Wall clock time and date at job start Tue Mar 31 2020 18:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86797 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47166 * 300.00289 * 3 2 1 6 6 H 1.48500 * 109.47073 * 60.00264 * 3 2 1 7 7 C 1.40028 * 119.99546 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99692 * 179.97438 * 7 2 1 9 9 C 1.41330 * 120.00458 * 359.97438 * 7 2 1 10 10 C 1.40605 * 119.78922 * 179.97438 * 9 7 2 11 11 C 1.38308 * 119.13437 * 180.02562 * 10 9 7 12 12 C 1.38692 * 118.66742 * 359.74840 * 11 10 9 13 13 C 1.39648 * 119.49379 * 0.50082 * 12 11 10 14 14 N 1.39250 * 119.57517 * 179.76832 * 13 12 11 15 15 C 1.34772 * 120.00395 * 185.40393 * 14 13 12 16 16 O 1.21584 * 119.99724 * 354.85379 * 15 14 13 17 17 N 1.34775 * 120.00223 * 174.85553 * 15 14 13 18 18 C 1.46502 * 119.99652 * 179.97438 * 17 15 14 19 19 H 1.08997 * 108.80005 * 36.43818 * 18 17 15 20 20 C 1.54241 * 108.89642 * 277.88042 * 18 17 15 21 21 C 1.50476 * 108.53213 * 159.27352 * 20 18 17 22 22 C 1.54063 * 112.49849 * 94.14423 * 21 20 18 23 23 H 1.08994 * 108.81442 * 79.15131 * 22 21 20 24 24 O 1.42907 * 108.81324 * 197.42868 * 22 21 20 25 25 C 1.54067 * 112.81978 * 318.28604 * 22 21 20 26 26 H 1.08990 * 108.79586 * 79.00829 * 25 22 21 27 27 O 1.42902 * 108.87729 * 197.50938 * 25 22 21 28 28 C 1.50474 * 112.49431 * 318.28307 * 25 22 21 29 29 C 1.45544 * 108.89589 * 155.00093 * 18 17 15 30 30 N 1.31930 * 120.85054 * 359.48480 * 13 12 11 31 31 H 0.96996 * 120.00392 * 359.97438 * 1 2 3 32 32 H 1.08004 * 120.43391 * 0.02562 * 10 9 7 33 33 H 1.07997 * 120.67182 * 180.02562 * 11 10 9 34 34 H 1.08005 * 120.25405 * 180.24287 * 12 11 10 35 35 H 0.97001 * 119.99861 * 5.39770 * 14 13 12 36 36 H 0.96994 * 120.00052 * 359.97438 * 17 15 14 37 37 H 1.09005 * 109.63024 * 278.98826 * 20 18 17 38 38 H 1.09000 * 109.62846 * 39.56139 * 20 18 17 39 39 H 1.08993 * 108.88013 * 214.92719 * 21 20 18 40 40 H 1.09006 * 108.86918 * 333.36666 * 21 20 18 41 41 H 0.96707 * 113.99492 * 303.28978 * 24 22 21 42 42 H 0.96704 * 113.99987 * 182.97504 * 27 25 22 43 43 H 1.09000 * 109.62742 * 213.85896 * 28 25 22 44 44 H 1.08993 * 109.63701 * 334.44959 * 28 25 22 45 45 H 1.09007 * 108.89422 * 61.92888 * 29 18 17 46 46 H 1.09001 * 108.89173 * 303.44963 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8826 2.3964 -1.2124 6 1 1.8827 2.3964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0010 9 6 1.3008 -2.4367 -0.0005 10 6 2.0083 -3.6518 -0.0016 11 6 1.3031 -4.8416 -0.0022 12 6 -0.0829 -4.7935 0.0038 13 6 -0.7279 -3.5549 -0.0006 14 7 -2.1195 -3.5047 0.0005 15 6 -2.7512 -2.3196 -0.1136 16 8 -2.1093 -1.2871 -0.1232 17 7 -4.0944 -2.2791 -0.2170 18 6 -4.7810 -0.9908 -0.3404 19 1 -4.1690 -0.3233 -0.9470 20 6 -4.9473 -0.3768 1.0647 21 6 -5.1652 1.1047 0.9166 22 6 -6.6589 1.4810 0.8881 23 1 -7.0408 1.4813 1.9089 24 8 -6.7922 2.7976 0.3488 25 6 -7.5037 0.5096 0.0417 26 1 -7.6950 -0.3903 0.6262 27 8 -8.7518 1.1324 -0.2690 28 6 -6.8209 0.1207 -1.2416 29 6 -6.0567 -1.1988 -1.0093 30 7 -0.0358 -2.4317 0.0000 31 1 -0.4850 0.8400 0.0004 32 1 3.0884 -3.6560 -0.0021 33 1 1.8213 -5.7891 -0.0026 34 1 -0.6591 -5.7070 0.0074 35 1 -2.6343 -4.3226 0.0832 36 1 -4.6064 -3.1028 -0.2097 37 1 -5.8079 -0.8256 1.5610 38 1 -4.0471 -0.5575 1.6522 39 1 -4.6884 1.6166 1.7524 40 1 -4.6996 1.4385 -0.0108 41 1 -6.2891 3.4712 0.8266 42 1 -9.3613 0.5670 -0.7629 43 1 -7.5660 -0.0206 -2.0245 44 1 -6.1206 0.9025 -1.5354 45 1 -6.6717 -1.8602 -0.3989 46 1 -5.8765 -1.6766 -1.9723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414494709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:30 Heat of formation + Delta-G solvation = -96.212335 kcal Electronic energy + Delta-G solvation = -29843.046884 eV Core-core repulsion = 25732.421070 eV Total energy + Delta-G solvation = -4110.625814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.45410 -40.52054 -39.38486 -37.39315 -37.00217 -35.80864 -34.80270 -34.10555 -32.62482 -32.17955 -31.05797 -29.73185 -27.42343 -25.64157 -25.12523 -23.79429 -23.05362 -21.77757 -21.37418 -20.59976 -19.75142 -18.83596 -18.62686 -18.10197 -17.62751 -17.14280 -16.43678 -16.31346 -16.24289 -15.90168 -15.67841 -15.50676 -14.84672 -14.74375 -14.60954 -14.42751 -14.25330 -14.12363 -13.98254 -13.70844 -13.44310 -12.95132 -12.84136 -12.71292 -12.52772 -12.42550 -12.30227 -12.26154 -11.85772 -11.73742 -11.63950 -11.48698 -11.25562 -11.07616 -10.84896 -10.77122 -10.61310 -9.88788 -9.77768 -9.08114 -8.75445 -8.01017 -6.39448 0.98166 1.29945 1.38832 1.51339 1.53029 1.83436 2.26582 2.61133 3.05635 3.16901 3.31935 3.40605 3.58861 3.78460 4.02767 4.08545 4.10407 4.11725 4.23680 4.33003 4.35232 4.38473 4.59400 4.74506 4.80736 4.83969 4.86459 4.88493 4.98051 4.98617 5.08939 5.10424 5.13344 5.26338 5.32544 5.35633 5.41253 5.69094 5.79249 5.89151 5.94621 6.07546 6.35129 6.45510 6.81219 6.83862 7.00819 7.09755 7.32720 8.08188 8.40758 8.59651 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013019 B = 0.003516 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.262791 B = 7960.966360 C = 9803.999740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.681 5.681 2 C 0.011 3.989 3 Si 0.970 3.030 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.466 4.466 8 H 0.084 0.916 9 C 0.237 3.763 10 C -0.332 4.332 11 C -0.034 4.034 12 C -0.347 4.347 13 C 0.366 3.634 14 N -0.663 5.663 15 C 0.655 3.345 16 O -0.512 6.512 17 N -0.735 5.735 18 C 0.176 3.824 19 H 0.044 0.956 20 C -0.115 4.115 21 C -0.139 4.139 22 C 0.116 3.884 23 H 0.062 0.938 24 O -0.573 6.573 25 C 0.116 3.884 26 H 0.085 0.915 27 O -0.577 6.577 28 C -0.136 4.136 29 C -0.119 4.119 30 N -0.506 5.506 31 H 0.267 0.733 32 H 0.103 0.897 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.417 0.583 36 H 0.404 0.596 37 H 0.090 0.910 38 H 0.040 0.960 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.386 0.614 42 H 0.392 0.608 43 H 0.095 0.905 44 H 0.053 0.947 45 H 0.097 0.903 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.489 -2.364 0.727 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.300 5.300 2 C -0.214 4.214 3 Si 0.791 3.209 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.497 4.497 8 H 0.102 0.898 9 C 0.112 3.888 10 C -0.355 4.355 11 C -0.058 4.058 12 C -0.372 4.372 13 C 0.126 3.874 14 N -0.313 5.313 15 C 0.353 3.647 16 O -0.380 6.380 17 N -0.395 5.395 18 C 0.071 3.929 19 H 0.062 0.938 20 C -0.154 4.154 21 C -0.178 4.178 22 C 0.057 3.943 23 H 0.080 0.920 24 O -0.380 6.380 25 C 0.058 3.942 26 H 0.103 0.897 27 O -0.385 6.385 28 C -0.174 4.174 29 C -0.157 4.157 30 N -0.226 5.226 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.254 0.746 36 H 0.240 0.760 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.235 0.765 42 H 0.242 0.758 43 H 0.114 0.886 44 H 0.072 0.928 45 H 0.115 0.885 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.666 -0.227 0.589 18.677 hybrid contribution 1.034 -0.976 0.170 1.432 sum -17.632 -1.203 0.759 17.689 Atomic orbital electron populations 1.70566 1.07004 1.27584 1.24869 1.27000 0.96012 1.03777 0.94646 0.85349 0.79728 0.77506 0.78317 1.17737 1.19759 1.19578 1.19899 0.94344 0.90498 1.44985 0.89810 1.18880 0.88004 0.93349 0.88616 1.21799 0.99150 0.93898 1.20650 1.21024 0.93562 0.97289 0.93976 1.20923 0.95110 0.95613 1.25565 1.18847 0.84307 0.91002 0.93277 1.42425 1.03811 1.09134 1.75963 1.16767 0.82965 0.84825 0.80132 1.91381 1.64007 1.31551 1.51014 1.45247 1.03770 1.09851 1.80659 1.19619 0.93520 0.83986 0.95806 0.93818 1.21569 1.01715 0.94959 0.97151 1.21910 0.96161 0.97137 1.02553 1.22362 0.92576 0.82965 0.96435 0.91969 1.86591 1.73733 1.17864 1.59798 1.21751 0.83662 0.94013 0.94795 0.89693 1.86585 1.27251 1.45945 1.78750 1.21944 1.00477 0.96543 0.98476 1.20657 0.94662 0.98531 1.01807 1.68661 1.07143 1.25371 1.21386 0.92195 0.87908 0.84537 0.85034 0.74622 0.75978 0.89156 0.94070 0.91499 0.92546 0.76517 0.75846 0.88638 0.92787 0.88479 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -39.90 8.99 21.84 0.20 -39.71 16 2 C 0.01 0.63 5.50 85.29 0.47 1.10 16 3 Si 0.97 41.55 29.56 68.60 2.03 43.58 16 4 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.47 -27.05 9.14 23.46 0.21 -26.84 16 8 H 0.08 4.58 7.85 -2.91 -0.02 4.55 16 9 C 0.24 13.92 6.55 40.20 0.26 14.19 16 10 C -0.33 -17.02 9.83 22.86 0.22 -16.79 16 11 C -0.03 -1.50 10.15 22.40 0.23 -1.28 16 12 C -0.35 -14.81 9.96 22.72 0.23 -14.59 16 13 C 0.37 17.82 7.43 133.24 0.99 18.81 16 14 N -0.66 -25.43 5.39 -322.13 -1.74 -27.17 16 15 C 0.65 26.42 8.26 179.06 1.48 27.89 16 16 O -0.51 -26.72 11.78 -3.98 -0.05 -26.77 16 17 N -0.74 -19.88 5.03 -466.83 -2.35 -22.23 16 18 C 0.18 4.45 1.94 43.13 0.08 4.53 16 19 H 0.04 1.50 6.91 -2.39 -0.02 1.49 16 20 C -0.12 -2.83 5.18 30.20 0.16 -2.67 16 21 C -0.14 -3.31 4.88 30.14 0.15 -3.16 16 22 C 0.12 2.36 3.26 31.31 0.10 2.47 16 23 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 24 O -0.57 -13.36 12.77 -130.90 -1.67 -15.03 16 25 C 0.12 1.98 2.75 30.14 0.08 2.06 16 26 H 0.09 1.05 6.63 -2.39 -0.02 1.04 16 27 O -0.58 -10.59 12.69 -130.90 -1.66 -12.26 16 28 C -0.14 -2.32 5.31 30.20 0.16 -2.16 16 29 C -0.12 -1.94 4.60 28.74 0.13 -1.81 16 30 N -0.51 -29.49 5.74 -186.37 -1.07 -30.55 16 31 H 0.27 14.82 8.29 -92.71 -0.77 14.05 16 32 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 33 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 34 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 35 H 0.42 11.45 8.71 -92.71 -0.81 10.64 16 36 H 0.40 7.43 8.57 -92.71 -0.79 6.63 16 37 H 0.09 1.65 6.97 -2.38 -0.02 1.63 16 38 H 0.04 1.35 7.90 -2.39 -0.02 1.33 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.06 1.60 6.63 -2.38 -0.02 1.58 16 41 H 0.39 6.25 9.04 -74.05 -0.67 5.58 16 42 H 0.39 3.37 8.92 -74.05 -0.66 2.71 16 43 H 0.10 1.25 7.84 -2.39 -0.02 1.24 16 44 H 0.05 1.25 6.98 -2.39 -0.02 1.23 16 45 H 0.10 1.02 7.47 -2.38 -0.02 1.00 16 46 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -83.31 365.31 -3.22 -86.53 By element: Atomic # 1 Polarization: 43.71 SS G_CDS: -1.87 Total: 41.84 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 4.96 Total: 1.77 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -4.96 Total: -119.65 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -3.38 Total: -54.06 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -83.31 -3.22 -86.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414494709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.681 kcal (2) G-P(sol) polarization free energy of solvation -83.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds