Wall clock time and date at job start Tue Mar 31 2020 18:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86804 * 119.99512 * 2 1 4 4 H 1.48506 * 109.47044 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47052 * 299.99735 * 3 2 1 6 6 H 1.48503 * 109.47358 * 60.00170 * 3 2 1 7 7 C 1.40022 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99966 * 180.02562 * 7 2 1 9 9 C 1.41331 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.40613 * 119.78793 * 179.97438 * 9 7 2 11 11 C 1.38305 * 119.12781 * 180.02562 * 10 9 7 12 12 C 1.38691 * 118.67531 * 0.02562 * 11 10 9 13 13 C 1.39647 * 119.49066 * 359.97438 * 12 11 10 14 14 N 1.39248 * 119.57144 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00237 * 185.33078 * 14 13 12 16 16 O 1.21578 * 119.99534 * 354.84814 * 15 14 13 17 17 N 1.34775 * 120.00419 * 174.84126 * 15 14 13 18 18 C 1.46494 * 120.00273 * 179.97438 * 17 15 14 19 19 H 1.09005 * 109.47145 * 35.00101 * 18 17 15 20 20 C 1.53002 * 109.47380 * 275.00641 * 18 17 15 21 21 O 1.42902 * 109.46741 * 294.99912 * 20 18 17 22 22 C 1.52994 * 109.47410 * 155.00249 * 18 17 15 23 23 C 1.52999 * 109.47359 * 295.00438 * 22 18 17 24 24 H 1.09004 * 110.55347 * 56.41947 * 23 22 18 25 25 C 1.54996 * 110.62257 * 179.47592 * 23 22 18 26 26 C 1.54806 * 102.09337 * 155.52388 * 25 23 22 27 27 C 1.54096 * 104.18800 * 339.11886 * 26 25 23 28 28 O 1.43745 * 107.29450 * 357.97010 * 27 26 25 29 29 N 1.31926 * 120.85231 * 0.25356 * 13 12 11 30 30 H 0.97000 * 120.00069 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.43636 * 0.05072 * 10 9 7 32 32 H 1.08004 * 120.66482 * 180.02562 * 11 10 9 33 33 H 1.07995 * 120.25353 * 179.97438 * 12 11 10 34 34 H 0.97003 * 120.00050 * 5.33146 * 14 13 12 35 35 H 0.97003 * 119.99846 * 0.02562 * 17 15 14 36 36 H 1.08998 * 109.47039 * 54.99456 * 20 18 17 37 37 H 1.09000 * 109.47413 * 174.99723 * 20 18 17 38 38 H 0.96700 * 113.99692 * 180.02562 * 21 20 18 39 39 H 1.08998 * 109.47703 * 175.00071 * 22 18 17 40 40 H 1.09001 * 109.46884 * 55.00460 * 22 18 17 41 41 H 1.09001 * 110.90817 * 37.32220 * 25 23 22 42 42 H 1.09003 * 110.90094 * 273.72244 * 25 23 22 43 43 H 1.09005 * 110.48656 * 220.44161 * 26 25 23 44 44 H 1.09003 * 110.48742 * 97.79318 * 26 25 23 45 45 H 1.08999 * 109.87953 * 117.39716 * 27 26 25 46 46 H 1.09006 * 109.87428 * 238.39584 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7014 1.3466 0.0006 5 1 1.8826 2.3965 -1.2126 6 1 1.8826 2.3966 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0877 -1.2125 0.0010 9 6 1.3010 -2.4366 0.0016 10 6 2.0087 -3.6517 0.0016 11 6 1.3035 -4.8414 0.0022 12 6 -0.0826 -4.7935 0.0022 13 6 -0.7276 -3.5549 0.0021 14 7 -2.1192 -3.5048 0.0016 15 6 -2.7508 -2.3192 -0.1069 16 8 -2.1090 -1.2866 -0.1099 17 7 -4.0939 -2.2782 -0.2121 18 6 -4.7804 -0.9894 -0.3294 19 1 -4.1647 -0.3011 -0.9086 20 6 -5.0186 -0.4095 1.0662 21 8 -5.9198 -1.2538 1.7853 22 6 -6.1233 -1.1892 -1.0347 23 6 -5.8803 -1.6508 -2.4730 24 1 -5.2770 -2.5585 -2.4869 25 6 -7.2258 -1.8744 -3.2093 26 6 -6.8184 -1.6931 -4.6917 27 6 -5.5065 -0.8872 -4.6270 28 8 -5.2453 -0.6066 -3.2416 29 7 -0.0356 -2.4317 -0.0029 30 1 -0.4850 0.8400 -0.0004 31 1 3.0887 -3.6558 0.0016 32 1 1.8218 -5.7890 0.0026 33 1 -0.6586 -5.7070 0.0021 34 1 -2.6340 -4.3233 0.0793 35 1 -4.6059 -3.1020 -0.2094 36 1 -4.0710 -0.3500 1.6016 37 1 -5.4486 0.5882 0.9767 38 1 -6.1171 -0.9463 2.6807 39 1 -6.6730 -0.2480 -1.0432 40 1 -6.7036 -1.9440 -0.5040 41 1 -7.9603 -1.1253 -2.9133 42 1 -7.6046 -2.8807 -3.0302 43 1 -7.5829 -1.1348 -5.2320 44 1 -6.6482 -2.6617 -5.1618 45 1 -4.6897 -1.4744 -5.0467 46 1 -5.6163 0.0446 -5.1820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414490715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:40 Heat of formation + Delta-G solvation = -92.103438 kcal Electronic energy + Delta-G solvation = -29851.912661 eV Core-core repulsion = 25741.465022 eV Total energy + Delta-G solvation = -4110.447639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.24613 -40.41652 -39.55182 -38.07787 -36.01344 -35.54549 -34.79319 -33.12138 -32.59814 -32.14362 -30.79285 -29.54480 -27.39708 -26.54095 -24.21900 -23.23894 -22.90043 -22.06580 -21.72283 -21.19570 -19.81941 -18.87099 -18.26083 -17.94954 -17.44387 -16.96293 -16.68314 -16.38438 -16.23977 -16.15164 -15.64733 -15.58178 -15.25780 -14.79014 -14.69954 -14.52147 -14.39707 -13.95856 -13.79872 -13.66288 -13.04860 -12.92425 -12.84475 -12.70163 -12.58695 -12.52309 -12.47717 -12.29791 -12.01576 -11.72935 -11.63481 -11.51567 -11.46712 -10.95351 -10.84469 -10.74639 -10.60972 -9.88021 -9.74613 -9.07104 -8.75135 -7.99787 -6.39149 0.98659 1.30458 1.39069 1.52090 1.53997 1.85684 2.27438 2.61713 2.96848 3.06477 3.38396 3.46130 3.56488 3.71700 4.04195 4.05582 4.09533 4.15430 4.23411 4.37551 4.42779 4.46430 4.53183 4.63076 4.73267 4.78409 4.82363 4.87317 4.93336 4.96703 4.98301 5.02276 5.08852 5.10175 5.21436 5.26112 5.31592 5.69162 5.79113 5.89049 5.94607 6.04236 6.07444 6.34820 6.45566 6.84613 6.87249 7.10039 7.31730 8.08254 8.41494 8.60800 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.003689 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.324598 B = 7588.177959 C = 8102.875767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.682 5.682 2 C 0.010 3.990 3 Si 0.972 3.028 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.467 4.467 8 H 0.085 0.915 9 C 0.237 3.763 10 C -0.332 4.332 11 C -0.033 4.033 12 C -0.347 4.347 13 C 0.365 3.635 14 N -0.663 5.663 15 C 0.657 3.343 16 O -0.514 6.514 17 N -0.724 5.724 18 C 0.175 3.825 19 H 0.065 0.935 20 C 0.074 3.926 21 O -0.571 6.571 22 C -0.097 4.097 23 C 0.068 3.932 24 H 0.058 0.942 25 C -0.141 4.141 26 C -0.149 4.149 27 C 0.035 3.965 28 O -0.404 6.404 29 N -0.506 5.506 30 H 0.267 0.733 31 H 0.104 0.896 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.415 0.585 35 H 0.401 0.599 36 H 0.018 0.982 37 H 0.068 0.932 38 H 0.392 0.608 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.044 0.956 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.528 -3.275 -3.516 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.301 5.301 2 C -0.216 4.216 3 Si 0.793 3.207 4 H -0.176 1.176 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.497 4.497 8 H 0.103 0.897 9 C 0.111 3.889 10 C -0.355 4.355 11 C -0.058 4.058 12 C -0.373 4.373 13 C 0.125 3.875 14 N -0.313 5.313 15 C 0.356 3.644 16 O -0.382 6.382 17 N -0.383 5.383 18 C 0.069 3.931 19 H 0.083 0.917 20 C -0.006 4.006 21 O -0.379 6.379 22 C -0.134 4.134 23 C 0.011 3.989 24 H 0.076 0.924 25 C -0.179 4.179 26 C -0.187 4.187 27 C -0.042 4.042 28 O -0.324 6.324 29 N -0.225 5.225 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.252 0.748 35 H 0.236 0.764 36 H 0.036 0.964 37 H 0.086 0.914 38 H 0.242 0.758 39 H 0.110 0.890 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.101 0.899 45 H 0.062 0.938 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.461 -1.471 -4.022 19.927 hybrid contribution 0.740 -0.617 0.451 1.064 sum -18.722 -2.088 -3.571 19.173 Atomic orbital electron populations 1.70580 1.07098 1.27628 1.24827 1.27039 0.96006 1.03915 0.94641 0.85320 0.79684 0.77379 0.78315 1.17641 1.19798 1.19514 1.19907 0.94363 0.90483 1.44994 0.89711 1.18899 0.87970 0.93400 0.88608 1.21803 0.99166 0.93868 1.20648 1.21013 0.93461 0.97312 0.93972 1.20912 0.95161 0.95530 1.25680 1.18858 0.84215 0.91084 0.93305 1.42423 1.03889 1.08966 1.76062 1.16736 0.82822 0.84856 0.80013 1.91369 1.63974 1.31548 1.51301 1.44963 1.03633 1.09511 1.80222 1.20712 0.93518 0.84873 0.93995 0.91691 1.22452 0.91755 0.93511 0.92849 1.86356 1.66122 1.53249 1.32131 1.21726 0.95074 1.04426 0.92190 1.23316 0.93160 0.90206 0.92213 0.92365 1.23156 0.96546 1.04191 0.93967 1.22926 0.96770 1.01258 0.97735 1.23278 0.97131 1.00612 0.83133 1.88922 1.76819 1.48929 1.17771 1.68667 1.07172 1.25306 1.21338 0.92193 0.87808 0.84481 0.85133 0.74794 0.76353 0.96364 0.91385 0.75845 0.89012 0.87426 0.89460 0.88304 0.88872 0.89892 0.93791 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -41.06 8.98 21.84 0.20 -40.86 16 2 C 0.01 0.55 5.50 85.29 0.47 1.02 16 3 Si 0.97 42.36 29.56 68.60 2.03 44.39 16 4 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.47 -27.56 9.14 23.46 0.21 -27.35 16 8 H 0.08 4.70 7.85 -2.91 -0.02 4.68 16 9 C 0.24 14.21 6.55 40.20 0.26 14.47 16 10 C -0.33 -17.36 9.83 22.87 0.22 -17.13 16 11 C -0.03 -1.50 10.15 22.39 0.23 -1.27 16 12 C -0.35 -15.40 9.96 22.72 0.23 -15.17 16 13 C 0.37 18.52 7.43 133.24 0.99 19.51 16 14 N -0.66 -27.27 5.39 -322.13 -1.74 -29.01 16 15 C 0.66 28.59 8.49 179.05 1.52 30.11 16 16 O -0.51 -28.25 11.76 -3.96 -0.05 -28.29 16 17 N -0.72 -22.67 4.46 -457.84 -2.04 -24.72 16 18 C 0.17 5.17 2.33 44.99 0.10 5.27 16 19 H 0.06 2.51 7.23 -2.38 -0.02 2.49 16 20 C 0.07 2.00 6.85 71.98 0.49 2.49 16 21 O -0.57 -12.32 12.83 -148.98 -1.91 -14.24 16 22 C -0.10 -2.01 4.24 30.59 0.13 -1.88 16 23 C 0.07 1.52 3.23 31.28 0.10 1.62 16 24 H 0.06 1.42 7.72 -2.38 -0.02 1.40 16 25 C -0.14 -2.08 6.59 31.89 0.21 -1.87 16 26 C -0.15 -2.23 7.01 31.58 0.22 -2.01 16 27 C 0.04 0.79 7.70 72.35 0.56 1.34 16 28 O -0.40 -11.87 10.81 -148.98 -1.61 -13.48 16 29 N -0.51 -30.29 5.73 -186.37 -1.07 -31.36 16 30 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 31 H 0.10 5.06 8.06 -2.91 -0.02 5.03 16 32 H 0.14 4.93 8.06 -2.91 -0.02 4.90 16 33 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 34 H 0.42 12.72 8.71 -92.71 -0.81 11.92 16 35 H 0.40 9.72 8.62 -92.71 -0.80 8.92 16 36 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 38 H 0.39 5.36 9.12 -74.06 -0.68 4.69 16 39 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.11 1.84 7.73 -2.39 -0.02 1.82 16 41 H 0.09 1.13 8.06 -2.39 -0.02 1.11 16 42 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -82.36 378.47 -1.49 -83.85 By element: Atomic # 1 Polarization: 45.82 SS G_CDS: -1.25 Total: 44.56 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.95 Total: 9.14 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -4.65 Total: -125.94 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -3.57 Total: -56.01 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -82.36 -1.49 -83.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414490715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.250 kcal (2) G-P(sol) polarization free energy of solvation -82.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds