Wall clock time and date at job start Tue Mar 31 2020 18:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86800 * 119.99703 * 2 1 4 4 H 1.48506 * 109.46672 * 269.99813 * 3 2 1 5 5 H 1.48497 * 109.47395 * 29.99324 * 3 2 1 6 6 H 1.48496 * 109.47262 * 149.99864 * 3 2 1 7 7 C 1.40023 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00326 * 179.97438 * 7 2 1 9 9 C 1.41333 * 119.99819 * 0.02562 * 7 2 1 10 10 C 1.40609 * 119.78723 * 180.02562 * 9 7 2 11 11 C 1.38314 * 119.12779 * 179.97438 * 10 9 7 12 12 C 1.38686 * 118.67246 * 359.75576 * 11 10 9 13 13 C 1.39641 * 119.49632 * 0.48769 * 12 11 10 14 14 N 1.39247 * 119.57596 * 179.76919 * 13 12 11 15 15 C 1.34781 * 120.00000 * 185.41084 * 14 13 12 16 16 O 1.21579 * 119.99983 * 354.86116 * 15 14 13 17 17 N 1.34779 * 120.00008 * 174.86482 * 15 14 13 18 18 C 1.46499 * 120.00087 * 180.02562 * 17 15 14 19 19 H 1.09001 * 109.47048 * 34.99485 * 18 17 15 20 20 C 1.53001 * 109.46882 * 274.99528 * 18 17 15 21 21 O 1.42897 * 109.46881 * 295.00071 * 20 18 17 22 22 C 1.52998 * 109.47407 * 154.99579 * 18 17 15 23 23 C 1.52999 * 109.46979 * 294.99962 * 22 18 17 24 24 H 1.09002 * 109.82519 * 305.56364 * 23 22 18 25 25 C 1.54389 * 109.83116 * 184.58415 * 23 22 18 26 26 C 1.55305 * 102.25484 * 219.12775 * 25 23 22 27 27 C 1.54951 * 100.93966 * 34.13563 * 26 25 23 28 28 O 1.43239 * 109.83240 * 66.45233 * 23 22 18 29 29 N 1.31933 * 120.84781 * 359.50220 * 13 12 11 30 30 H 0.96999 * 120.00410 * 0.02562 * 1 2 3 31 31 H 1.07992 * 120.43574 * 0.02562 * 10 9 7 32 32 H 1.08004 * 120.66364 * 180.02562 * 11 10 9 33 33 H 1.08001 * 120.25344 * 180.24755 * 12 11 10 34 34 H 0.97001 * 120.00337 * 5.41640 * 14 13 12 35 35 H 0.97002 * 119.99908 * 359.97438 * 17 15 14 36 36 H 1.08999 * 109.47105 * 55.00092 * 20 18 17 37 37 H 1.08995 * 109.47126 * 174.99695 * 20 18 17 38 38 H 0.96700 * 114.00000 * 179.97438 * 21 20 18 39 39 H 1.08993 * 109.47343 * 174.99819 * 22 18 17 40 40 H 1.08999 * 109.46990 * 54.99241 * 22 18 17 41 41 H 1.09001 * 110.84493 * 337.32273 * 25 23 22 42 42 H 1.08999 * 110.84468 * 100.93710 * 25 23 22 43 43 H 1.08998 * 111.12531 * 276.21631 * 26 25 23 44 44 H 1.09002 * 111.16052 * 152.06658 * 26 25 23 45 45 H 1.09000 * 110.30570 * 204.64032 * 27 26 25 46 46 H 1.08995 * 110.39231 * 82.51379 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0464 -1.4002 5 1 1.4388 2.6527 0.6999 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2126 0.0001 9 6 1.3010 -2.4366 0.0005 10 6 2.0086 -3.6517 0.0016 11 6 1.3033 -4.8415 0.0022 12 6 -0.0827 -4.7934 0.0068 13 6 -0.7277 -3.5550 0.0004 14 7 -2.1193 -3.5048 0.0001 15 6 -2.7509 -2.3199 -0.1160 16 8 -2.1091 -1.2873 -0.1265 17 7 -4.0941 -2.2795 -0.2205 18 6 -4.7806 -0.9916 -0.3473 19 1 -4.1653 -0.3079 -0.9322 20 6 -5.0177 -0.4009 1.0441 21 8 -5.9184 -1.2396 1.7703 22 6 -6.1241 -1.1967 -1.0500 23 6 -5.8821 -1.6694 -2.4849 24 1 -5.2205 -0.9711 -2.9976 25 6 -7.2265 -1.7687 -3.2374 26 6 -7.0379 -3.0592 -4.0806 27 6 -6.1701 -3.9127 -3.1217 28 8 -5.2950 -2.9759 -2.4737 29 7 -0.0357 -2.4317 -0.0001 30 1 -0.4851 0.8400 -0.0004 31 1 3.0885 -3.6558 0.0029 32 1 1.8217 -5.7890 0.0034 33 1 -0.6588 -5.7070 0.0113 34 1 -2.6342 -4.3227 0.0837 35 1 -4.6061 -3.1034 -0.2124 36 1 -4.0697 -0.3374 1.5782 37 1 -5.4476 0.5959 0.9471 38 1 -6.1144 -0.9257 2.6637 39 1 -6.6735 -0.2556 -1.0653 40 1 -6.7040 -1.9474 -0.5131 41 1 -8.0552 -1.8798 -2.5380 42 1 -7.3751 -0.9024 -3.8820 43 1 -6.5064 -2.8480 -5.0084 44 1 -7.9944 -3.5423 -4.2798 45 1 -5.5909 -4.6439 -3.6855 46 1 -6.7986 -4.4147 -2.3861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414490717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:43 Heat of formation + Delta-G solvation = -89.370299 kcal Electronic energy + Delta-G solvation = -30081.887693 eV Core-core repulsion = 25971.558572 eV Total energy + Delta-G solvation = -4110.329121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.19294 -40.41409 -39.47693 -38.02829 -35.96067 -35.43331 -34.74771 -33.18388 -32.46003 -32.11483 -30.75224 -29.48069 -27.37702 -26.47761 -24.19581 -23.21481 -22.78370 -22.12161 -21.56845 -21.16685 -19.74061 -18.73284 -18.26124 -17.96611 -17.70024 -16.87933 -16.67854 -16.30983 -16.22112 -15.91665 -15.58630 -15.38497 -15.15382 -14.67184 -14.64121 -14.41040 -14.23452 -14.11241 -13.83553 -13.66256 -13.04680 -12.93602 -12.83938 -12.69319 -12.54433 -12.52510 -12.30567 -12.28559 -11.97215 -11.73874 -11.66500 -11.57201 -11.42786 -10.92977 -10.81449 -10.68687 -10.37234 -9.85415 -9.59769 -9.04400 -8.71096 -7.97530 -6.37817 1.01012 1.32078 1.39969 1.52406 1.55417 1.95527 2.28928 2.68500 2.99289 3.09247 3.44163 3.52883 3.63949 3.67747 4.03235 4.10342 4.13521 4.23209 4.29292 4.38838 4.46418 4.49288 4.57658 4.67000 4.76349 4.84577 4.87585 4.90070 4.93782 4.97719 4.99103 5.02127 5.06700 5.10566 5.22572 5.32004 5.39148 5.70927 5.90983 5.93451 5.97019 6.11316 6.25904 6.38310 6.49250 6.86525 6.88660 7.11887 7.39578 8.15352 8.44098 8.63140 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.003791 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.090384 B = 7383.254623 C = 8326.140941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.682 5.682 2 C 0.009 3.991 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.468 4.468 8 H 0.085 0.915 9 C 0.237 3.763 10 C -0.333 4.333 11 C -0.033 4.033 12 C -0.350 4.350 13 C 0.367 3.633 14 N -0.664 5.664 15 C 0.660 3.340 16 O -0.521 6.521 17 N -0.710 5.710 18 C 0.173 3.827 19 H 0.066 0.934 20 C 0.072 3.928 21 O -0.574 6.574 22 C -0.113 4.113 23 C 0.075 3.925 24 H 0.056 0.944 25 C -0.141 4.141 26 C -0.151 4.151 27 C 0.039 3.961 28 O -0.394 6.394 29 N -0.504 5.504 30 H 0.268 0.732 31 H 0.104 0.896 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.412 0.588 35 H 0.400 0.600 36 H 0.016 0.984 37 H 0.073 0.927 38 H 0.391 0.609 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.078 0.922 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.303 -2.442 -3.430 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.301 5.301 2 C -0.216 4.216 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.499 4.499 8 H 0.103 0.897 9 C 0.111 3.889 10 C -0.356 4.356 11 C -0.057 4.057 12 C -0.375 4.375 13 C 0.127 3.873 14 N -0.314 5.314 15 C 0.359 3.641 16 O -0.390 6.390 17 N -0.369 5.369 18 C 0.067 3.933 19 H 0.084 0.916 20 C -0.007 4.007 21 O -0.381 6.381 22 C -0.151 4.151 23 C 0.017 3.983 24 H 0.074 0.926 25 C -0.179 4.179 26 C -0.189 4.189 27 C -0.037 4.037 28 O -0.314 6.314 29 N -0.223 5.223 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.155 0.845 33 H 0.146 0.854 34 H 0.248 0.752 35 H 0.235 0.765 36 H 0.035 0.965 37 H 0.091 0.909 38 H 0.240 0.760 39 H 0.124 0.876 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.120 0.880 45 H 0.096 0.904 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.180 -0.871 -3.921 20.575 hybrid contribution 0.578 -0.552 0.502 0.944 sum -19.602 -1.422 -3.419 19.949 Atomic orbital electron populations 1.70591 1.07084 1.27697 1.24706 1.27047 0.96032 1.03899 0.94650 0.85353 0.79139 0.76998 0.79056 1.19192 1.19757 1.17981 1.19880 0.94352 0.90511 1.45145 0.89732 1.18913 0.88002 0.93393 0.88571 1.21801 0.99144 0.93873 1.20779 1.20998 0.93381 0.97331 0.94018 1.20906 0.95207 0.95537 1.25888 1.18868 0.84237 0.91077 0.93092 1.42436 1.03841 1.09148 1.75935 1.16719 0.82918 0.84690 0.79822 1.91339 1.64123 1.31370 1.52170 1.44836 1.03295 1.09492 1.79260 1.20769 0.93451 0.84997 0.94091 0.91578 1.22505 0.91657 0.93618 0.92931 1.86387 1.66234 1.53408 1.32057 1.22089 0.94994 1.03734 0.94310 1.22829 0.94604 0.85199 0.95673 0.92558 1.23150 0.96448 0.99154 0.99122 1.23239 1.01397 0.95790 0.98443 1.23539 0.92664 0.92567 0.94943 1.88542 1.44955 1.18367 1.79528 1.68688 1.07086 1.25160 1.21397 0.92122 0.87786 0.84549 0.85435 0.75152 0.76515 0.96535 0.90923 0.76005 0.87560 0.89747 0.88874 0.89078 0.91115 0.87974 0.90357 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -40.85 8.99 21.84 0.20 -40.65 16 2 C 0.01 0.53 5.50 85.29 0.47 1.00 16 3 Si 0.97 42.07 29.56 68.60 2.03 44.10 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.47 -27.77 9.14 23.46 0.21 -27.56 16 8 H 0.08 4.70 7.85 -2.91 -0.02 4.67 16 9 C 0.24 14.36 6.55 40.20 0.26 14.62 16 10 C -0.33 -17.69 9.83 22.87 0.22 -17.46 16 11 C -0.03 -1.53 10.15 22.40 0.23 -1.30 16 12 C -0.35 -16.09 9.95 22.72 0.23 -15.86 16 13 C 0.37 19.20 7.43 133.24 0.99 20.19 16 14 N -0.66 -28.90 5.39 -322.13 -1.74 -30.64 16 15 C 0.66 29.80 8.49 179.05 1.52 31.32 16 16 O -0.52 -28.85 11.77 -3.97 -0.05 -28.90 16 17 N -0.71 -23.84 3.88 -457.82 -1.78 -25.62 16 18 C 0.17 5.06 2.37 44.99 0.11 5.17 16 19 H 0.07 2.35 7.58 -2.39 -0.02 2.33 16 20 C 0.07 1.94 6.85 71.98 0.49 2.43 16 21 O -0.57 -13.00 12.83 -148.98 -1.91 -14.91 16 22 C -0.11 -2.31 4.13 30.59 0.13 -2.18 16 23 C 0.07 1.60 3.52 31.07 0.11 1.71 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 C -0.14 -1.95 6.54 31.86 0.21 -1.74 16 26 C -0.15 -2.07 7.16 32.05 0.23 -1.84 16 27 C 0.04 0.71 7.78 72.65 0.57 1.27 16 28 O -0.39 -10.13 8.92 -148.98 -1.33 -11.46 16 29 N -0.50 -30.62 5.74 -186.37 -1.07 -31.69 16 30 H 0.27 15.11 8.29 -92.71 -0.77 14.34 16 31 H 0.10 5.13 8.06 -2.91 -0.02 5.11 16 32 H 0.14 5.05 8.06 -2.91 -0.02 5.03 16 33 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.41 14.10 8.71 -92.71 -0.81 13.30 16 35 H 0.40 11.74 7.74 -92.71 -0.72 11.03 16 36 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.39 5.69 9.12 -74.06 -0.68 5.01 16 39 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.08 1.68 7.73 -2.39 -0.02 1.66 16 41 H 0.09 1.02 7.85 -2.39 -0.02 1.00 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -81.26 376.07 -0.84 -82.10 By element: Atomic # 1 Polarization: 49.05 SS G_CDS: -1.17 Total: 47.88 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 5.97 Total: 9.78 kcal Atomic # 7 Polarization: -124.21 SS G_CDS: -4.39 Total: -128.60 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -3.29 Total: -55.26 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -81.26 -0.84 -82.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414490717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.270 kcal (2) G-P(sol) polarization free energy of solvation -81.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds