Wall clock time and date at job start Tue Mar 31 2020 18:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 120.00249 * 2 1 4 4 H 1.48504 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47226 * 299.99767 * 3 2 1 6 6 H 1.48501 * 109.46776 * 60.00195 * 3 2 1 7 7 C 1.40033 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.41333 * 119.99781 * 0.02562 * 7 2 1 10 10 C 1.40607 * 119.78916 * 180.02562 * 9 7 2 11 11 C 1.38312 * 119.13448 * 180.02562 * 10 9 7 12 12 C 1.38682 * 118.66593 * 359.97438 * 11 10 9 13 13 C 1.39642 * 119.50152 * 359.97438 * 12 11 10 14 14 N 1.39256 * 119.57830 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99822 * 185.33842 * 14 13 12 16 16 O 1.21574 * 120.00146 * 354.84678 * 15 14 13 17 17 N 1.34775 * 119.99656 * 174.84830 * 15 14 13 18 18 C 1.46504 * 120.00179 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.47452 * 179.97438 * 18 17 15 20 20 H 1.09000 * 109.46893 * 55.00053 * 19 18 17 21 21 C 1.53000 * 109.47201 * 295.00702 * 19 18 17 22 22 O 1.42894 * 109.47586 * 64.99577 * 21 19 18 23 23 C 1.52999 * 109.47160 * 175.00239 * 19 18 17 24 24 H 1.09000 * 110.98565 * 64.20117 * 23 19 18 25 25 C 1.55299 * 111.12364 * 300.00235 * 23 19 18 26 26 C 1.54392 * 102.25137 * 207.95000 * 25 23 19 27 27 O 1.43230 * 107.58549 * 21.35305 * 26 25 23 28 28 C 1.43642 * 109.97769 * 1.71590 * 27 26 25 29 29 N 1.31926 * 120.84788 * 0.28199 * 13 12 11 30 30 H 0.96999 * 119.99988 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.43180 * 0.02562 * 10 9 7 32 32 H 1.07996 * 120.66696 * 180.02562 * 11 10 9 33 33 H 1.08005 * 120.25218 * 180.02562 * 12 11 10 34 34 H 0.97002 * 119.99447 * 5.34189 * 14 13 12 35 35 H 0.97004 * 120.00355 * 0.02562 * 17 15 14 36 36 H 1.08999 * 109.46489 * 60.00375 * 18 17 15 37 37 H 1.08997 * 109.47391 * 300.00529 * 18 17 15 38 38 H 1.09001 * 109.47165 * 185.00141 * 21 19 18 39 39 H 1.09004 * 109.46657 * 304.99780 * 21 19 18 40 40 H 0.96700 * 114.00297 * 179.97438 * 22 21 19 41 41 H 1.08993 * 110.85273 * 89.75990 * 25 23 19 42 42 H 1.09007 * 110.84877 * 326.13426 * 25 23 19 43 43 H 1.09001 * 109.82259 * 261.84242 * 26 25 23 44 44 H 1.08997 * 109.90479 * 140.91631 * 26 25 23 45 45 H 1.09005 * 110.30745 * 94.47898 * 28 27 26 46 46 H 1.08998 * 110.31146 * 216.65314 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3963 1.2126 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3008 -2.4367 0.0005 10 6 2.0082 -3.6518 0.0016 11 6 1.3030 -4.8416 0.0011 12 6 -0.0830 -4.7934 0.0000 13 6 -0.7280 -3.5549 0.0001 14 7 -2.1197 -3.5046 -0.0016 15 6 -2.7510 -2.3188 -0.1101 16 8 -2.1091 -1.2863 -0.1123 17 7 -4.0939 -2.2777 -0.2163 18 6 -4.7803 -0.9887 -0.3337 19 6 -6.2887 -1.2219 -0.4397 20 1 -6.6248 -1.8175 0.4091 21 6 -6.5997 -1.9661 -1.7398 22 8 -6.0179 -3.2704 -1.6930 23 6 -7.0144 0.1250 -0.4369 24 1 -6.7518 0.7118 -1.3171 25 6 -6.7246 0.9142 0.8689 26 6 -7.9977 1.7743 1.0213 27 8 -9.0378 1.1458 0.2632 28 6 -8.5482 -0.0673 -0.3301 29 7 -0.0359 -2.4317 -0.0045 30 1 -0.4850 0.8400 -0.0004 31 1 3.0882 -3.6561 0.0029 32 1 1.8212 -5.7891 0.0023 33 1 -0.6593 -5.7069 0.0000 34 1 -2.6346 -4.3230 0.0755 35 1 -4.6061 -3.1014 -0.2142 36 1 -4.4296 -0.4704 -1.2262 37 1 -4.5670 -0.3819 0.5462 38 1 -7.6796 -2.0540 -1.8588 39 1 -6.1851 -1.4134 -2.5828 40 1 -6.1757 -3.8002 -2.4863 41 1 -5.8426 1.5440 0.7540 42 1 -6.6110 0.2362 1.7149 43 1 -7.8143 2.7775 0.6367 44 1 -8.2859 1.8278 2.0711 45 1 -8.7790 -0.9204 0.3078 46 1 -8.9820 -0.2060 -1.3204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477035226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:00 Heat of formation + Delta-G solvation = -65.830712 kcal Electronic energy + Delta-G solvation = -29333.129604 eV Core-core repulsion = 25223.821236 eV Total energy + Delta-G solvation = -4109.308368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.12456 -39.25123 -37.91408 -37.18544 -35.06889 -33.94004 -32.93548 -32.85704 -30.59985 -30.20166 -29.10177 -28.16830 -25.91710 -25.26657 -22.97687 -22.15037 -21.71347 -21.04208 -20.53852 -19.54574 -18.00180 -17.53154 -17.23962 -16.68405 -16.15960 -15.91328 -15.78754 -14.89625 -14.78425 -14.50760 -14.38643 -14.25885 -14.07105 -13.76353 -13.61526 -13.17275 -12.91742 -12.84083 -12.75326 -12.00751 -11.97670 -11.92236 -11.79379 -11.49636 -11.28148 -11.11745 -10.99126 -10.87892 -10.75406 -10.56393 -10.39878 -10.15845 -9.84275 -9.81775 -9.59998 -8.96573 -8.94538 -8.23268 -7.87023 -7.11284 -6.83721 -6.03299 -4.31806 2.90923 3.20302 3.21241 3.24896 3.32933 3.33351 3.53867 3.90020 4.12150 4.16680 4.36049 4.42975 4.65730 4.70206 4.84763 4.90525 4.94832 5.03465 5.08092 5.16719 5.27927 5.36495 5.41738 5.44530 5.54227 5.59537 5.69063 5.86463 6.01465 6.12529 6.13658 6.18630 6.56533 6.67831 6.72995 6.89612 6.92924 7.19907 7.32176 7.38807 7.54382 7.71641 7.88593 7.89874 8.26724 8.40676 8.81068 8.92912 9.14450 9.77035 10.36413 10.57336 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012234 B = 0.003242 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.086335 B = 8635.351145 C =10550.455349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.647 5.647 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.427 4.427 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.308 4.308 11 C -0.036 4.036 12 C -0.359 4.359 13 C 0.389 3.611 14 N -0.673 5.673 15 C 0.662 3.338 16 O -0.470 6.470 17 N -0.750 5.750 18 C 0.156 3.844 19 C -0.089 4.089 20 H 0.086 0.914 21 C 0.082 3.918 22 O -0.568 6.568 23 C -0.113 4.113 24 H 0.094 0.906 25 C -0.152 4.152 26 C 0.050 3.950 27 O -0.387 6.387 28 C 0.056 3.944 29 N -0.471 5.471 30 H 0.270 0.730 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.394 0.606 35 H 0.394 0.606 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.381 0.619 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.305 -0.785 -1.855 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.265 5.265 2 C -0.173 4.173 3 Si 0.717 3.283 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.457 4.457 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.331 4.331 11 C -0.061 4.061 12 C -0.385 4.385 13 C 0.149 3.851 14 N -0.322 5.322 15 C 0.360 3.640 16 O -0.335 6.335 17 N -0.413 5.413 18 C 0.030 3.970 19 C -0.108 4.108 20 H 0.105 0.895 21 C 0.004 3.996 22 O -0.374 6.374 23 C -0.132 4.132 24 H 0.112 0.888 25 C -0.189 4.189 26 C -0.026 4.026 27 O -0.306 6.306 28 C -0.020 4.020 29 N -0.190 5.190 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.227 0.773 35 H 0.230 0.770 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.229 0.771 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.348 1.528 -1.315 18.458 hybrid contribution 0.301 -1.263 -0.529 1.401 sum -18.047 0.265 -1.843 18.143 Atomic orbital electron populations 1.70382 1.05513 1.27021 1.23616 1.26196 0.95119 1.00449 0.95515 0.86515 0.80972 0.82543 0.78260 1.18643 1.20165 1.20154 1.19590 0.93996 0.89383 1.42758 0.90031 1.18417 0.87239 0.91936 0.87838 1.21613 0.98472 0.93577 1.19471 1.20535 0.93143 0.96471 0.95914 1.20446 0.94736 0.94857 1.28486 1.18362 0.82598 0.90807 0.93347 1.42560 1.05073 1.07983 1.76553 1.16466 0.81582 0.85351 0.80580 1.91367 1.62659 1.29900 1.49599 1.45277 1.05542 1.08771 1.81702 1.20913 0.88316 0.85958 1.01777 1.21358 0.96129 0.94860 0.98429 0.89549 1.22215 0.96055 0.84016 0.97270 1.86314 1.79089 1.27034 1.44983 1.22750 0.95013 0.95862 0.99592 0.88817 1.23214 0.98843 0.99212 0.97662 1.23146 0.86698 0.96642 0.96118 1.88392 1.36325 1.37740 1.68152 1.23461 0.92495 0.87785 0.98268 1.68718 1.06766 1.23155 1.20352 0.91826 0.88680 0.88715 0.89224 0.77310 0.76965 0.92350 0.91952 0.93689 0.93264 0.77142 0.89149 0.89994 0.91161 0.91374 0.91936 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.40 8.98 55.55 0.50 -17.90 16 2 C 0.06 1.53 5.50 -17.34 -0.10 1.43 16 3 Si 0.89 19.63 29.56 -169.99 -5.02 14.61 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.43 -12.04 9.14 -37.73 -0.34 -12.38 16 8 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 9 C 0.27 7.84 6.55 -85.00 -0.56 7.28 16 10 C -0.31 -7.98 9.83 -38.66 -0.38 -8.36 16 11 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 12 C -0.36 -8.35 9.95 -38.89 -0.39 -8.73 16 13 C 0.39 9.86 7.43 -154.98 -1.15 8.71 16 14 N -0.67 -14.07 5.39 -15.79 -0.09 -14.15 16 15 C 0.66 14.20 8.52 -86.92 -0.74 13.46 16 16 O -0.47 -12.37 12.10 5.30 0.06 -12.30 16 17 N -0.75 -11.78 5.01 -65.23 -0.33 -12.11 16 18 C 0.16 2.11 4.93 -4.04 -0.02 2.09 16 19 C -0.09 -0.82 1.81 -90.62 -0.16 -0.98 16 20 H 0.09 0.81 8.06 -51.93 -0.42 0.39 16 21 C 0.08 0.66 6.36 37.16 0.24 0.90 16 22 O -0.57 -4.95 10.88 -35.23 -0.38 -5.33 16 23 C -0.11 -0.93 2.61 -88.37 -0.23 -1.16 16 24 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 25 C -0.15 -1.30 5.31 -24.78 -0.13 -1.43 16 26 C 0.05 0.43 7.79 37.89 0.30 0.73 16 27 O -0.39 -4.00 11.36 -35.23 -0.40 -4.40 16 28 C 0.06 0.45 6.50 38.19 0.25 0.70 16 29 N -0.47 -13.68 5.73 -10.26 -0.06 -13.74 16 30 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 31 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 32 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 34 H 0.39 6.52 8.71 -40.82 -0.36 6.17 16 35 H 0.39 5.33 6.31 -40.82 -0.26 5.08 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.92 7.09 -51.93 -0.37 0.55 16 38 H 0.04 0.27 7.35 -51.93 -0.38 -0.11 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.38 1.89 9.12 45.56 0.42 2.31 16 41 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 42 H 0.08 0.71 8.03 -51.93 -0.42 0.29 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.47 7.97 -51.93 -0.41 0.06 16 46 H 0.08 0.56 8.01 -51.93 -0.42 0.15 16 LS Contribution 372.47 15.07 5.61 5.61 Total: -1.00 -35.70 372.47 -9.89 -45.59 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -5.96 Total: 13.12 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -3.82 Total: 1.00 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.03 Total: -57.90 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.72 Total: -22.03 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.70 -9.89 -45.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477035226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.243 kcal (2) G-P(sol) polarization free energy of solvation -35.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds