Wall clock time and date at job start Tue Mar 31 2020 18:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86795 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47314 * 240.00592 * 3 2 1 5 5 H 1.48498 * 109.47416 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47289 * 120.00453 * 3 2 1 7 7 C 1.40033 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99422 * 179.97438 * 7 2 1 9 9 C 1.41327 * 120.00359 * 359.97438 * 7 2 1 10 10 C 1.40607 * 119.78802 * 179.97438 * 9 7 2 11 11 C 1.38311 * 119.12877 * 179.97438 * 10 9 7 12 12 C 1.38692 * 118.67310 * 0.02562 * 11 10 9 13 13 C 1.39644 * 119.49439 * 359.97438 * 12 11 10 14 14 N 1.39250 * 119.57795 * 179.97438 * 13 12 11 15 15 C 1.34770 * 120.00107 * 174.43578 * 14 13 12 16 16 O 1.21567 * 120.00453 * 5.03657 * 15 14 13 17 17 N 1.34778 * 119.99915 * 185.03412 * 15 14 13 18 18 C 1.46497 * 120.00076 * 180.02562 * 17 15 14 19 19 H 1.08999 * 109.46910 * 324.99866 * 18 17 15 20 20 C 1.53002 * 109.46994 * 85.00084 * 18 17 15 21 21 O 1.42895 * 109.47212 * 64.47782 * 20 18 17 22 22 C 1.53000 * 109.47127 * 204.99648 * 18 17 15 23 23 C 1.53180 * 109.54614 * 175.52371 * 22 18 17 24 24 C 1.53093 * 109.16647 * 183.15534 * 23 22 18 25 25 O 1.42907 * 109.41294 * 57.60756 * 24 23 22 26 26 C 1.42897 * 114.09730 * 298.84529 * 25 24 23 27 27 C 1.53093 * 109.41889 * 61.15962 * 26 25 24 28 28 N 1.31927 * 120.85032 * 0.25894 * 13 12 11 29 29 H 0.97005 * 120.00131 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.43540 * 0.02562 * 10 9 7 31 31 H 1.08005 * 120.66383 * 179.97438 * 11 10 9 32 32 H 1.07994 * 120.25157 * 180.02562 * 12 11 10 33 33 H 0.97004 * 119.99631 * 354.44256 * 14 13 12 34 34 H 0.97003 * 120.00117 * 359.97438 * 17 15 14 35 35 H 1.09004 * 109.46870 * 184.48033 * 20 18 17 36 36 H 1.08993 * 109.47308 * 304.47888 * 20 18 17 37 37 H 0.96704 * 114.00091 * 179.97438 * 21 20 18 38 38 H 1.08994 * 109.62013 * 295.74653 * 22 18 17 39 39 H 1.08996 * 109.52049 * 63.24627 * 23 22 18 40 40 H 1.09002 * 109.51974 * 303.06279 * 23 22 18 41 41 H 1.08993 * 109.47913 * 177.58791 * 24 23 22 42 42 H 1.08998 * 109.48061 * 297.63050 * 24 23 22 43 43 H 1.09010 * 109.48059 * 181.14093 * 26 25 24 44 44 H 1.09002 * 109.47985 * 301.17010 * 26 25 24 45 45 H 1.09000 * 109.52311 * 62.29900 * 27 26 25 46 46 H 1.08998 * 109.52191 * 182.41933 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0950 1.6964 -1.2126 5 1 1.2765 2.7465 0.0006 6 1 3.0952 1.6963 1.2124 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3009 -2.4367 -0.0005 10 6 2.0084 -3.6518 -0.0016 11 6 1.3031 -4.8415 -0.0011 12 6 -0.0830 -4.7935 0.0000 13 6 -0.7280 -3.5549 0.0010 14 7 -2.1196 -3.5046 0.0016 15 6 -2.7510 -2.3195 0.1157 16 8 -2.1091 -1.2872 0.1261 17 7 -4.0942 -2.2788 0.2184 18 6 -4.7807 -0.9905 0.3419 19 1 -4.1661 -0.3059 0.9264 20 6 -5.0160 -0.4024 -1.0508 21 8 -5.9063 -1.2486 -1.7810 22 6 -6.1252 -1.1942 1.0432 23 6 -6.7942 0.1644 1.2734 24 6 -8.1002 -0.0427 2.0449 25 8 -7.8226 -0.7082 3.2787 26 6 -7.2398 -2.0038 3.1245 27 6 -5.8992 -1.8755 2.3964 28 7 -0.0359 -2.4318 -0.0041 29 1 -0.4850 0.8401 0.0004 30 1 3.0884 -3.6560 -0.0021 31 1 1.8214 -5.7891 -0.0023 32 1 -0.6590 -5.7069 0.0009 33 1 -2.6344 -4.3227 -0.0801 34 1 -4.6066 -3.1024 0.2098 35 1 -5.4544 0.5911 -0.9563 36 1 -4.0660 -0.3314 -1.5804 37 1 -6.1011 -0.9361 -2.6752 38 1 -6.7700 -1.8179 0.4242 39 1 -7.0089 0.6321 0.3126 40 1 -6.1278 0.8054 1.8507 41 1 -8.5591 0.9246 2.2489 42 1 -8.7816 -0.6503 1.4495 43 1 -7.0790 -2.4492 4.1064 44 1 -7.9100 -2.6371 2.5433 45 1 -5.2147 -1.2758 2.9964 46 1 -5.4734 -2.8665 2.2398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467205194.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:50 Heat of formation + Delta-G solvation = -68.709268 kcal Electronic energy + Delta-G solvation = -29917.430405 eV Core-core repulsion = 25807.997214 eV Total energy + Delta-G solvation = -4109.433192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.09817 -39.16544 -37.88543 -36.88747 -35.01104 -33.98485 -32.95375 -32.58412 -31.25518 -30.25404 -29.34096 -28.13657 -25.48522 -25.10546 -23.63091 -22.46042 -21.40864 -20.90116 -20.17432 -19.64440 -18.03864 -17.34018 -17.16179 -16.35380 -16.12780 -16.05721 -15.37032 -14.97738 -14.80082 -14.61379 -14.42655 -14.31373 -13.96317 -13.68954 -13.59899 -13.09094 -12.86733 -12.66843 -12.50142 -12.36607 -12.04684 -11.87931 -11.65084 -11.45900 -11.11882 -10.94603 -10.91195 -10.67421 -10.62577 -10.42916 -10.37652 -9.95901 -9.91555 -9.66597 -9.62104 -9.06640 -8.98783 -8.40750 -7.91538 -7.17301 -6.90060 -6.07828 -4.35827 2.88195 3.16420 3.17569 3.20019 3.26391 3.30497 3.72862 4.09078 4.19059 4.40149 4.50058 4.61243 4.70703 4.82519 4.89550 4.98583 5.06760 5.20268 5.31590 5.40617 5.42771 5.51138 5.52456 5.63299 5.76114 5.84959 5.89513 6.02265 6.05841 6.09628 6.14339 6.33644 6.51776 6.65967 6.84150 6.88525 7.03115 7.04991 7.27178 7.41719 7.61704 7.65982 7.79296 7.85304 8.21038 8.33649 8.71370 8.84210 9.09834 9.64607 10.30992 10.52871 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012450 B = 0.003507 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.371952 B = 7981.588200 C = 9059.603915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.649 5.649 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.426 4.426 8 H 0.081 0.919 9 C 0.272 3.728 10 C -0.307 4.307 11 C -0.036 4.036 12 C -0.359 4.359 13 C 0.388 3.612 14 N -0.673 5.673 15 C 0.665 3.335 16 O -0.466 6.466 17 N -0.747 5.747 18 C 0.183 3.817 19 H 0.099 0.901 20 C 0.061 3.939 21 O -0.570 6.570 22 C -0.090 4.090 23 C -0.149 4.149 24 C 0.063 3.937 25 O -0.386 6.386 26 C 0.062 3.938 27 C -0.149 4.149 28 N -0.471 5.471 29 H 0.271 0.729 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.394 0.606 34 H 0.385 0.615 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.373 0.627 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.092 0.908 44 H 0.048 0.952 45 H 0.073 0.927 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.956 -0.702 0.548 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.267 5.267 2 C -0.172 4.172 3 Si 0.718 3.282 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.457 4.457 8 H 0.099 0.901 9 C 0.146 3.854 10 C -0.330 4.330 11 C -0.060 4.060 12 C -0.385 4.385 13 C 0.148 3.852 14 N -0.321 5.321 15 C 0.363 3.637 16 O -0.330 6.330 17 N -0.406 5.406 18 C 0.076 3.924 19 H 0.117 0.883 20 C -0.018 4.018 21 O -0.375 6.375 22 C -0.109 4.109 23 C -0.187 4.187 24 C -0.013 4.013 25 O -0.304 6.304 26 C -0.015 4.015 27 C -0.187 4.187 28 N -0.190 5.190 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.227 0.773 34 H 0.217 0.783 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.219 0.781 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.973 1.060 1.318 17.058 hybrid contribution 0.436 -0.806 -0.952 1.322 sum -16.537 0.254 0.366 16.543 Atomic orbital electron populations 1.70352 1.05545 1.27229 1.23573 1.26177 0.95133 1.00435 0.95448 0.86624 0.80233 0.81704 0.79629 1.19238 1.20479 1.19213 1.19530 0.93980 0.89413 1.42766 0.90093 1.18386 0.87200 0.91906 0.87861 1.21620 0.98512 0.93568 1.19345 1.20543 0.93137 0.96501 0.95856 1.20441 0.94747 0.94836 1.28445 1.18340 0.82483 0.90856 0.93533 1.42561 1.05191 1.07979 1.76413 1.16451 0.81388 0.85467 0.80402 1.91375 1.62413 1.29838 1.49398 1.45210 1.05436 1.08169 1.81758 1.20693 0.92037 0.86146 0.93511 0.88342 1.22743 0.93130 0.92257 0.93694 1.86425 1.67761 1.52813 1.30486 1.21348 0.96424 0.97187 0.95974 1.22229 0.97914 0.97395 1.01151 1.22544 0.95675 0.97394 0.85731 1.87924 1.81839 1.31027 1.29640 1.22592 0.93305 0.84581 1.01013 1.22220 0.98040 1.02078 0.96389 1.68700 1.06798 1.23117 1.20335 0.91737 0.88641 0.88677 0.89216 0.77300 0.78250 0.93431 0.92449 0.78083 0.89775 0.90595 0.90755 0.89032 0.93293 0.89011 0.93358 0.90794 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.03 8.99 55.55 0.50 -17.53 16 2 C 0.06 1.52 5.50 -17.34 -0.10 1.43 16 3 Si 0.89 19.38 29.56 -169.99 -5.02 14.36 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.43 -11.86 9.14 -37.74 -0.34 -12.20 16 8 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 9 C 0.27 7.73 6.55 -85.00 -0.56 7.17 16 10 C -0.31 -7.85 9.83 -38.66 -0.38 -8.23 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.36 -8.18 9.96 -38.89 -0.39 -8.56 16 13 C 0.39 9.59 7.42 -154.99 -1.15 8.44 16 14 N -0.67 -13.51 5.39 -15.79 -0.09 -13.59 16 15 C 0.66 13.53 8.49 -86.92 -0.74 12.79 16 16 O -0.47 -11.67 11.77 5.31 0.06 -11.61 16 17 N -0.75 -11.11 4.33 -58.68 -0.25 -11.36 16 18 C 0.18 2.47 1.95 -67.93 -0.13 2.33 16 19 H 0.10 1.59 7.58 -51.93 -0.39 1.19 16 20 C 0.06 0.78 6.48 37.16 0.24 1.02 16 21 O -0.57 -6.43 12.67 -35.23 -0.45 -6.88 16 22 C -0.09 -0.96 1.77 -90.43 -0.16 -1.12 16 23 C -0.15 -1.42 5.08 -26.59 -0.14 -1.56 16 24 C 0.06 0.57 6.84 37.21 0.25 0.83 16 25 O -0.39 -4.36 10.77 -35.23 -0.38 -4.74 16 26 C 0.06 0.60 6.84 37.21 0.25 0.85 16 27 C -0.15 -1.60 5.16 -26.59 -0.14 -1.74 16 28 N -0.47 -13.36 5.74 -10.26 -0.06 -13.42 16 29 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 30 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 31 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 32 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.39 6.19 8.71 -40.82 -0.36 5.83 16 34 H 0.38 4.77 8.18 -40.82 -0.33 4.44 16 35 H 0.05 0.51 6.86 -51.93 -0.36 0.16 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.37 2.81 9.12 45.56 0.42 3.23 16 38 H 0.08 0.90 7.44 -51.93 -0.39 0.52 16 39 H 0.08 0.65 6.83 -51.93 -0.35 0.30 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.08 0.79 7.32 -51.93 -0.38 0.41 16 LS Contribution 371.01 15.07 5.59 5.59 Total: -1.00 -34.18 371.01 -9.88 -44.06 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -5.92 Total: 14.91 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -3.87 Total: 0.21 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.10 Total: -55.90 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.76 Total: -23.23 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.18 -9.88 -44.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467205194.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.650 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds