Wall clock time and date at job start Tue Mar 31 2020 18:45:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30741 * 1
3 3 Si 1.86800 * 120.00198 * 2 1
4 4 H 1.48500 * 109.47179 * 89.99787 * 3 2 1
5 5 H 1.48500 * 109.47486 * 210.00154 * 3 2 1
6 6 H 1.48508 * 109.46605 * 330.00166 * 3 2 1
7 7 C 1.40038 * 120.00194 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99592 * 15.96687 * 7 2 1
9 9 C 1.41329 * 119.99792 * 195.95928 * 7 2 1
10 10 C 1.40614 * 119.78416 * 188.66048 * 9 7 2
11 11 C 1.38313 * 119.12857 * 179.73133 * 10 9 7
12 12 C 1.38690 * 118.67009 * 0.53680 * 11 10 9
13 13 C 1.39647 * 119.49572 * 359.72624 * 12 11 10
14 14 N 1.39249 * 119.57454 * 179.97438 * 13 12 11
15 15 C 1.34779 * 120.00081 * 18.79051 * 14 13 12
16 16 O 1.21577 * 120.00140 * 5.78879 * 15 14 13
17 17 N 1.34773 * 120.00233 * 185.79003 * 15 14 13
18 18 C 1.46503 * 120.00200 * 179.97438 * 17 15 14
19 19 C 1.53001 * 109.46867 * 179.97438 * 18 17 15
20 20 C 1.53004 * 109.46782 * 179.97438 * 19 18 17
21 21 O 1.42904 * 109.53934 * 65.00358 * 20 19 18
22 22 C 1.53174 * 109.54520 * 304.82667 * 20 19 18
23 23 C 1.53104 * 109.15460 * 183.23903 * 22 20 19
24 24 O 1.42909 * 109.48707 * 57.47591 * 23 22 20
25 25 C 1.42906 * 114.09406 * 298.88597 * 24 23 22
26 26 C 1.53088 * 109.41497 * 61.15886 * 25 24 23
27 27 N 1.31927 * 120.85212 * 0.02562 * 13 12 11
28 28 H 0.97003 * 119.99756 * 174.93028 * 1 2 3
29 29 H 1.08002 * 120.43377 * 0.02562 * 10 9 7
30 30 H 1.08000 * 120.66626 * 180.26514 * 11 10 9
31 31 H 1.07997 * 120.25154 * 179.74886 * 12 11 10
32 32 H 0.97000 * 120.00437 * 198.78853 * 14 13 12
33 33 H 0.97008 * 119.99679 * 359.97438 * 17 15 14
34 34 H 1.08995 * 109.46670 * 299.99742 * 18 17 15
35 35 H 1.08991 * 109.47249 * 59.99898 * 18 17 15
36 36 H 1.08998 * 109.47172 * 299.99929 * 19 18 17
37 37 H 1.08999 * 109.47132 * 60.00272 * 19 18 17
38 38 H 0.96702 * 113.99766 * 180.02562 * 21 20 19
39 39 H 1.09000 * 109.51864 * 303.05250 * 22 20 19
40 40 H 1.08996 * 109.52339 * 63.24598 * 22 20 19
41 41 H 1.09000 * 109.41047 * 297.49432 * 23 22 20
42 42 H 1.09000 * 109.49326 * 177.50299 * 23 22 20
43 43 H 1.09005 * 109.48074 * 301.17638 * 25 24 23
44 44 H 1.08998 * 109.48696 * 181.14932 * 25 24 23
45 45 H 1.09003 * 109.52374 * 182.47955 * 26 25 24
46 46 H 1.08998 * 109.57265 * 62.32885 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3074 0.0000 0.0000
3 14 2.2415 1.6177 0.0000
4 1 2.4889 2.0464 1.4001
5 1 3.5390 1.4402 -0.7001
6 1 1.4388 2.6526 -0.7001
7 6 2.0076 -1.2127 0.0005
8 1 1.4988 -2.1301 -0.2563
9 6 3.3801 -1.2361 0.3371
10 6 4.1223 -2.4173 0.1614
11 6 5.4659 -2.4234 0.4899
12 6 6.0329 -1.2623 0.9937
13 6 5.2415 -0.1225 1.1504
14 7 5.8090 1.0440 1.6565
15 6 7.1470 1.2057 1.6377
16 8 7.8510 0.3828 1.0852
17 7 7.7044 2.2795 2.2314
18 6 9.1588 2.4550 2.2115
19 6 9.5271 3.7438 2.9492
20 6 11.0460 3.9267 2.9289
21 8 11.4858 4.1232 1.5835
22 6 11.7200 2.6807 3.5116
23 6 13.2336 2.9054 3.5620
24 8 13.5169 4.0709 4.3390
25 6 12.9517 5.2738 3.8138
26 6 11.4267 5.1451 3.7755
27 7 3.9628 -0.1369 0.8260
28 1 -0.4850 -0.8368 -0.0742
29 1 3.6506 -3.3068 -0.2294
30 1 6.0605 -3.3157 0.3609
31 1 7.0787 -1.2397 1.2623
32 1 5.2415 1.7403 2.0226
33 1 7.1426 2.9363 2.6720
34 1 9.6338 1.6061 2.7032
35 1 9.5032 2.5164 1.1793
36 1 9.0519 4.5925 2.4572
37 1 9.1826 3.6828 3.9815
38 1 12.4411 4.2458 1.4960
39 1 11.3458 2.5020 4.5196
40 1 11.4991 1.8189 2.8818
41 1 13.6134 3.0424 2.5495
42 1 13.7149 2.0396 4.0168
43 1 13.3278 5.4417 2.8045
44 1 13.2298 6.1141 4.4498
45 1 10.9963 6.0442 3.3344
46 1 11.0455 5.0182 4.7887
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001426189801.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:45:26
Heat of formation + Delta-G solvation = -126.612072 kcal
Electronic energy + Delta-G solvation = -28610.682055 eV
Core-core repulsion = 24498.738010 eV
Total energy + Delta-G solvation = -4111.944045 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.82539 -41.16151 -40.03346 -37.78727 -36.47762 -35.99235 -35.35515 -33.63167
-32.92832 -32.18955 -31.50916 -30.25608 -27.27403 -26.21240 -24.69121 -23.94916
-23.52697 -22.69375 -21.85830 -20.89009 -20.44596 -19.42276 -18.60408 -18.37518
-17.28874 -16.98344 -16.85284 -16.69426 -16.52214 -16.22640 -15.87369 -15.68346
-15.55653 -15.38377 -15.20166 -14.92145 -14.82699 -14.33813 -14.21874 -13.71370
-13.34227 -13.26284 -12.97811 -12.95346 -12.78346 -12.71176 -12.61819 -12.29094
-12.19354 -12.12998 -11.84394 -11.58697 -11.31628 -11.06653 -10.97610 -10.77207
-10.48119 -10.37686 -10.18024 -9.82171 -9.30614 -9.13811 -6.77699 0.60760
0.79965 1.39003 1.52910 1.66663 1.98317 2.02774 2.41238 2.66079
2.90588 3.03022 3.22864 3.53225 3.60139 3.72762 3.76370 3.95974
4.09186 4.13574 4.17773 4.27589 4.35880 4.42068 4.51949 4.65001
4.67429 4.72302 4.74978 4.78167 4.83454 4.84052 4.98720 5.01973
5.08178 5.16991 5.23951 5.36007 5.39395 5.40122 5.46751 5.70247
5.80027 5.94362 6.07008 6.21913 6.43485 6.63830 6.71200 6.86690
7.38970 7.56540 7.94451
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.023962 B = 0.002257 C = 0.002108
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1168.218880 B =12401.215054 C =13282.064038
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.825 5.825
2 C 0.021 3.979
3 Si 1.176 2.824
4 H -0.271 1.271
5 H -0.294 1.294
6 H -0.322 1.322
7 C -0.512 4.512
8 H 0.069 0.931
9 C 0.259 3.741
10 C -0.296 4.296
11 C -0.030 4.030
12 C -0.309 4.309
13 C 0.391 3.609
14 N -0.663 5.663
15 C 0.707 3.293
16 O -0.599 6.599
17 N -0.723 5.723
18 C 0.143 3.857
19 C -0.110 4.110
20 C 0.137 3.863
21 O -0.569 6.569
22 C -0.186 4.186
23 C 0.054 3.946
24 O -0.400 6.400
25 C 0.051 3.949
26 C -0.175 4.175
27 N -0.608 5.608
28 H 0.282 0.718
29 H 0.114 0.886
30 H 0.142 0.858
31 H 0.148 0.852
32 H 0.415 0.585
33 H 0.414 0.586
34 H 0.065 0.935
35 H 0.054 0.946
36 H 0.085 0.915
37 H 0.104 0.896
38 H 0.382 0.618
39 H 0.085 0.915
40 H 0.080 0.920
41 H 0.062 0.938
42 H 0.104 0.896
43 H 0.062 0.938
44 H 0.109 0.891
45 H 0.091 0.909
46 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.041 13.432 10.170 30.181
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.448 5.448
2 C -0.197 4.197
3 Si 1.006 2.994
4 H -0.197 1.197
5 H -0.222 1.222
6 H -0.254 1.254
7 C -0.545 4.545
8 H 0.087 0.913
9 C 0.134 3.866
10 C -0.319 4.319
11 C -0.054 4.054
12 C -0.333 4.333
13 C 0.159 3.841
14 N -0.311 5.311
15 C 0.407 3.593
16 O -0.477 6.477
17 N -0.380 5.380
18 C 0.019 3.981
19 C -0.148 4.148
20 C 0.096 3.904
21 O -0.377 6.377
22 C -0.224 4.224
23 C -0.023 4.023
24 O -0.320 6.320
25 C -0.025 4.025
26 C -0.213 4.213
27 N -0.334 5.334
28 H 0.093 0.907
29 H 0.132 0.868
30 H 0.160 0.840
31 H 0.165 0.835
32 H 0.252 0.748
33 H 0.251 0.749
34 H 0.084 0.916
35 H 0.072 0.928
36 H 0.104 0.896
37 H 0.122 0.878
38 H 0.232 0.768
39 H 0.103 0.897
40 H 0.099 0.901
41 H 0.080 0.920
42 H 0.122 0.878
43 H 0.080 0.920
44 H 0.127 0.873
45 H 0.109 0.891
46 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 24.417 14.920 9.947 30.294
hybrid contribution -0.146 -2.367 -0.209 2.381
sum 24.271 12.552 9.737 29.008
Atomic orbital electron populations
1.70637 1.08479 1.32899 1.32796 1.28431 0.95497 1.07716 0.88006
0.81706 0.71325 0.68311 0.78036 1.19690 1.22220 1.25389 1.20637
0.94075 0.96747 1.43044 0.91309 1.18374 0.93008 0.87309 0.87941
1.21765 0.95570 0.99606 1.14915 1.21312 0.93791 0.97496 0.92794
1.21862 1.02302 0.92930 1.16201 1.18092 0.88979 0.85517 0.91547
1.42246 1.06382 1.19546 1.62965 1.15872 0.80869 0.82976 0.79611
1.90813 1.61757 1.45082 1.50083 1.44997 1.09073 1.24532 1.59364
1.21290 0.77287 0.98477 1.01029 1.21770 0.93940 0.96739 1.02320
1.21118 0.93403 0.93805 0.82035 1.86607 1.29154 1.95069 1.26911
1.22952 0.97160 0.99141 1.03131 1.22705 0.94456 0.88744 0.96349
1.87961 1.75067 1.16467 1.52474 1.22768 0.92003 0.87538 1.00219
1.22814 0.97677 0.99089 1.01736 1.66122 1.11249 1.30173 1.25834
0.90740 0.86780 0.84043 0.83516 0.74759 0.74927 0.91627 0.92796
0.89628 0.87775 0.76781 0.89655 0.90120 0.91990 0.87836 0.91961
0.87309 0.89052 0.89488
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -45.78 13.65 21.84 0.30 -45.48 16
2 C 0.02 1.16 5.51 85.29 0.47 1.63 16
3 Si 1.18 56.21 25.93 68.60 1.78 57.99 16
4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16
5 H -0.29 -14.62 6.55 99.48 0.65 -13.97 16
6 H -0.32 -14.89 7.11 99.48 0.71 -14.19 16
7 C -0.51 -28.89 9.51 23.47 0.22 -28.66 16
8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16
9 C 0.26 13.90 6.27 40.20 0.25 14.15 16
10 C -0.30 -14.31 9.83 22.87 0.22 -14.09 16
11 C -0.03 -1.29 10.15 22.40 0.23 -1.06 16
12 C -0.31 -13.84 8.83 22.72 0.20 -13.64 16
13 C 0.39 17.91 7.51 133.24 1.00 18.91 16
14 N -0.66 -23.96 5.42 -322.13 -1.75 -25.71 16
15 C 0.71 23.42 8.40 179.05 1.50 24.93 16
16 O -0.60 -24.21 13.14 -3.96 -0.05 -24.26 16
17 N -0.72 -15.85 5.56 -478.56 -2.66 -18.51 16
18 C 0.14 2.76 5.09 86.38 0.44 3.20 16
19 C -0.11 -1.31 4.63 30.60 0.14 -1.17 16
20 C 0.14 1.54 0.80 -10.68 -0.01 1.53 16
21 O -0.57 -7.84 12.50 -148.98 -1.86 -9.70 16
22 C -0.19 -2.13 4.55 30.69 0.14 -1.99 16
23 C 0.05 0.56 6.59 72.02 0.47 1.03 16
24 O -0.40 -5.20 10.77 -148.98 -1.60 -6.80 16
25 C 0.05 0.42 6.59 72.01 0.47 0.89 16
26 C -0.18 -1.43 5.15 30.68 0.16 -1.27 16
27 N -0.61 -30.93 5.07 -186.37 -0.95 -31.87 16
28 H 0.28 15.17 8.73 -92.71 -0.81 14.36 16
29 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16
30 H 0.14 5.01 8.06 -2.91 -0.02 4.98 16
31 H 0.15 6.47 5.33 -3.19 -0.02 6.45 16
32 H 0.42 12.65 8.84 -92.71 -0.82 11.83 16
33 H 0.41 6.22 8.49 -92.70 -0.79 5.43 16
34 H 0.07 1.34 6.43 -2.39 -0.02 1.32 16
35 H 0.05 1.32 7.83 -2.39 -0.02 1.30 16
36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16
37 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16
38 H 0.38 3.17 5.97 -74.06 -0.44 2.72 16
39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16
40 H 0.08 1.10 6.56 -2.39 -0.02 1.09 16
41 H 0.06 0.50 6.93 -2.39 -0.02 0.48 16
42 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16
43 H 0.06 0.37 6.93 -2.38 -0.02 0.35 16
44 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16
45 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16
46 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16
Total: -1.00 -72.42 365.42 -1.97 -74.39
By element:
Atomic # 1 Polarization: 26.67 SS G_CDS: -1.10 Total: 25.57 kcal
Atomic # 6 Polarization: -1.53 SS G_CDS: 5.92 Total: 4.40 kcal
Atomic # 7 Polarization: -116.52 SS G_CDS: -5.05 Total: -121.58 kcal
Atomic # 8 Polarization: -37.25 SS G_CDS: -3.52 Total: -40.77 kcal
Atomic # 14 Polarization: 56.21 SS G_CDS: 1.78 Total: 57.99 kcal
Total: -72.42 -1.97 -74.39 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001426189801.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.222 kcal
(2) G-P(sol) polarization free energy of solvation -72.421 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.643 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.969 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.390 kcal
(6) G-S(sol) free energy of system = (1) + (5) -126.612 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds