Wall clock time and date at job start Tue Mar 31 2020 18:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86797 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47166 * 300.00289 * 3 2 1 6 6 H 1.48500 * 109.47073 * 60.00264 * 3 2 1 7 7 C 1.40028 * 119.99546 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99692 * 179.97438 * 7 2 1 9 9 C 1.41330 * 120.00458 * 359.97438 * 7 2 1 10 10 C 1.40605 * 119.78922 * 179.97438 * 9 7 2 11 11 C 1.38308 * 119.13437 * 180.02562 * 10 9 7 12 12 C 1.38692 * 118.66742 * 359.74840 * 11 10 9 13 13 C 1.39648 * 119.49379 * 0.50082 * 12 11 10 14 14 N 1.39250 * 119.57517 * 179.76832 * 13 12 11 15 15 C 1.34772 * 120.00395 * 185.40393 * 14 13 12 16 16 O 1.21584 * 119.99724 * 354.85379 * 15 14 13 17 17 N 1.34775 * 120.00223 * 174.85553 * 15 14 13 18 18 C 1.46502 * 119.99652 * 179.97438 * 17 15 14 19 19 H 1.08997 * 108.80005 * 36.43818 * 18 17 15 20 20 C 1.54241 * 108.89642 * 277.88042 * 18 17 15 21 21 C 1.50476 * 108.53213 * 159.27352 * 20 18 17 22 22 C 1.54063 * 112.49849 * 94.14423 * 21 20 18 23 23 H 1.08994 * 108.81442 * 79.15131 * 22 21 20 24 24 O 1.42907 * 108.81324 * 197.42868 * 22 21 20 25 25 C 1.54067 * 112.81978 * 318.28604 * 22 21 20 26 26 H 1.08990 * 108.79586 * 79.00829 * 25 22 21 27 27 O 1.42902 * 108.87729 * 197.50938 * 25 22 21 28 28 C 1.50474 * 112.49431 * 318.28307 * 25 22 21 29 29 C 1.45544 * 108.89589 * 155.00093 * 18 17 15 30 30 N 1.31930 * 120.85054 * 359.48480 * 13 12 11 31 31 H 0.96996 * 120.00392 * 359.97438 * 1 2 3 32 32 H 1.08004 * 120.43391 * 0.02562 * 10 9 7 33 33 H 1.07997 * 120.67182 * 180.02562 * 11 10 9 34 34 H 1.08005 * 120.25405 * 180.24287 * 12 11 10 35 35 H 0.97001 * 119.99861 * 5.39770 * 14 13 12 36 36 H 0.96994 * 120.00052 * 359.97438 * 17 15 14 37 37 H 1.09005 * 109.63024 * 278.98826 * 20 18 17 38 38 H 1.09000 * 109.62846 * 39.56139 * 20 18 17 39 39 H 1.08993 * 108.88013 * 214.92719 * 21 20 18 40 40 H 1.09006 * 108.86918 * 333.36666 * 21 20 18 41 41 H 0.96707 * 113.99492 * 303.28978 * 24 22 21 42 42 H 0.96704 * 113.99987 * 182.97504 * 27 25 22 43 43 H 1.09000 * 109.62742 * 213.85896 * 28 25 22 44 44 H 1.08993 * 109.63701 * 334.44959 * 28 25 22 45 45 H 1.09007 * 108.89422 * 61.92888 * 29 18 17 46 46 H 1.09001 * 108.89173 * 303.44963 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8826 2.3964 -1.2124 6 1 1.8827 2.3964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0010 9 6 1.3008 -2.4367 -0.0005 10 6 2.0083 -3.6518 -0.0016 11 6 1.3031 -4.8416 -0.0022 12 6 -0.0829 -4.7935 0.0038 13 6 -0.7279 -3.5549 -0.0006 14 7 -2.1195 -3.5047 0.0005 15 6 -2.7512 -2.3196 -0.1136 16 8 -2.1093 -1.2871 -0.1232 17 7 -4.0944 -2.2791 -0.2170 18 6 -4.7810 -0.9908 -0.3404 19 1 -4.1690 -0.3233 -0.9470 20 6 -4.9473 -0.3768 1.0647 21 6 -5.1652 1.1047 0.9166 22 6 -6.6589 1.4810 0.8881 23 1 -7.0408 1.4813 1.9089 24 8 -6.7922 2.7976 0.3488 25 6 -7.5037 0.5096 0.0417 26 1 -7.6950 -0.3903 0.6262 27 8 -8.7518 1.1324 -0.2690 28 6 -6.8209 0.1207 -1.2416 29 6 -6.0567 -1.1988 -1.0093 30 7 -0.0358 -2.4317 0.0000 31 1 -0.4850 0.8400 0.0004 32 1 3.0884 -3.6560 -0.0021 33 1 1.8213 -5.7891 -0.0026 34 1 -0.6591 -5.7070 0.0074 35 1 -2.6343 -4.3226 0.0832 36 1 -4.6064 -3.1028 -0.2097 37 1 -5.8079 -0.8256 1.5610 38 1 -4.0471 -0.5575 1.6522 39 1 -4.6884 1.6166 1.7524 40 1 -4.6996 1.4385 -0.0108 41 1 -6.2891 3.4712 0.8266 42 1 -9.3613 0.5670 -0.7629 43 1 -7.5660 -0.0206 -2.0245 44 1 -6.1206 0.9025 -1.5354 45 1 -6.6717 -1.8602 -0.3989 46 1 -5.8765 -1.6766 -1.9723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414494709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:31 Heat of formation + Delta-G solvation = -67.766999 kcal Electronic energy + Delta-G solvation = -29841.813402 eV Core-core repulsion = 25732.421070 eV Total energy + Delta-G solvation = -4109.392332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.26285 -39.14962 -37.77126 -36.24034 -36.19131 -34.00912 -33.01736 -32.83981 -31.73327 -30.27515 -29.54391 -28.37712 -25.53426 -24.63875 -24.20415 -22.10768 -21.22655 -20.73663 -19.86678 -19.63618 -18.01228 -17.91407 -17.25542 -16.76045 -16.45734 -15.86306 -15.25567 -14.87071 -14.57685 -14.44995 -14.36455 -13.77209 -13.67870 -13.59769 -13.44739 -13.23503 -13.07096 -12.83103 -12.55401 -12.17999 -11.97128 -11.78163 -11.54934 -11.39419 -11.17093 -10.92051 -10.88703 -10.68115 -10.61089 -10.44776 -10.40265 -10.28267 -9.89047 -9.80354 -9.66661 -9.07107 -9.00795 -8.46317 -7.92941 -7.18632 -6.91727 -6.08960 -4.36657 2.85552 3.14580 3.18965 3.21904 3.22377 3.28679 3.90829 4.08128 4.08659 4.22730 4.39653 4.64904 4.73076 4.89308 4.92841 4.95205 4.98563 5.11925 5.15077 5.33399 5.43710 5.61989 5.69982 5.79600 5.87568 5.92094 6.03819 6.07831 6.10916 6.21623 6.29016 6.40578 6.50193 6.64439 6.82339 6.87287 7.02576 7.26270 7.38861 7.42429 7.60735 7.64496 7.76985 7.83950 8.19970 8.32792 8.69223 8.82884 9.08917 9.62747 10.29599 10.51850 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013019 B = 0.003516 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.262791 B = 7960.966360 C = 9803.999740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.647 5.647 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.307 4.307 11 C -0.036 4.036 12 C -0.359 4.359 13 C 0.387 3.613 14 N -0.674 5.674 15 C 0.662 3.338 16 O -0.460 6.460 17 N -0.760 5.760 18 C 0.171 3.829 19 H 0.086 0.914 20 C -0.124 4.124 21 C -0.148 4.148 22 C 0.116 3.884 23 H 0.052 0.948 24 O -0.554 6.554 25 C 0.118 3.882 26 H 0.061 0.939 27 O -0.558 6.558 28 C -0.142 4.142 29 C -0.127 4.127 30 N -0.471 5.471 31 H 0.270 0.730 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.394 0.606 36 H 0.382 0.618 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.374 0.626 42 H 0.372 0.628 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.385 -0.584 0.589 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.266 5.266 2 C -0.172 4.172 3 Si 0.717 3.283 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.330 4.330 11 C -0.060 4.060 12 C -0.385 4.385 13 C 0.147 3.853 14 N -0.323 5.323 15 C 0.360 3.640 16 O -0.324 6.324 17 N -0.419 5.419 18 C 0.065 3.935 19 H 0.104 0.896 20 C -0.163 4.163 21 C -0.186 4.186 22 C 0.057 3.943 23 H 0.070 0.930 24 O -0.359 6.359 25 C 0.059 3.941 26 H 0.079 0.921 27 O -0.362 6.362 28 C -0.180 4.180 29 C -0.165 4.165 30 N -0.190 5.190 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.227 0.773 36 H 0.214 0.786 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.220 0.780 42 H 0.219 0.781 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.485 1.625 0.454 16.571 hybrid contribution 0.468 -1.364 0.218 1.459 sum -16.017 0.261 0.672 16.033 Atomic orbital electron populations 1.70363 1.05536 1.27082 1.23593 1.26182 0.95138 1.00460 0.95454 0.86511 0.80992 0.82472 0.78319 1.18626 1.20100 1.20134 1.19602 0.94039 0.89377 1.42557 0.90002 1.18399 0.87190 0.91940 0.87893 1.21622 0.98525 0.93562 1.19291 1.20542 0.93140 0.96505 0.95859 1.20439 0.94752 0.94813 1.28525 1.18341 0.82484 0.90860 0.93576 1.42586 1.05220 1.07971 1.76489 1.16466 0.81446 0.85477 0.80566 1.91386 1.62302 1.29787 1.48893 1.45542 1.05759 1.08205 1.82347 1.19562 0.92668 0.85464 0.95805 0.89619 1.21684 1.02438 0.94255 0.97895 1.22019 0.94998 0.97664 1.03908 1.22305 0.93545 0.83012 0.95483 0.93001 1.86628 1.73331 1.17010 1.58887 1.21700 0.83913 0.93755 0.94744 0.92091 1.86633 1.26799 1.44594 1.78215 1.21999 1.00732 0.97587 0.97729 1.20746 0.96429 0.97843 1.01508 1.68696 1.06825 1.23112 1.20334 0.91799 0.88631 0.88676 0.89234 0.77346 0.78619 0.92210 0.90149 0.91211 0.90219 0.77984 0.78133 0.90693 0.89935 0.91762 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -17.91 8.99 55.55 0.50 -17.41 16 2 C 0.06 1.51 5.50 -17.34 -0.10 1.41 16 3 Si 0.89 19.33 29.56 -169.99 -5.02 14.31 16 4 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.43 -11.77 9.14 -37.74 -0.34 -12.11 16 8 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 9 C 0.27 7.66 6.55 -85.00 -0.56 7.11 16 10 C -0.31 -7.79 9.83 -38.66 -0.38 -8.17 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.36 -8.09 9.96 -38.89 -0.39 -8.48 16 13 C 0.39 9.46 7.43 -154.98 -1.15 8.31 16 14 N -0.67 -13.20 5.39 -15.79 -0.09 -13.29 16 15 C 0.66 13.18 8.26 -86.92 -0.72 12.46 16 16 O -0.46 -11.40 11.78 5.29 0.06 -11.33 16 17 N -0.76 -10.62 5.03 -61.52 -0.31 -10.93 16 18 C 0.17 2.17 1.94 -70.80 -0.14 2.04 16 19 H 0.09 1.38 6.91 -51.93 -0.36 1.02 16 20 C -0.12 -1.53 5.18 -27.34 -0.14 -1.67 16 21 C -0.15 -1.70 4.88 -27.44 -0.13 -1.83 16 22 C 0.12 1.24 3.26 -25.62 -0.08 1.16 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 O -0.55 -6.54 12.77 -54.14 -0.69 -7.23 16 25 C 0.12 1.15 2.75 -27.44 -0.08 1.07 16 26 H 0.06 0.51 6.63 -51.93 -0.34 0.17 16 27 O -0.56 -5.85 12.69 -54.14 -0.69 -6.53 16 28 C -0.14 -1.34 5.31 -27.34 -0.15 -1.48 16 29 C -0.13 -1.19 4.60 -29.60 -0.14 -1.33 16 30 N -0.47 -13.27 5.74 -10.26 -0.06 -13.33 16 31 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 32 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 33 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.39 5.90 8.71 -40.82 -0.36 5.54 16 36 H 0.38 4.05 8.57 -40.82 -0.35 3.70 16 37 H 0.06 0.62 6.97 -51.93 -0.36 0.26 16 38 H 0.08 1.27 7.90 -51.93 -0.41 0.86 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.03 6.63 -51.93 -0.34 0.69 16 41 H 0.37 2.99 9.04 45.56 0.41 3.40 16 42 H 0.37 2.19 8.92 45.56 0.41 2.60 16 43 H 0.07 0.60 7.84 -51.93 -0.41 0.19 16 44 H 0.08 0.95 6.98 -51.93 -0.36 0.59 16 45 H 0.06 0.49 7.47 -51.93 -0.39 0.10 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -35.76 365.31 -10.62 -46.38 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -4.95 Total: 16.59 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -4.89 Total: -2.74 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.05 Total: -54.95 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -1.32 Total: -25.10 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.76 -10.62 -46.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414494709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.382 kcal (2) G-P(sol) polarization free energy of solvation -35.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds