Wall clock time and date at job start Tue Mar 31 2020 18:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86800 * 119.99703 * 2 1 4 4 H 1.48506 * 109.46672 * 269.99813 * 3 2 1 5 5 H 1.48497 * 109.47395 * 29.99324 * 3 2 1 6 6 H 1.48496 * 109.47262 * 149.99864 * 3 2 1 7 7 C 1.40023 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00326 * 179.97438 * 7 2 1 9 9 C 1.41333 * 119.99819 * 0.02562 * 7 2 1 10 10 C 1.40609 * 119.78723 * 180.02562 * 9 7 2 11 11 C 1.38314 * 119.12779 * 179.97438 * 10 9 7 12 12 C 1.38686 * 118.67246 * 359.75576 * 11 10 9 13 13 C 1.39641 * 119.49632 * 0.48769 * 12 11 10 14 14 N 1.39247 * 119.57596 * 179.76919 * 13 12 11 15 15 C 1.34781 * 120.00000 * 185.41084 * 14 13 12 16 16 O 1.21579 * 119.99983 * 354.86116 * 15 14 13 17 17 N 1.34779 * 120.00008 * 174.86482 * 15 14 13 18 18 C 1.46499 * 120.00087 * 180.02562 * 17 15 14 19 19 H 1.09001 * 109.47048 * 34.99485 * 18 17 15 20 20 C 1.53001 * 109.46882 * 274.99528 * 18 17 15 21 21 O 1.42897 * 109.46881 * 295.00071 * 20 18 17 22 22 C 1.52998 * 109.47407 * 154.99579 * 18 17 15 23 23 C 1.52999 * 109.46979 * 294.99962 * 22 18 17 24 24 H 1.09002 * 109.82519 * 305.56364 * 23 22 18 25 25 C 1.54389 * 109.83116 * 184.58415 * 23 22 18 26 26 C 1.55305 * 102.25484 * 219.12775 * 25 23 22 27 27 C 1.54951 * 100.93966 * 34.13563 * 26 25 23 28 28 O 1.43239 * 109.83240 * 66.45233 * 23 22 18 29 29 N 1.31933 * 120.84781 * 359.50220 * 13 12 11 30 30 H 0.96999 * 120.00410 * 0.02562 * 1 2 3 31 31 H 1.07992 * 120.43574 * 0.02562 * 10 9 7 32 32 H 1.08004 * 120.66364 * 180.02562 * 11 10 9 33 33 H 1.08001 * 120.25344 * 180.24755 * 12 11 10 34 34 H 0.97001 * 120.00337 * 5.41640 * 14 13 12 35 35 H 0.97002 * 119.99908 * 359.97438 * 17 15 14 36 36 H 1.08999 * 109.47105 * 55.00092 * 20 18 17 37 37 H 1.08995 * 109.47126 * 174.99695 * 20 18 17 38 38 H 0.96700 * 114.00000 * 179.97438 * 21 20 18 39 39 H 1.08993 * 109.47343 * 174.99819 * 22 18 17 40 40 H 1.08999 * 109.46990 * 54.99241 * 22 18 17 41 41 H 1.09001 * 110.84493 * 337.32273 * 25 23 22 42 42 H 1.08999 * 110.84468 * 100.93710 * 25 23 22 43 43 H 1.08998 * 111.12531 * 276.21631 * 26 25 23 44 44 H 1.09002 * 111.16052 * 152.06658 * 26 25 23 45 45 H 1.09000 * 110.30570 * 204.64032 * 27 26 25 46 46 H 1.08995 * 110.39231 * 82.51379 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0464 -1.4002 5 1 1.4388 2.6527 0.6999 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2126 0.0001 9 6 1.3010 -2.4366 0.0005 10 6 2.0086 -3.6517 0.0016 11 6 1.3033 -4.8415 0.0022 12 6 -0.0827 -4.7934 0.0068 13 6 -0.7277 -3.5550 0.0004 14 7 -2.1193 -3.5048 0.0001 15 6 -2.7509 -2.3199 -0.1160 16 8 -2.1091 -1.2873 -0.1265 17 7 -4.0941 -2.2795 -0.2205 18 6 -4.7806 -0.9916 -0.3473 19 1 -4.1653 -0.3079 -0.9322 20 6 -5.0177 -0.4009 1.0441 21 8 -5.9184 -1.2396 1.7703 22 6 -6.1241 -1.1967 -1.0500 23 6 -5.8821 -1.6694 -2.4849 24 1 -5.2205 -0.9711 -2.9976 25 6 -7.2265 -1.7687 -3.2374 26 6 -7.0379 -3.0592 -4.0806 27 6 -6.1701 -3.9127 -3.1217 28 8 -5.2950 -2.9759 -2.4737 29 7 -0.0357 -2.4317 -0.0001 30 1 -0.4851 0.8400 -0.0004 31 1 3.0885 -3.6558 0.0029 32 1 1.8217 -5.7890 0.0034 33 1 -0.6588 -5.7070 0.0113 34 1 -2.6342 -4.3227 0.0837 35 1 -4.6061 -3.1034 -0.2124 36 1 -4.0697 -0.3374 1.5782 37 1 -5.4476 0.5959 0.9471 38 1 -6.1144 -0.9257 2.6637 39 1 -6.6735 -0.2556 -1.0653 40 1 -6.7040 -1.9474 -0.5131 41 1 -8.0552 -1.8798 -2.5380 42 1 -7.3751 -0.9024 -3.8820 43 1 -6.5064 -2.8480 -5.0084 44 1 -7.9944 -3.5423 -4.2798 45 1 -5.5909 -4.6439 -3.6855 46 1 -6.7986 -4.4147 -2.3861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414490717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:44 Heat of formation + Delta-G solvation = -63.569923 kcal Electronic energy + Delta-G solvation = -30080.768905 eV Core-core repulsion = 25971.558572 eV Total energy + Delta-G solvation = -4109.210333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.87229 -39.10712 -37.80673 -36.74185 -34.50822 -33.74799 -32.82249 -32.31674 -31.28818 -30.14983 -29.15007 -28.12161 -25.58674 -25.37623 -22.61022 -21.89134 -21.31082 -21.07360 -20.32707 -19.54767 -17.92386 -17.29248 -16.98078 -16.83202 -16.09941 -16.02214 -15.25634 -14.65471 -14.55071 -14.38763 -14.26725 -13.84165 -13.63930 -13.55844 -13.42004 -13.15942 -12.81785 -12.71825 -12.17712 -12.09606 -11.87761 -11.81286 -11.70805 -11.33700 -11.22394 -11.07903 -10.95498 -10.86197 -10.59848 -10.54064 -10.35566 -9.85608 -9.82400 -9.55080 -9.48047 -8.89532 -8.87332 -8.12857 -7.82107 -7.05921 -6.77526 -5.99136 -4.27822 2.95778 3.22440 3.24551 3.25930 3.36939 3.49074 3.79708 4.14890 4.33183 4.35830 4.51865 4.54745 4.71793 4.93141 5.03922 5.04262 5.08067 5.17145 5.35270 5.44112 5.49017 5.52870 5.57614 5.63786 5.74424 5.78422 5.87271 5.99122 6.09414 6.18376 6.21406 6.32546 6.61547 6.78892 6.94490 6.97865 7.06378 7.29306 7.38594 7.57848 7.70751 7.76569 7.93534 7.94735 8.31219 8.44841 8.86350 8.99023 9.18936 9.85619 10.41434 10.61347 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.003791 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.090384 B = 7383.254623 C = 8326.140941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.646 5.646 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.428 4.428 8 H 0.080 0.920 9 C 0.272 3.728 10 C -0.309 4.309 11 C -0.036 4.036 12 C -0.359 4.359 13 C 0.390 3.610 14 N -0.672 5.672 15 C 0.668 3.332 16 O -0.475 6.475 17 N -0.732 5.732 18 C 0.180 3.820 19 H 0.096 0.904 20 C 0.061 3.939 21 O -0.571 6.571 22 C -0.130 4.130 23 C 0.081 3.919 24 H 0.079 0.921 25 C -0.151 4.151 26 C -0.157 4.157 27 C 0.047 3.953 28 O -0.361 6.361 29 N -0.470 5.470 30 H 0.270 0.730 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.394 0.606 35 H 0.389 0.611 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.372 0.628 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.253 -1.696 -3.281 18.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.265 5.265 2 C -0.172 4.172 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.459 4.459 8 H 0.098 0.902 9 C 0.147 3.853 10 C -0.333 4.333 11 C -0.061 4.061 12 C -0.385 4.385 13 C 0.151 3.849 14 N -0.320 5.320 15 C 0.366 3.634 16 O -0.340 6.340 17 N -0.391 5.391 18 C 0.073 3.927 19 H 0.114 0.886 20 C -0.019 4.019 21 O -0.375 6.375 22 C -0.168 4.168 23 C 0.024 3.976 24 H 0.097 0.903 25 C -0.189 4.189 26 C -0.194 4.194 27 C -0.029 4.029 28 O -0.280 6.280 29 N -0.188 5.188 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.226 0.774 35 H 0.222 0.778 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.218 0.782 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.056 -0.070 -3.784 18.449 hybrid contribution 0.030 -0.595 0.445 0.743 sum -18.026 -0.664 -3.339 18.345 Atomic orbital electron populations 1.70380 1.05450 1.26993 1.23654 1.26178 0.95111 1.00350 0.95550 0.86587 0.80589 0.82262 0.78893 1.19784 1.20470 1.18865 1.19538 0.93930 0.89422 1.43018 0.90156 1.18404 0.87287 0.91871 0.87761 1.21608 0.98428 0.93613 1.19621 1.20528 0.93146 0.96432 0.95949 1.20455 0.94720 0.94915 1.28404 1.18364 0.82661 0.90762 0.93158 1.42542 1.04993 1.08152 1.76338 1.16423 0.81556 0.85263 0.80111 1.91351 1.62690 1.29851 1.50136 1.45030 1.05172 1.08043 1.80885 1.20584 0.92270 0.86630 0.93176 0.88611 1.22777 0.92923 0.92122 0.94041 1.86444 1.67100 1.53332 1.30641 1.22176 0.97371 1.02324 0.94979 1.22777 0.93317 0.86167 0.95377 0.90293 1.23186 0.98064 0.98570 0.99033 1.23251 1.00780 0.96150 0.99255 1.23358 0.92565 0.92764 0.94255 1.88586 1.43155 1.17256 1.79006 1.68727 1.06678 1.23113 1.20325 0.91852 0.88751 0.88792 0.89271 0.77367 0.77764 0.92413 0.93748 0.78219 0.90128 0.90273 0.90488 0.90265 0.90511 0.90305 0.90019 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.39 8.99 55.55 0.50 -17.89 16 2 C 0.06 1.56 5.50 -17.35 -0.10 1.46 16 3 Si 0.89 19.75 29.56 -169.99 -5.02 14.72 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.43 -12.19 9.14 -37.74 -0.34 -12.53 16 8 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 9 C 0.27 7.95 6.55 -85.00 -0.56 7.39 16 10 C -0.31 -8.13 9.83 -38.66 -0.38 -8.51 16 11 C -0.04 -0.86 10.15 -39.39 -0.40 -1.26 16 12 C -0.36 -8.52 9.95 -38.89 -0.39 -8.91 16 13 C 0.39 10.08 7.43 -154.99 -1.15 8.93 16 14 N -0.67 -14.48 5.39 -15.79 -0.09 -14.57 16 15 C 0.67 14.57 8.49 -86.91 -0.74 13.83 16 16 O -0.47 -12.43 11.77 5.30 0.06 -12.37 16 17 N -0.73 -12.12 3.88 -58.68 -0.23 -12.34 16 18 C 0.18 2.61 2.37 -67.93 -0.16 2.45 16 19 H 0.10 1.60 7.58 -51.93 -0.39 1.21 16 20 C 0.06 0.82 6.85 37.16 0.25 1.07 16 21 O -0.57 -6.95 12.83 -35.23 -0.45 -7.40 16 22 C -0.13 -1.43 4.13 -26.73 -0.11 -1.54 16 23 C 0.08 0.91 3.52 -26.00 -0.09 0.82 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 25 C -0.15 -1.23 6.54 -24.78 -0.16 -1.40 16 26 C -0.16 -1.25 7.16 -24.48 -0.18 -1.42 16 27 C 0.05 0.46 7.78 38.19 0.30 0.76 16 28 O -0.36 -4.73 8.92 -35.23 -0.31 -5.04 16 29 N -0.47 -13.74 5.74 -10.26 -0.06 -13.80 16 30 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 31 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 33 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.39 6.89 8.71 -40.82 -0.36 6.53 16 35 H 0.39 5.83 7.74 -40.82 -0.32 5.51 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.37 3.07 9.12 45.56 0.42 3.48 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.90 7.73 -51.93 -0.40 0.50 16 41 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -35.18 376.07 -10.21 -45.40 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -6.08 Total: 16.50 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -4.20 Total: 1.13 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.13 Total: -58.61 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.70 Total: -24.81 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.18 -10.21 -45.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414490717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.174 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds