92484 -11.79439 -11.74184 -11.49426 -11.15071 -11.05598 -10.87173 -10.83171 -10.60679 -10.56134 -10.39465 -9.87517 -9.83596 -9.66240 -9.59831 -8.98260 -8.94906 -8.31949 -7.87041 -7.11667 -6.84926 -6.02875 -4.31292 2.91240 3.20294 3.22754 3.26133 3.33523 3.36416 3.81976 4.13316 4.27510 4.39518 4.47418 4.49940 4.76142 4.87611 4.92496 5.03122 5.11223 5.17222 5.30008 5.40618 5.53105 5.54531 5.61242 5.66362 5.73560 5.76828 5.88506 6.05393 6.07143 6.13552 6.16318 6.30775 6.55994 6.71423 6.88610 6.90250 6.92699 7.14470 7.32522 7.47395 7.67950 7.70632 7.84834 7.89291 8.26002 8.39147 8.77852 8.89734 9.14611 9.72926 10.36136 10.57807 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.003689 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.324598 B = 7588.177959 C = 8102.875767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.646 5.646 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.426 4.426 8 H 0.081 0.919 9 C 0.271 3.729 10 C -0.308 4.308 11 C -0.036 4.036 12 C -0.360 4.360 13 C 0.388 3.612 14 N -0.674 5.674 15 C 0.664 3.336 16 O -0.464 6.464 17 N -0.747 5.747 18 C 0.177 3.823 19 H 0.107 0.893 20 C 0.061 3.939 21 O -0.572 6.572 22 C -0.112 4.112 23 C 0.077 3.923 24 H 0.072 0.928 25 C -0.150 4.150 26 C -0.156 4.156 27 C 0.046 3.954 28 O -0.367 6.367 29 N -0.470 5.470 30 H 0.271 0.729 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.393 0.607 35 H 0.383 0.617 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.373 0.627 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.359 -1.842 -3.430 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.264 5.264 2 C -0.173 4.173 3 Si 0.717 3.283 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.457 4.457 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.331 4.331 11 C -0.060 4.060 12 C -0.386 4.386 13 C 0.148 3.852 14 N -0.322 5.322 15 C 0.363 3.637 16 O -0.328 6.328 17 N -0.406 5.406 18 C 0.071 3.929 19 H 0.125 0.875 20 C -0.018 4.018 21 O -0.377 6.377 22 C -0.150 4.150 23 C 0.019 3.981 24 H 0.090 0.910 25 C -0.188 4.188 26 C -0.194 4.194 27 C -0.031 4.031 28 O -0.286 6.286 29 N -0.189 5.189 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.226 0.774 35 H 0.215 0.785 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.219 0.781 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.216 0.032 -3.951 17.663 hybrid contribution 0.146 -0.880 0.415 0.984 sum -17.070 -0.849 -3.536 17.453 Atomic orbital electron populations 1.70366 1.05510 1.27098 1.23457 1.26183 0.95126 1.00432 0.95535 0.86518 0.80932 0.82559 0.78297 1.18672 1.20109 1.20168 1.19592 0.94001 0.89395 1.42674 0.90044 1.18404 0.87219 0.91917 0.87859 1.21615 0.98476 0.93584 1.19452 1.20531 0.93136 0.96462 0.95907 1.20437 0.94737 0.94826 1.28575 1.18348 0.82529 0.90836 0.93440 1.42576 1.05162 1.07927 1.76567 1.16449 0.81440 0.85428 0.80421 1.91377 1.62389 1.29828 1.49175 1.45246 1.05500 1.08073 1.81816 1.20684 0.92582 0.86344 0.93287 0.87530 1.22765 0.92927 0.92243 0.93871 1.86419 1.67118 1.53442 1.30718 1.21794 0.97324 1.03194 0.92646 1.23186 0.91694 0.91322 0.91890 0.90997 1.23176 0.98314 1.02651 0.94679 1.22936 0.98065 1.01043 0.97363 1.23101 0.95843 0.99788 0.84348 1.88946 1.75837 1.47742 1.16109 1.68708 1.06775 1.23097 1.20296 0.91761 0.88686 0.88741 0.89262 0.77376 0.78452 0.92393 0.93501 0.78096 0.90140 0.89471 0.90500 0.90356 0.90718 0.90834 0.92482 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.35 8.98 55.55 0.50 -17.85 16 2 C 0.06 1.53 5.50 -17.35 -0.10 1.44 16 3 Si 0.89 19.74 29.56 -169.99 -5.02 14.71 16 4 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.43 -12.03 9.14 -37.74 -0.34 -12.37 16 8 H 0.08 2.16 7.85 -52.48 -0.41 1.75 16 9 C 0.27 7.83 6.55 -85.00 -0.56 7.27 16 10 C -0.31 -7.98 9.83 -38.66 -0.38 -8.36 16 11 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 12 C -0.36 -8.34 9.96 -38.89 -0.39 -8.72 16 13 C 0.39 9.79 7.43 -154.99 -1.15 8.64 16 14 N -0.67 -13.89 5.39 -15.79 -0.09 -13.98 16 15 C 0.66 14.03 8.49 -86.92 -0.74 13.29 16 16 O -0.46 -12.02 11.76 5.30 0.06 -11.96 16 17 N -0.75 -11.67 4.46 -58.68 -0.26 -11.93 16 18 C 0.18 2.58 2.33 -67.94 -0.16 2.42 16 19 H 0.11 1.92 7.23 -51.93 -0.38 1.55 16 20 C 0.06 0.83 6.85 37.16 0.25 1.08 16 21 O -0.57 -6.73 12.83 -35.23 -0.45 -7.18 16 22 C -0.11 -1.25 4.24 -26.73 -0.11 -1.37 16 23 C 0.08 0.89 3.23 -25.68 -0.08 0.81 16 24 H 0.07 0.90 7.72 -51.93 -0.40 0.50 16 25 C -0.15 -1.32 6.59 -24.73 -0.16 -1.48 16 26 C -0.16 -1.34 7.01 -25.21 -0.18 -1.51 16 27 C 0.05 0.52 7.70 37.73 0.29 0.81 16 28 O -0.37 -5.29 10.81 -35.23 -0.38 -5.67 16 29 N -0.47 -13.57 5.73 -10.26 -0.06 -13.63 16 30 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 31 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 32 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 33 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.39 6.35 8.71 -40.82 -0.36 6.00 16 35 H 0.38 4.92 8.62 -40.82 -0.35 4.56 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.37 2.96 9.12 45.56 0.42 3.37 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 0.89 7.73 -51.93 -0.40 0.49 16 41 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -35.23 378.47 -10.29 -45.52 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -6.09 Total: 15.56 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -4.20 Total: 0.70 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.09 Total: -57.39 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.77 Total: -24.81 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.23 -10.29 -45.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414490715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.978 kcal (2) G-P(sol) polarization free energy of solvation -35.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds