Wall clock time and date at job start Tue Mar 31 2020 18:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86801 * 120.00294 * 2 1 4 4 H 1.48498 * 109.46840 * 275.00115 * 3 2 1 5 5 H 1.48500 * 109.47127 * 34.99488 * 3 2 1 6 6 H 1.48498 * 109.47287 * 155.00002 * 3 2 1 7 7 C 1.40033 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99974 * 174.77793 * 7 2 1 9 9 C 1.41336 * 119.99792 * 354.77935 * 7 2 1 10 10 C 1.40608 * 119.78320 * 185.24700 * 9 7 2 11 11 C 1.38313 * 119.12457 * 180.02562 * 10 9 7 12 12 C 1.38684 * 118.67328 * 359.97438 * 11 10 9 13 13 C 1.39646 * 119.49751 * 0.02562 * 12 11 10 14 14 N 1.39245 * 119.57504 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99910 * 174.68342 * 14 13 12 16 16 O 1.21578 * 119.99758 * 4.95712 * 15 14 13 17 17 N 1.34773 * 119.99637 * 184.96021 * 15 14 13 18 18 C 1.46506 * 119.99558 * 179.97438 * 17 15 14 19 19 C 1.53005 * 109.47035 * 179.97438 * 18 17 15 20 20 H 1.09000 * 109.46889 * 304.99730 * 19 18 17 21 21 C 1.52998 * 109.47048 * 65.00001 * 19 18 17 22 22 O 1.42901 * 109.47140 * 184.99956 * 21 19 18 23 23 C 1.53002 * 109.46747 * 185.00305 * 19 18 17 24 24 H 1.08997 * 110.79979 * 300.69581 * 23 19 18 25 25 C 1.54814 * 110.90491 * 177.07427 * 23 19 18 26 26 C 1.54094 * 104.18731 * 220.92082 * 25 23 19 27 27 O 1.43748 * 107.29414 * 357.96876 * 26 25 23 28 28 C 1.44417 * 106.99901 * 26.48977 * 27 26 25 29 29 N 1.31925 * 120.84563 * 0.27840 * 13 12 11 30 30 H 0.97000 * 119.99687 * 359.97438 * 1 2 3 31 31 H 1.07994 * 120.43635 * 0.03820 * 10 9 7 32 32 H 1.08010 * 120.66234 * 180.02562 * 11 10 9 33 33 H 1.08004 * 120.25227 * 180.02562 * 12 11 10 34 34 H 0.97002 * 120.00429 * 354.40911 * 14 13 12 35 35 H 0.96991 * 120.00496 * 359.97438 * 17 15 14 36 36 H 1.08990 * 109.47353 * 300.00003 * 18 17 15 37 37 H 1.09001 * 109.47101 * 59.99949 * 18 17 15 38 38 H 1.08996 * 109.47059 * 304.99745 * 21 19 18 39 39 H 1.09002 * 109.46860 * 65.00089 * 21 19 18 40 40 H 0.96692 * 114.00306 * 180.02562 * 22 21 19 41 41 H 1.09004 * 110.48644 * 339.59476 * 25 23 19 42 42 H 1.08996 * 110.48984 * 102.10522 * 25 23 19 43 43 H 1.09000 * 109.88230 * 117.39448 * 26 25 23 44 44 H 1.09000 * 109.87954 * 238.39592 * 26 25 23 45 45 H 1.09002 * 110.65205 * 201.48639 * 28 27 26 46 46 H 1.08995 * 110.60109 * 78.47706 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3833 2.1073 -1.3948 5 1 1.4958 2.6199 0.8029 6 1 3.5879 1.4119 0.5917 7 6 2.0076 -1.2127 0.0005 8 1 3.0842 -1.2147 -0.0846 9 6 1.3052 -2.4341 0.1125 10 6 2.0172 -3.6415 0.2239 11 6 1.3161 -4.8289 0.3321 12 6 -0.0701 -4.7860 0.3274 13 6 -0.7195 -3.5549 0.2139 14 7 -2.1112 -3.5101 0.2085 15 6 -2.7471 -2.3217 0.2074 16 8 -2.1087 -1.2907 0.1203 17 7 -4.0907 -2.2764 0.3031 18 6 -4.7819 -0.9846 0.3026 19 6 -6.2902 -1.2131 0.4203 20 1 -6.6193 -1.8825 -0.3745 21 6 -6.6063 -1.8408 1.7793 22 8 -7.9974 -2.1613 1.8440 23 6 -7.0201 0.1256 0.2945 24 1 -6.6975 0.8170 1.0729 25 6 -8.5545 -0.0758 0.3358 26 6 -9.0913 0.8898 -0.7384 27 8 -7.9624 1.5941 -1.2824 28 6 -6.8102 0.7400 -1.1129 29 7 -0.0314 -2.4346 0.1057 30 1 -0.4850 0.8401 0.0004 31 1 3.0971 -3.6417 0.2251 32 1 1.8378 -5.7706 0.4194 33 1 -0.6429 -5.6977 0.4110 34 1 -2.6231 -4.3340 0.2014 35 1 -4.6000 -3.0989 0.3723 36 1 -4.4375 -0.3879 1.1471 37 1 -4.5661 -0.4574 -0.6268 38 1 -6.0179 -2.7496 1.9055 39 1 -6.3589 -1.1347 2.5720 40 1 -8.2700 -2.5634 2.6800 41 1 -8.8110 -1.1053 0.0858 42 1 -8.9475 0.1864 1.3181 43 1 -9.5916 0.3267 -1.5263 44 1 -9.7889 1.5954 -0.2873 45 1 -5.8906 1.3244 -1.1432 46 1 -6.7958 -0.0400 -1.8740 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001477035223.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:50 Heat of formation + Delta-G solvation = -92.267483 kcal Electronic energy + Delta-G solvation = -29187.129935 eV Core-core repulsion = 25076.675183 eV Total energy + Delta-G solvation = -4110.454752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.23502 -40.63130 -39.50113 -38.16228 -36.29579 -35.72990 -34.81015 -34.00601 -32.18752 -31.46290 -30.59841 -29.21757 -27.52168 -26.52036 -24.01677 -23.68197 -23.11263 -22.44953 -21.54352 -21.00746 -19.77663 -18.94285 -18.13528 -17.90856 -17.47477 -16.83274 -16.61087 -16.52615 -16.24317 -16.07375 -15.78427 -15.56142 -15.40269 -15.06035 -14.73455 -14.60634 -14.37522 -14.19272 -13.70246 -13.68407 -13.32724 -13.04429 -12.89679 -12.70152 -12.56846 -12.53771 -12.35343 -12.29216 -11.77164 -11.75956 -11.54222 -11.49550 -11.43067 -10.85029 -10.84510 -10.79890 -10.63122 -9.90606 -9.80946 -9.08931 -8.75886 -8.01179 -6.38649 0.98786 1.30425 1.40535 1.51605 1.55704 1.80969 2.28030 2.58828 2.98742 3.05719 3.23692 3.38811 3.48193 3.75850 3.89748 4.08892 4.15544 4.23611 4.31623 4.35681 4.39070 4.42669 4.56411 4.61894 4.73001 4.78857 4.81268 4.84566 4.86534 4.91495 4.93004 4.98994 5.09004 5.14590 5.25397 5.30064 5.35029 5.66221 5.70433 5.88066 5.93273 5.94774 6.05763 6.33644 6.44742 6.84298 6.95116 7.09805 7.27715 8.03843 8.40500 8.60250 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.003069 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.890674 B = 9120.998242 C =10887.801107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.684 5.684 2 C 0.011 3.989 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.467 4.467 8 H 0.084 0.916 9 C 0.237 3.763 10 C -0.331 4.331 11 C -0.034 4.034 12 C -0.345 4.345 13 C 0.365 3.635 14 N -0.661 5.661 15 C 0.656 3.344 16 O -0.515 6.515 17 N -0.735 5.735 18 C 0.153 3.847 19 C -0.072 4.072 20 H 0.093 0.907 21 C 0.086 3.914 22 O -0.575 6.575 23 C -0.106 4.106 24 H 0.082 0.918 25 C -0.122 4.122 26 C 0.035 3.965 27 O -0.406 6.406 28 C 0.044 3.956 29 N -0.507 5.507 30 H 0.269 0.731 31 H 0.103 0.897 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.417 0.583 35 H 0.404 0.596 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.394 0.606 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.754 -4.103 3.438 20.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.303 5.303 2 C -0.214 4.214 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.498 4.498 8 H 0.102 0.898 9 C 0.111 3.889 10 C -0.354 4.354 11 C -0.058 4.058 12 C -0.371 4.371 13 C 0.125 3.875 14 N -0.312 5.312 15 C 0.354 3.646 16 O -0.383 6.383 17 N -0.397 5.397 18 C 0.029 3.971 19 C -0.091 4.091 20 H 0.111 0.889 21 C 0.008 3.992 22 O -0.383 6.383 23 C -0.125 4.125 24 H 0.100 0.900 25 C -0.159 4.159 26 C -0.042 4.042 27 O -0.326 6.326 28 C -0.032 4.032 29 N -0.227 5.227 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.254 0.746 35 H 0.240 0.760 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.244 0.756 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.841 -1.687 2.598 20.081 hybrid contribution 0.630 -1.199 0.670 1.511 sum -19.211 -2.886 3.268 19.699 Atomic orbital electron populations 1.70554 1.07092 1.27781 1.24880 1.27014 0.96001 1.03841 0.94575 0.85367 0.79304 0.77162 0.78925 1.19190 1.19900 1.17936 1.19879 0.94650 0.90606 1.44650 0.89754 1.18880 0.87947 0.93334 0.88717 1.21804 0.99176 0.94123 1.20296 1.21029 0.93580 0.97241 0.93991 1.20917 0.95075 0.95901 1.25198 1.18836 0.84233 0.91113 0.93317 1.42383 1.03822 1.08378 1.76592 1.16725 0.82752 0.84884 0.80191 1.91391 1.64235 1.31971 1.50700 1.44989 1.03810 1.09799 1.81057 1.21029 0.90243 0.84512 1.01351 1.21222 0.91840 0.96923 0.99074 0.88865 1.22039 0.82803 0.98658 0.95691 1.86462 1.24015 1.84449 1.43392 1.22590 0.96420 0.95982 0.97534 0.89989 1.22801 0.93033 1.00584 0.99532 1.23426 0.89161 0.95505 0.96068 1.88849 1.18384 1.42760 1.82603 1.23743 0.89300 0.93968 0.96188 1.68647 1.07341 1.25336 1.21340 0.92065 0.87861 0.84505 0.84973 0.74552 0.75962 0.93157 0.92729 0.92638 0.93532 0.75623 0.89096 0.89953 0.91924 0.89190 0.89545 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -40.01 9.01 21.84 0.20 -39.82 16 2 C 0.01 0.63 5.49 85.29 0.47 1.10 16 3 Si 0.97 41.40 29.56 68.60 2.03 43.43 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.47 -26.99 9.13 23.47 0.21 -26.77 16 8 H 0.08 4.58 7.85 -2.91 -0.02 4.55 16 9 C 0.24 13.85 6.55 40.20 0.26 14.11 16 10 C -0.33 -16.86 9.83 22.87 0.22 -16.64 16 11 C -0.03 -1.49 10.15 22.39 0.23 -1.26 16 12 C -0.35 -14.62 9.95 22.72 0.23 -14.39 16 13 C 0.36 17.65 7.43 133.25 0.99 18.64 16 14 N -0.66 -25.10 5.39 -322.14 -1.74 -26.84 16 15 C 0.66 26.29 8.52 179.05 1.53 27.81 16 16 O -0.52 -26.94 12.11 -3.96 -0.05 -26.99 16 17 N -0.74 -19.65 5.24 -478.53 -2.51 -22.16 16 18 C 0.15 3.83 4.97 86.38 0.43 4.26 16 19 C -0.07 -1.22 1.68 -10.79 -0.02 -1.24 16 20 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 21 C 0.09 1.20 6.33 71.98 0.46 1.65 16 22 O -0.57 -6.53 10.70 -148.98 -1.59 -8.12 16 23 C -0.11 -1.91 2.65 -9.49 -0.03 -1.93 16 24 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 25 C -0.12 -1.88 5.00 31.58 0.16 -1.72 16 26 C 0.03 0.60 7.70 72.35 0.56 1.16 16 27 O -0.41 -9.83 11.52 -148.98 -1.72 -11.54 16 28 C 0.04 0.95 6.23 72.66 0.45 1.40 16 29 N -0.51 -29.44 5.75 -186.37 -1.07 -30.51 16 30 H 0.27 14.85 8.29 -92.71 -0.77 14.08 16 31 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 32 H 0.14 4.73 8.06 -2.91 -0.02 4.71 16 33 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 34 H 0.42 11.29 8.72 -92.71 -0.81 10.48 16 35 H 0.40 7.56 7.67 -92.72 -0.71 6.85 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.05 1.57 7.14 -2.39 -0.02 1.55 16 38 H 0.06 0.71 7.07 -2.39 -0.02 0.70 16 39 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.39 1.50 9.12 -74.06 -0.68 0.83 16 41 H 0.09 1.38 6.66 -2.39 -0.02 1.36 16 42 H 0.08 1.16 8.10 -2.39 -0.02 1.14 16 43 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.09 1.99 7.95 -2.39 -0.02 1.97 16 46 H 0.07 1.34 8.04 -2.39 -0.02 1.32 16 Total: -1.00 -79.35 371.87 -1.46 -80.80 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: -1.16 Total: 35.55 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 6.15 Total: 6.19 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -5.12 Total: -119.32 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -3.36 Total: -46.65 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -79.35 -1.46 -80.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477035223.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.463 kcal (2) G-P(sol) polarization free energy of solvation -79.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds