Wall clock time and date at job start Tue Mar 31 2020 18:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48503 * 109.46878 * 269.99794 * 3 2 1 5 5 H 1.48496 * 109.47096 * 30.00034 * 3 2 1 6 6 H 1.48499 * 109.47018 * 150.00235 * 3 2 1 7 7 C 1.37874 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99551 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00158 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47299 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47239 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99951 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99883 * 359.97438 * 12 11 10 14 14 N 1.34768 * 119.99888 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00123 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47506 * 180.02562 * 15 14 12 17 17 N 1.46493 * 109.47558 * 180.02562 * 16 15 14 18 18 C 1.34772 * 120.00563 * 180.02562 * 17 16 15 19 19 O 1.21516 * 119.99634 * 359.97438 * 18 17 16 20 20 O 1.34639 * 120.00599 * 180.02562 * 18 17 16 21 21 C 1.45190 * 117.00170 * 179.97438 * 20 18 17 22 22 C 1.50707 * 109.47131 * 179.97438 * 21 20 18 23 23 C 1.38238 * 119.99792 * 90.00017 * 22 21 20 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00220 * 359.97124 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00179 * 269.97954 * 22 21 20 28 28 H 0.96999 * 119.99834 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47411 * 60.00268 * 9 7 2 30 30 H 1.08996 * 109.47303 * 299.99748 * 9 7 2 31 31 H 1.08998 * 109.46742 * 59.99770 * 10 9 7 32 32 H 1.09004 * 109.47105 * 300.00503 * 10 9 7 33 33 H 0.96991 * 119.99983 * 359.97438 * 11 10 9 34 34 H 0.96999 * 120.00393 * 0.02562 * 14 12 11 35 35 H 1.09003 * 109.46905 * 60.00319 * 15 14 12 36 36 H 1.09000 * 109.47351 * 300.00873 * 15 14 12 37 37 H 1.09003 * 109.46952 * 60.00134 * 16 15 14 38 38 H 1.09000 * 109.47354 * 300.00658 * 16 15 14 39 39 H 0.97006 * 119.99893 * 359.97438 * 17 16 15 40 40 H 1.09005 * 109.47695 * 59.99979 * 21 20 18 41 41 H 1.09000 * 109.47342 * 299.99215 * 21 20 18 42 42 H 1.08005 * 120.00068 * 359.97438 * 23 22 21 43 43 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 46 46 H 1.07999 * 119.99968 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6366 0.0001 11 7 5.4865 -2.6366 0.0001 12 6 6.1604 -3.8038 -0.0003 13 8 5.5525 -4.8567 -0.0002 14 7 7.5081 -3.8038 -0.0008 15 6 8.2407 -5.0725 -0.0006 16 6 9.7449 -4.7930 -0.0006 17 7 10.4774 -6.0616 -0.0011 18 6 11.8251 -6.0617 -0.0007 19 8 12.4327 -5.0093 -0.0003 20 8 12.4984 -7.2276 -0.0016 21 6 13.9483 -7.1516 -0.0016 22 6 14.5244 -8.5442 -0.0022 23 6 14.7885 -9.1825 -1.1996 24 6 15.3174 -10.4596 -1.2001 25 6 15.5827 -11.0984 -0.0032 26 6 15.3136 -10.4622 1.1942 27 6 14.7890 -9.1832 1.1947 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6797 0.8894 30 1 3.8745 -0.6809 -0.8905 31 1 3.6578 -3.1505 -0.8896 32 1 3.6585 -3.1502 0.8903 33 1 5.9715 -1.7966 -0.0003 34 1 7.9932 -2.9637 -0.0004 35 1 7.9771 -5.6443 -0.8904 36 1 7.9776 -5.6439 0.8895 37 1 10.0082 -4.2213 0.8894 38 1 10.0083 -4.2214 -0.8906 39 1 9.9924 -6.9017 -0.0010 40 1 14.2844 -6.6202 0.8888 41 1 14.2842 -6.6189 -0.8913 42 1 14.5817 -8.6832 -2.1347 43 1 15.5234 -10.9584 -2.1356 44 1 15.9963 -12.0960 -0.0036 45 1 15.5167 -10.9629 2.1293 46 1 14.5833 -8.6843 2.1302 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471608833.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:12 Heat of formation + Delta-G solvation = -118.049047 kcal Electronic energy + Delta-G solvation = -26128.623875 eV Core-core repulsion = 22017.051150 eV Total energy + Delta-G solvation = -4111.572725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64723 -40.99694 -40.10996 -38.13206 -37.05203 -36.43825 -35.16838 -34.72791 -33.14690 -32.06976 -31.85159 -29.96175 -27.51799 -26.59425 -24.12571 -23.54419 -22.73816 -22.61105 -22.21622 -21.91685 -20.05107 -19.39174 -18.89023 -18.26275 -17.81098 -17.50413 -17.04175 -16.96299 -16.27479 -16.22146 -16.10256 -15.94903 -15.75256 -15.24723 -15.11653 -14.96025 -14.66563 -14.56051 -14.36621 -14.07273 -13.91611 -13.34186 -13.32372 -13.12993 -12.89016 -12.87441 -12.15282 -12.14262 -12.13334 -12.08278 -11.84388 -11.74151 -11.70435 -11.52564 -11.31612 -10.76743 -10.44067 -10.32631 -9.87507 -9.87158 -9.75022 -8.27939 -6.35064 0.10511 0.45093 1.07426 1.41103 1.43632 1.54767 1.64802 1.83596 2.16045 2.38852 2.78544 3.07553 3.19868 3.47187 3.57747 3.73689 3.79815 4.02261 4.08554 4.22305 4.24593 4.29374 4.37277 4.38810 4.48716 4.57840 4.69088 4.78613 4.79320 4.81931 4.99000 5.04973 5.10406 5.18520 5.29238 5.42463 5.44860 5.47355 5.50387 5.56031 5.57452 5.68733 6.01618 6.03017 6.24962 6.25795 6.72667 7.12797 7.18368 7.29609 7.59341 8.88947 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.039139 B = 0.001259 C = 0.001238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.225271 B =22228.422852 C =22617.951882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.236 1.236 7 C -0.539 4.539 8 H 0.029 0.971 9 C -0.012 4.012 10 C 0.164 3.836 11 N -0.730 5.730 12 C 0.700 3.300 13 O -0.638 6.638 14 N -0.729 5.729 15 C 0.134 3.866 16 C 0.137 3.863 17 N -0.694 5.694 18 C 0.650 3.350 19 O -0.602 6.602 20 O -0.366 6.366 21 C 0.129 3.871 22 C -0.115 4.115 23 C -0.106 4.106 24 C -0.131 4.131 25 C -0.113 4.113 26 C -0.131 4.131 27 C -0.106 4.106 28 H 0.267 0.733 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.411 0.589 34 H 0.415 0.585 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.421 0.579 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.466 -17.987 0.026 42.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.159 1.159 7 C -0.578 4.578 8 H 0.048 0.952 9 C -0.050 4.050 10 C 0.039 3.961 11 N -0.386 5.386 12 C 0.400 3.600 13 O -0.520 6.520 14 N -0.387 5.387 15 C 0.009 3.991 16 C 0.014 3.986 17 N -0.355 5.355 18 C 0.402 3.598 19 O -0.493 6.493 20 O -0.280 6.280 21 C 0.055 3.945 22 C -0.115 4.115 23 C -0.124 4.124 24 C -0.149 4.149 25 C -0.131 4.131 26 C -0.149 4.149 27 C -0.124 4.124 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.248 0.752 34 H 0.252 0.748 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.258 0.742 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.151 0.849 43 H 0.162 0.838 44 H 0.163 0.837 45 H 0.162 0.838 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 38.133 -18.357 0.029 42.321 hybrid contribution -0.296 1.041 -0.025 1.082 sum 37.837 -17.317 0.004 41.611 Atomic orbital electron populations 1.70078 1.08626 1.28390 1.52100 1.26062 0.95636 1.03815 0.93678 0.85546 0.79713 0.77366 0.79279 1.19067 1.21400 1.15860 1.21276 0.91673 0.93386 1.51439 0.95249 1.19647 0.94282 0.92963 0.98109 1.20880 0.77140 0.98181 0.99851 1.45098 1.07279 1.07371 1.78834 1.16051 0.82255 0.83981 0.77718 1.90898 1.69011 1.32144 1.59935 1.44579 1.03428 1.10354 1.80352 1.21147 0.88967 0.85636 1.03370 1.21321 0.88669 0.84293 1.04304 1.44300 1.02284 1.11447 1.77485 1.18123 0.83443 0.82116 0.76077 1.91004 1.68795 1.32413 1.57112 1.86315 1.23139 1.31877 1.86685 1.21834 0.73941 0.94797 1.03919 1.19578 1.02061 0.95267 0.94605 1.21337 0.97843 0.95525 0.97695 1.21484 0.99120 0.94784 0.99504 1.21619 0.98269 1.00853 0.92368 1.21484 0.99133 0.94773 0.99500 1.21336 0.97862 0.95501 0.97700 0.92374 0.94427 0.94582 0.93977 0.93985 0.75247 0.74767 0.90927 0.90942 0.89736 0.89737 0.74179 0.89948 0.89943 0.84943 0.83834 0.83680 0.83833 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 2 C 0.01 0.29 5.47 84.65 0.46 0.75 16 3 Si 0.96 41.92 27.47 68.60 1.88 43.80 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.24 -9.09 6.54 99.48 0.65 -8.44 16 7 C -0.54 -30.57 9.66 25.60 0.25 -30.33 16 8 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 9 C -0.01 -0.53 4.16 29.85 0.12 -0.41 16 10 C 0.16 6.59 5.61 86.38 0.48 7.07 16 11 N -0.73 -21.96 5.56 -478.53 -2.66 -24.62 16 12 C 0.70 21.25 8.57 179.06 1.53 22.79 16 13 O -0.64 -25.61 16.34 -3.99 -0.07 -25.68 16 14 N -0.73 -13.84 5.56 -478.54 -2.66 -16.50 16 15 C 0.13 2.10 5.79 86.38 0.50 2.60 16 16 C 0.14 1.71 5.79 86.38 0.50 2.21 16 17 N -0.69 -9.39 5.56 -590.87 -3.28 -12.67 16 18 C 0.65 12.20 8.75 129.79 1.14 13.34 16 19 O -0.60 -14.85 16.13 19.79 0.32 -14.53 16 20 O -0.37 -6.27 10.25 -55.49 -0.57 -6.84 16 21 C 0.13 1.86 5.60 71.24 0.40 2.25 16 22 C -0.11 -1.51 5.52 -19.86 -0.11 -1.61 16 23 C -0.11 -1.23 9.70 22.27 0.22 -1.01 16 24 C -0.13 -1.22 10.05 22.27 0.22 -0.99 16 25 C -0.11 -0.96 10.05 22.27 0.22 -0.73 16 26 C -0.13 -1.22 10.05 22.27 0.22 -0.99 16 27 C -0.11 -1.22 9.70 22.27 0.22 -1.01 16 28 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 30 H 0.04 1.46 7.57 -2.39 -0.02 1.44 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.41 9.29 8.49 -92.71 -0.79 8.51 16 34 H 0.42 5.09 8.49 -92.71 -0.79 4.30 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.42 4.10 8.58 -92.70 -0.80 3.31 16 40 H 0.08 1.13 8.08 -2.38 -0.02 1.11 16 41 H 0.08 1.13 8.08 -2.39 -0.02 1.12 16 42 H 0.13 1.21 8.06 -2.91 -0.02 1.19 16 43 H 0.14 0.72 8.06 -2.91 -0.02 0.70 16 44 H 0.15 0.54 8.06 -2.91 -0.02 0.52 16 45 H 0.14 0.72 8.06 -2.91 -0.02 0.70 16 46 H 0.13 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -80.77 397.97 -1.76 -82.54 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -1.41 Total: 19.49 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 6.38 Total: 13.93 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -8.31 Total: -112.71 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -0.31 Total: -47.05 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.88 Total: 43.80 kcal Total: -80.77 -1.76 -82.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471608833.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.513 kcal (2) G-P(sol) polarization free energy of solvation -80.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds