Wall clock time and date at job start Tue Mar 31 2020 18:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86795 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47314 * 240.00592 * 3 2 1 5 5 H 1.48498 * 109.47416 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47289 * 120.00453 * 3 2 1 7 7 C 1.40033 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99422 * 179.97438 * 7 2 1 9 9 C 1.41327 * 120.00359 * 359.97438 * 7 2 1 10 10 C 1.40607 * 119.78802 * 179.97438 * 9 7 2 11 11 C 1.38311 * 119.12877 * 179.97438 * 10 9 7 12 12 C 1.38692 * 118.67310 * 0.02562 * 11 10 9 13 13 C 1.39644 * 119.49439 * 359.97438 * 12 11 10 14 14 N 1.39250 * 119.57795 * 179.97438 * 13 12 11 15 15 C 1.34770 * 120.00107 * 174.43578 * 14 13 12 16 16 O 1.21567 * 120.00453 * 5.03657 * 15 14 13 17 17 N 1.34778 * 119.99915 * 185.03412 * 15 14 13 18 18 C 1.46497 * 120.00076 * 180.02562 * 17 15 14 19 19 H 1.08999 * 109.46910 * 324.99866 * 18 17 15 20 20 C 1.53002 * 109.46994 * 85.00084 * 18 17 15 21 21 O 1.42895 * 109.47212 * 64.47782 * 20 18 17 22 22 C 1.53000 * 109.47127 * 204.99648 * 18 17 15 23 23 C 1.53180 * 109.54614 * 175.52371 * 22 18 17 24 24 C 1.53093 * 109.16647 * 183.15534 * 23 22 18 25 25 O 1.42907 * 109.41294 * 57.60756 * 24 23 22 26 26 C 1.42897 * 114.09730 * 298.84529 * 25 24 23 27 27 C 1.53093 * 109.41889 * 61.15962 * 26 25 24 28 28 N 1.31927 * 120.85032 * 0.25894 * 13 12 11 29 29 H 0.97005 * 120.00131 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.43540 * 0.02562 * 10 9 7 31 31 H 1.08005 * 120.66383 * 179.97438 * 11 10 9 32 32 H 1.07994 * 120.25157 * 180.02562 * 12 11 10 33 33 H 0.97004 * 119.99631 * 354.44256 * 14 13 12 34 34 H 0.97003 * 120.00117 * 359.97438 * 17 15 14 35 35 H 1.09004 * 109.46870 * 184.48033 * 20 18 17 36 36 H 1.08993 * 109.47308 * 304.47888 * 20 18 17 37 37 H 0.96704 * 114.00091 * 179.97438 * 21 20 18 38 38 H 1.08994 * 109.62013 * 295.74653 * 22 18 17 39 39 H 1.08996 * 109.52049 * 63.24627 * 23 22 18 40 40 H 1.09002 * 109.51974 * 303.06279 * 23 22 18 41 41 H 1.08993 * 109.47913 * 177.58791 * 24 23 22 42 42 H 1.08998 * 109.48061 * 297.63050 * 24 23 22 43 43 H 1.09010 * 109.48059 * 181.14093 * 26 25 24 44 44 H 1.09002 * 109.47985 * 301.17010 * 26 25 24 45 45 H 1.09000 * 109.52311 * 62.29900 * 27 26 25 46 46 H 1.08998 * 109.52191 * 182.41933 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0950 1.6964 -1.2126 5 1 1.2765 2.7465 0.0006 6 1 3.0952 1.6963 1.2124 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3009 -2.4367 -0.0005 10 6 2.0084 -3.6518 -0.0016 11 6 1.3031 -4.8415 -0.0011 12 6 -0.0830 -4.7935 0.0000 13 6 -0.7280 -3.5549 0.0010 14 7 -2.1196 -3.5046 0.0016 15 6 -2.7510 -2.3195 0.1157 16 8 -2.1091 -1.2872 0.1261 17 7 -4.0942 -2.2788 0.2184 18 6 -4.7807 -0.9905 0.3419 19 1 -4.1661 -0.3059 0.9264 20 6 -5.0160 -0.4024 -1.0508 21 8 -5.9063 -1.2486 -1.7810 22 6 -6.1252 -1.1942 1.0432 23 6 -6.7942 0.1644 1.2734 24 6 -8.1002 -0.0427 2.0449 25 8 -7.8226 -0.7082 3.2787 26 6 -7.2398 -2.0038 3.1245 27 6 -5.8992 -1.8755 2.3964 28 7 -0.0359 -2.4318 -0.0041 29 1 -0.4850 0.8401 0.0004 30 1 3.0884 -3.6560 -0.0021 31 1 1.8214 -5.7891 -0.0023 32 1 -0.6590 -5.7069 0.0009 33 1 -2.6344 -4.3227 -0.0801 34 1 -4.6066 -3.1024 0.2098 35 1 -5.4544 0.5911 -0.9563 36 1 -4.0660 -0.3314 -1.5804 37 1 -6.1011 -0.9361 -2.6752 38 1 -6.7700 -1.8179 0.4242 39 1 -7.0089 0.6321 0.3126 40 1 -6.1278 0.8054 1.8507 41 1 -8.5591 0.9246 2.2489 42 1 -8.7816 -0.6503 1.4495 43 1 -7.0790 -2.4492 4.1064 44 1 -7.9100 -2.6371 2.5433 45 1 -5.2147 -1.2758 2.9964 46 1 -5.4734 -2.8665 2.2398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467205194.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:49 Heat of formation + Delta-G solvation = -94.252859 kcal Electronic energy + Delta-G solvation = -29918.538059 eV Core-core repulsion = 25807.997214 eV Total energy + Delta-G solvation = -4110.540845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36681 -40.46735 -39.45592 -38.08164 -36.13211 -35.73505 -34.80675 -33.80182 -32.18206 -32.04061 -30.98865 -29.47845 -27.40212 -26.02810 -24.53384 -23.97260 -23.16909 -22.27512 -21.31461 -21.03048 -19.76044 -18.80667 -18.28680 -17.96088 -17.22125 -16.91450 -16.61042 -16.39390 -16.25414 -16.00973 -15.66069 -15.57542 -15.50121 -15.20743 -14.67964 -14.63998 -14.44059 -14.07783 -13.77335 -13.51985 -13.40365 -13.18709 -12.87809 -12.72257 -12.67326 -12.55644 -12.30358 -12.24536 -11.85856 -11.78091 -11.53768 -11.47246 -11.18584 -10.96798 -10.84262 -10.76570 -10.47163 -9.88724 -9.76654 -9.08845 -8.76267 -8.00667 -6.39692 0.98795 1.29969 1.39246 1.50448 1.54129 1.81893 2.27296 2.59120 3.00398 3.05396 3.33199 3.43766 3.57068 3.81808 3.89208 4.08408 4.09415 4.27598 4.35065 4.36742 4.38817 4.45908 4.55026 4.62325 4.72928 4.76018 4.81837 4.84001 4.87054 4.93570 4.97722 4.99024 5.08040 5.16456 5.18823 5.29263 5.43347 5.68453 5.76466 5.87634 5.94132 6.06029 6.30087 6.33402 6.44248 6.83607 6.85558 7.09217 7.28835 8.05229 8.40105 8.59852 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012450 B = 0.003507 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.371952 B = 7981.588200 C = 9059.603915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.683 5.683 2 C 0.011 3.989 3 Si 0.971 3.029 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.468 4.468 8 H 0.084 0.916 9 C 0.237 3.763 10 C -0.332 4.332 11 C -0.034 4.034 12 C -0.347 4.347 13 C 0.366 3.634 14 N -0.663 5.663 15 C 0.659 3.341 16 O -0.515 6.515 17 N -0.724 5.724 18 C 0.180 3.820 19 H 0.066 0.934 20 C 0.073 3.927 21 O -0.571 6.571 22 C -0.076 4.076 23 C -0.147 4.147 24 C 0.062 3.938 25 O -0.407 6.407 26 C 0.063 3.937 27 C -0.148 4.148 28 N -0.506 5.506 29 H 0.268 0.732 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.415 0.585 34 H 0.402 0.598 35 H 0.071 0.929 36 H 0.017 0.983 37 H 0.392 0.608 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.098 0.902 44 H 0.067 0.933 45 H 0.047 0.953 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.839 -1.838 0.257 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.302 5.302 2 C -0.215 4.215 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.499 4.499 8 H 0.103 0.897 9 C 0.112 3.888 10 C -0.355 4.355 11 C -0.058 4.058 12 C -0.373 4.373 13 C 0.126 3.874 14 N -0.313 5.313 15 C 0.357 3.643 16 O -0.383 6.383 17 N -0.383 5.383 18 C 0.074 3.926 19 H 0.084 0.916 20 C -0.006 4.006 21 O -0.378 6.378 22 C -0.095 4.095 23 C -0.185 4.185 24 C -0.014 4.014 25 O -0.326 6.326 26 C -0.013 4.013 27 C -0.186 4.186 28 N -0.225 5.225 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.252 0.748 34 H 0.237 0.763 35 H 0.089 0.911 36 H 0.036 0.964 37 H 0.241 0.759 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.123 0.877 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.931 -0.137 1.011 18.958 hybrid contribution 0.921 -0.637 -0.883 1.426 sum -18.010 -0.774 0.129 18.027 Atomic orbital electron populations 1.70558 1.07059 1.27780 1.24760 1.27014 0.96024 1.03821 0.94599 0.85439 0.78716 0.76756 0.79831 1.18467 1.19862 1.18599 1.19863 0.94389 0.90529 1.45079 0.89739 1.18876 0.87978 0.93350 0.88614 1.21804 0.99174 0.93878 1.20629 1.21021 0.93500 0.97323 0.93974 1.20912 0.95141 0.95578 1.25648 1.18837 0.84193 0.91052 0.93313 1.42413 1.03881 1.09064 1.75933 1.16711 0.82739 0.84859 0.79994 1.91368 1.63961 1.31489 1.51452 1.44938 1.03580 1.09617 1.80192 1.20775 0.92817 0.84769 0.94213 0.91605 1.22456 0.91907 0.93581 0.92689 1.86367 1.66863 1.52748 1.31868 1.21247 0.94504 0.98184 0.95565 1.22227 0.98008 0.96389 1.01849 1.22687 0.95321 0.98325 0.85110 1.87903 1.81912 1.31752 1.31032 1.22651 0.92633 0.84455 1.01587 1.22196 0.98495 1.01668 0.96221 1.68662 1.07143 1.25287 1.21392 0.92103 0.87830 0.84527 0.85160 0.74769 0.76320 0.91107 0.96422 0.75892 0.88628 0.89153 0.92266 0.87650 0.91708 0.88348 0.91493 0.93368 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -39.96 8.99 21.84 0.20 -39.76 16 2 C 0.01 0.62 5.50 85.29 0.47 1.09 16 3 Si 0.97 41.34 29.56 68.60 2.03 43.37 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 7 C -0.47 -27.17 9.14 23.47 0.21 -26.96 16 8 H 0.08 4.59 7.85 -2.91 -0.02 4.57 16 9 C 0.24 14.01 6.55 40.20 0.26 14.27 16 10 C -0.33 -17.12 9.83 22.87 0.22 -16.89 16 11 C -0.03 -1.51 10.15 22.40 0.23 -1.28 16 12 C -0.35 -15.12 9.96 22.72 0.23 -14.89 16 13 C 0.37 18.13 7.42 133.24 0.99 19.12 16 14 N -0.66 -26.36 5.39 -322.15 -1.74 -28.09 16 15 C 0.66 27.41 8.49 179.06 1.52 28.93 16 16 O -0.51 -27.14 11.77 -3.93 -0.05 -27.19 16 17 N -0.72 -21.42 4.33 -457.84 -1.98 -23.40 16 18 C 0.18 4.90 1.95 44.99 0.09 4.99 16 19 H 0.07 2.26 7.58 -2.39 -0.02 2.24 16 20 C 0.07 1.84 6.48 71.98 0.47 2.31 16 21 O -0.57 -11.72 12.67 -148.98 -1.89 -13.61 16 22 C -0.08 -1.52 1.77 -10.67 -0.02 -1.54 16 23 C -0.15 -2.59 5.08 30.69 0.16 -2.44 16 24 C 0.06 0.98 6.84 72.01 0.49 1.47 16 25 O -0.41 -8.52 10.77 -148.98 -1.60 -10.12 16 26 C 0.06 1.11 6.84 72.01 0.49 1.60 16 27 C -0.15 -3.05 5.16 30.69 0.16 -2.90 16 28 N -0.51 -29.66 5.74 -186.37 -1.07 -30.73 16 29 H 0.27 14.85 8.29 -92.70 -0.77 14.08 16 30 H 0.10 4.98 8.06 -2.91 -0.02 4.96 16 31 H 0.14 4.84 8.06 -2.91 -0.02 4.82 16 32 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 33 H 0.42 12.28 8.71 -92.71 -0.81 11.47 16 34 H 0.40 9.31 8.18 -92.71 -0.76 8.55 16 35 H 0.07 1.46 6.86 -2.39 -0.02 1.44 16 36 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.39 5.00 9.12 -74.05 -0.68 4.32 16 38 H 0.10 1.76 7.44 -2.39 -0.02 1.75 16 39 H 0.09 1.34 6.83 -2.39 -0.02 1.32 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.08 1.54 7.32 -2.39 -0.02 1.52 16 Total: -1.00 -78.60 371.01 -1.34 -79.93 By element: Atomic # 1 Polarization: 43.93 SS G_CDS: -1.20 Total: 42.72 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 5.97 Total: 6.88 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -4.59 Total: -121.99 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -3.54 Total: -50.92 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -78.60 -1.34 -79.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467205194.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.319 kcal (2) G-P(sol) polarization free energy of solvation -78.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds