Wall clock time and date at job start Tue Mar 31 2020 18:45:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30741 * 1
3 3 Si 1.86800 * 120.00198 * 2 1
4 4 H 1.48500 * 109.47179 * 89.99787 * 3 2 1
5 5 H 1.48500 * 109.47486 * 210.00154 * 3 2 1
6 6 H 1.48508 * 109.46605 * 330.00166 * 3 2 1
7 7 C 1.40038 * 120.00194 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99592 * 15.96687 * 7 2 1
9 9 C 1.41329 * 119.99792 * 195.95928 * 7 2 1
10 10 C 1.40614 * 119.78416 * 188.66048 * 9 7 2
11 11 C 1.38313 * 119.12857 * 179.73133 * 10 9 7
12 12 C 1.38690 * 118.67009 * 0.53680 * 11 10 9
13 13 C 1.39647 * 119.49572 * 359.72624 * 12 11 10
14 14 N 1.39249 * 119.57454 * 179.97438 * 13 12 11
15 15 C 1.34779 * 120.00081 * 18.79051 * 14 13 12
16 16 O 1.21577 * 120.00140 * 5.78879 * 15 14 13
17 17 N 1.34773 * 120.00233 * 185.79003 * 15 14 13
18 18 C 1.46503 * 120.00200 * 179.97438 * 17 15 14
19 19 C 1.53001 * 109.46867 * 179.97438 * 18 17 15
20 20 C 1.53004 * 109.46782 * 179.97438 * 19 18 17
21 21 O 1.42904 * 109.53934 * 65.00358 * 20 19 18
22 22 C 1.53174 * 109.54520 * 304.82667 * 20 19 18
23 23 C 1.53104 * 109.15460 * 183.23903 * 22 20 19
24 24 O 1.42909 * 109.48707 * 57.47591 * 23 22 20
25 25 C 1.42906 * 114.09406 * 298.88597 * 24 23 22
26 26 C 1.53088 * 109.41497 * 61.15886 * 25 24 23
27 27 N 1.31927 * 120.85212 * 0.02562 * 13 12 11
28 28 H 0.97003 * 119.99756 * 174.93028 * 1 2 3
29 29 H 1.08002 * 120.43377 * 0.02562 * 10 9 7
30 30 H 1.08000 * 120.66626 * 180.26514 * 11 10 9
31 31 H 1.07997 * 120.25154 * 179.74886 * 12 11 10
32 32 H 0.97000 * 120.00437 * 198.78853 * 14 13 12
33 33 H 0.97008 * 119.99679 * 359.97438 * 17 15 14
34 34 H 1.08995 * 109.46670 * 299.99742 * 18 17 15
35 35 H 1.08991 * 109.47249 * 59.99898 * 18 17 15
36 36 H 1.08998 * 109.47172 * 299.99929 * 19 18 17
37 37 H 1.08999 * 109.47132 * 60.00272 * 19 18 17
38 38 H 0.96702 * 113.99766 * 180.02562 * 21 20 19
39 39 H 1.09000 * 109.51864 * 303.05250 * 22 20 19
40 40 H 1.08996 * 109.52339 * 63.24598 * 22 20 19
41 41 H 1.09000 * 109.41047 * 297.49432 * 23 22 20
42 42 H 1.09000 * 109.49326 * 177.50299 * 23 22 20
43 43 H 1.09005 * 109.48074 * 301.17638 * 25 24 23
44 44 H 1.08998 * 109.48696 * 181.14932 * 25 24 23
45 45 H 1.09003 * 109.52374 * 182.47955 * 26 25 24
46 46 H 1.08998 * 109.57265 * 62.32885 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3074 0.0000 0.0000
3 14 2.2415 1.6177 0.0000
4 1 2.4889 2.0464 1.4001
5 1 3.5390 1.4402 -0.7001
6 1 1.4388 2.6526 -0.7001
7 6 2.0076 -1.2127 0.0005
8 1 1.4988 -2.1301 -0.2563
9 6 3.3801 -1.2361 0.3371
10 6 4.1223 -2.4173 0.1614
11 6 5.4659 -2.4234 0.4899
12 6 6.0329 -1.2623 0.9937
13 6 5.2415 -0.1225 1.1504
14 7 5.8090 1.0440 1.6565
15 6 7.1470 1.2057 1.6377
16 8 7.8510 0.3828 1.0852
17 7 7.7044 2.2795 2.2314
18 6 9.1588 2.4550 2.2115
19 6 9.5271 3.7438 2.9492
20 6 11.0460 3.9267 2.9289
21 8 11.4858 4.1232 1.5835
22 6 11.7200 2.6807 3.5116
23 6 13.2336 2.9054 3.5620
24 8 13.5169 4.0709 4.3390
25 6 12.9517 5.2738 3.8138
26 6 11.4267 5.1451 3.7755
27 7 3.9628 -0.1369 0.8260
28 1 -0.4850 -0.8368 -0.0742
29 1 3.6506 -3.3068 -0.2294
30 1 6.0605 -3.3157 0.3609
31 1 7.0787 -1.2397 1.2623
32 1 5.2415 1.7403 2.0226
33 1 7.1426 2.9363 2.6720
34 1 9.6338 1.6061 2.7032
35 1 9.5032 2.5164 1.1793
36 1 9.0519 4.5925 2.4572
37 1 9.1826 3.6828 3.9815
38 1 12.4411 4.2458 1.4960
39 1 11.3458 2.5020 4.5196
40 1 11.4991 1.8189 2.8818
41 1 13.6134 3.0424 2.5495
42 1 13.7149 2.0396 4.0168
43 1 13.3278 5.4417 2.8045
44 1 13.2298 6.1141 4.4498
45 1 10.9963 6.0442 3.3344
46 1 11.0455 5.0182 4.7887
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001426189801.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:45:27
Heat of formation + Delta-G solvation = -101.266730 kcal
Electronic energy + Delta-G solvation = -28609.582999 eV
Core-core repulsion = 24498.738010 eV
Total energy + Delta-G solvation = -4110.844989 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.76851 -40.19212 -38.31188 -37.17231 -35.30764 -34.42610 -33.50333 -32.88805
-31.75436 -31.02218 -30.23961 -28.98784 -25.60581 -25.16645 -24.17821 -22.68171
-21.84183 -21.61264 -20.52007 -20.11014 -18.63301 -17.97602 -17.82850 -16.97282
-16.56979 -16.31815 -15.69818 -15.39530 -15.18657 -15.05366 -14.94888 -14.79864
-14.46538 -14.16050 -13.96792 -13.55939 -13.06566 -12.85682 -12.70623 -12.54808
-12.38811 -12.20009 -12.15534 -12.10924 -11.85473 -11.75030 -11.50149 -11.18025
-10.87136 -10.84286 -10.29498 -10.26699 -10.02760 -9.95401 -9.73800 -9.36562
-9.07258 -8.99014 -8.46975 -7.86864 -7.33760 -7.23485 -4.71786 2.44001
2.71597 2.74217 3.32955 3.44402 3.48732 3.66186 3.69061 3.91813
4.03937 4.14191 4.20419 4.35652 4.39025 4.43371 4.56747 4.64186
4.72100 4.84919 4.91689 5.06867 5.10580 5.15663 5.28741 5.38051
5.48058 5.55180 5.58743 5.62146 5.78880 5.84797 5.91989 6.14193
6.36936 6.47866 6.59302 6.63790 6.72560 6.94290 7.13348 7.22396
7.38262 7.47787 7.67439 7.81492 7.96033 8.24469 8.37780 8.67825
8.79895 9.49146 10.00598
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.023962 B = 0.002257 C = 0.002108
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1168.218880 B =12401.215054 C =13282.064038
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.806 5.806
2 C 0.049 3.951
3 Si 1.144 2.856
4 H -0.289 1.289
5 H -0.280 1.280
6 H -0.327 1.327
7 C -0.483 4.483
8 H 0.083 0.917
9 C 0.276 3.724
10 C -0.281 4.281
11 C -0.036 4.036
12 C -0.310 4.310
13 C 0.400 3.600
14 N -0.667 5.667
15 C 0.709 3.291
16 O -0.564 6.564
17 N -0.748 5.748
18 C 0.141 3.859
19 C -0.117 4.117
20 C 0.138 3.862
21 O -0.552 6.552
22 C -0.189 4.189
23 C 0.055 3.945
24 O -0.382 6.382
25 C 0.056 3.944
26 C -0.182 4.182
27 N -0.597 5.597
28 H 0.284 0.716
29 H 0.104 0.896
30 H 0.105 0.895
31 H 0.140 0.860
32 H 0.403 0.597
33 H 0.395 0.605
34 H 0.068 0.932
35 H 0.075 0.925
36 H 0.081 0.919
37 H 0.084 0.916
38 H 0.372 0.628
39 H 0.084 0.916
40 H 0.092 0.908
41 H 0.052 0.948
42 H 0.100 0.900
43 H 0.052 0.948
44 H 0.099 0.901
45 H 0.084 0.916
46 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.908 11.894 8.979 27.329
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.428 5.428
2 C -0.173 4.173
3 Si 0.977 3.023
4 H -0.216 1.216
5 H -0.207 1.207
6 H -0.260 1.260
7 C -0.515 4.515
8 H 0.101 0.899
9 C 0.152 3.848
10 C -0.303 4.303
11 C -0.061 4.061
12 C -0.335 4.335
13 C 0.168 3.832
14 N -0.314 5.314
15 C 0.409 3.591
16 O -0.439 6.439
17 N -0.404 5.404
18 C 0.017 3.983
19 C -0.155 4.155
20 C 0.097 3.903
21 O -0.358 6.358
22 C -0.226 4.226
23 C -0.021 4.021
24 O -0.301 6.301
25 C -0.021 4.021
26 C -0.220 4.220
27 N -0.322 5.322
28 H 0.095 0.905
29 H 0.122 0.878
30 H 0.123 0.877
31 H 0.158 0.842
32 H 0.237 0.763
33 H 0.229 0.771
34 H 0.086 0.914
35 H 0.093 0.907
36 H 0.099 0.901
37 H 0.102 0.898
38 H 0.220 0.780
39 H 0.103 0.897
40 H 0.110 0.890
41 H 0.070 0.930
42 H 0.118 0.882
43 H 0.070 0.930
44 H 0.117 0.883
45 H 0.103 0.897
46 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 22.269 13.323 8.707 27.372
hybrid contribution 0.282 -1.856 0.138 1.882
sum 22.551 11.467 8.845 26.801
Atomic orbital electron populations
1.70616 1.08255 1.32981 1.30904 1.27646 0.95226 1.05950 0.88445
0.82122 0.72774 0.70061 0.77299 1.21616 1.20717 1.26017 1.20639
0.93155 0.96956 1.40731 0.89859 1.18174 0.92916 0.86003 0.87735
1.21595 0.94680 0.99814 1.14217 1.20915 0.94309 0.96313 0.94524
1.21541 1.01960 0.92739 1.17226 1.17784 0.89505 0.83846 0.92023
1.42326 1.05564 1.20372 1.63184 1.15701 0.81670 0.82165 0.79599
1.90851 1.61275 1.43381 1.48440 1.45122 1.08142 1.26005 1.61174
1.21198 0.78763 0.96600 1.01733 1.21769 0.93294 0.98729 1.01684
1.21083 0.93956 0.93119 0.82141 1.86635 1.28006 1.94993 1.26206
1.22998 0.96627 0.99576 1.03440 1.22651 0.94835 0.88795 0.95831
1.87985 1.74685 1.15665 1.51716 1.22613 0.92156 0.87951 0.99357
1.22876 0.97523 0.99648 1.01939 1.66131 1.10181 1.30322 1.25591
0.90496 0.87773 0.87724 0.84233 0.76264 0.77114 0.91419 0.90655
0.90084 0.89773 0.77996 0.89699 0.88998 0.92977 0.88174 0.93029
0.88330 0.89724 0.89775
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -22.00 13.65 55.55 0.76 -21.24 16
2 C 0.05 1.34 5.51 -17.34 -0.10 1.24 16
3 Si 1.14 27.90 25.93 -169.99 -4.41 23.49 16
4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16
5 H -0.28 -7.06 6.55 56.52 0.37 -6.69 16
6 H -0.33 -7.84 7.11 56.52 0.40 -7.44 16
7 C -0.48 -13.31 9.51 -37.73 -0.36 -13.67 16
8 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16
9 C 0.28 7.39 6.27 -84.99 -0.53 6.86 16
10 C -0.28 -6.87 9.83 -38.66 -0.38 -7.25 16
11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16
12 C -0.31 -7.23 8.83 -38.89 -0.34 -7.57 16
13 C 0.40 9.44 7.51 -154.99 -1.16 8.28 16
14 N -0.67 -12.70 5.42 -15.79 -0.09 -12.79 16
15 C 0.71 12.42 8.40 -86.92 -0.73 11.69 16
16 O -0.56 -11.79 13.14 5.30 0.07 -11.72 16
17 N -0.75 -9.11 5.56 -65.23 -0.36 -9.47 16
18 C 0.14 1.50 5.09 -4.04 -0.02 1.48 16
19 C -0.12 -0.85 4.63 -26.73 -0.12 -0.98 16
20 C 0.14 0.92 0.80 -90.44 -0.07 0.85 16
21 O -0.55 -4.30 12.50 -35.23 -0.44 -4.74 16
22 C -0.19 -1.23 4.55 -26.59 -0.12 -1.35 16
23 C 0.06 0.33 6.59 37.21 0.25 0.58 16
24 O -0.38 -2.82 10.77 -35.23 -0.38 -3.20 16
25 C 0.06 0.29 6.59 37.20 0.25 0.54 16
26 C -0.18 -0.98 5.15 -26.59 -0.14 -1.12 16
27 N -0.60 -15.41 5.07 -10.26 -0.05 -15.46 16
28 H 0.28 7.42 8.73 -40.82 -0.36 7.07 16
29 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16
30 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16
31 H 0.14 3.21 5.33 -52.51 -0.28 2.93 16
32 H 0.40 6.60 8.84 -40.82 -0.36 6.24 16
33 H 0.40 3.61 8.49 -40.82 -0.35 3.27 16
34 H 0.07 0.74 6.43 -51.93 -0.33 0.41 16
35 H 0.08 0.96 7.83 -51.93 -0.41 0.56 16
36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16
38 H 0.37 1.87 5.97 45.56 0.27 2.14 16
39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
40 H 0.09 0.67 6.56 -51.93 -0.34 0.33 16
41 H 0.05 0.25 6.93 -51.93 -0.36 -0.11 16
42 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16
43 H 0.05 0.21 6.93 -51.93 -0.36 -0.15 16
44 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16
45 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
46 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16
LS Contribution 365.42 15.07 5.51 5.51
Total: -1.00 -33.78 365.42 -9.31 -43.09
By element:
Atomic # 1 Polarization: 14.09 SS G_CDS: -5.93 Total: 8.17 kcal
Atomic # 6 Polarization: 2.36 SS G_CDS: -3.99 Total: -1.63 kcal
Atomic # 7 Polarization: -59.21 SS G_CDS: 0.26 Total: -58.95 kcal
Atomic # 8 Polarization: -18.91 SS G_CDS: -0.75 Total: -19.66 kcal
Atomic # 14 Polarization: 27.90 SS G_CDS: -4.41 Total: 23.49 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -33.78 -9.31 -43.09 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001426189801.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.180 kcal
(2) G-P(sol) polarization free energy of solvation -33.778 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.958 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.087 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.267 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds