Wall clock time and date at job start Tue Mar 31 2020 18:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 120.00249 * 2 1 4 4 H 1.48504 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47226 * 299.99767 * 3 2 1 6 6 H 1.48501 * 109.46776 * 60.00195 * 3 2 1 7 7 C 1.40033 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.41333 * 119.99781 * 0.02562 * 7 2 1 10 10 C 1.40607 * 119.78916 * 180.02562 * 9 7 2 11 11 C 1.38312 * 119.13448 * 180.02562 * 10 9 7 12 12 C 1.38682 * 118.66593 * 359.97438 * 11 10 9 13 13 C 1.39642 * 119.50152 * 359.97438 * 12 11 10 14 14 N 1.39256 * 119.57830 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99822 * 185.33842 * 14 13 12 16 16 O 1.21574 * 120.00146 * 354.84678 * 15 14 13 17 17 N 1.34775 * 119.99656 * 174.84830 * 15 14 13 18 18 C 1.46504 * 120.00179 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.47452 * 179.97438 * 18 17 15 20 20 H 1.09000 * 109.46893 * 55.00053 * 19 18 17 21 21 C 1.53000 * 109.47201 * 295.00702 * 19 18 17 22 22 O 1.42894 * 109.47586 * 64.99577 * 21 19 18 23 23 C 1.52999 * 109.47160 * 175.00239 * 19 18 17 24 24 H 1.09000 * 110.98565 * 64.20117 * 23 19 18 25 25 C 1.55299 * 111.12364 * 300.00235 * 23 19 18 26 26 C 1.54392 * 102.25137 * 207.95000 * 25 23 19 27 27 O 1.43230 * 107.58549 * 21.35305 * 26 25 23 28 28 C 1.43642 * 109.97769 * 1.71590 * 27 26 25 29 29 N 1.31926 * 120.84788 * 0.28199 * 13 12 11 30 30 H 0.96999 * 119.99988 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.43180 * 0.02562 * 10 9 7 32 32 H 1.07996 * 120.66696 * 180.02562 * 11 10 9 33 33 H 1.08005 * 120.25218 * 180.02562 * 12 11 10 34 34 H 0.97002 * 119.99447 * 5.34189 * 14 13 12 35 35 H 0.97004 * 120.00355 * 0.02562 * 17 15 14 36 36 H 1.08999 * 109.46489 * 60.00375 * 18 17 15 37 37 H 1.08997 * 109.47391 * 300.00529 * 18 17 15 38 38 H 1.09001 * 109.47165 * 185.00141 * 21 19 18 39 39 H 1.09004 * 109.46657 * 304.99780 * 21 19 18 40 40 H 0.96700 * 114.00297 * 179.97438 * 22 21 19 41 41 H 1.08993 * 110.85273 * 89.75990 * 25 23 19 42 42 H 1.09007 * 110.84877 * 326.13426 * 25 23 19 43 43 H 1.09001 * 109.82259 * 261.84242 * 26 25 23 44 44 H 1.08997 * 109.90479 * 140.91631 * 26 25 23 45 45 H 1.09005 * 110.30745 * 94.47898 * 28 27 26 46 46 H 1.08998 * 110.31146 * 216.65314 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3963 1.2126 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3008 -2.4367 0.0005 10 6 2.0082 -3.6518 0.0016 11 6 1.3030 -4.8416 0.0011 12 6 -0.0830 -4.7934 0.0000 13 6 -0.7280 -3.5549 0.0001 14 7 -2.1197 -3.5046 -0.0016 15 6 -2.7510 -2.3188 -0.1101 16 8 -2.1091 -1.2863 -0.1123 17 7 -4.0939 -2.2777 -0.2163 18 6 -4.7803 -0.9887 -0.3337 19 6 -6.2887 -1.2219 -0.4397 20 1 -6.6248 -1.8175 0.4091 21 6 -6.5997 -1.9661 -1.7398 22 8 -6.0179 -3.2704 -1.6930 23 6 -7.0144 0.1250 -0.4369 24 1 -6.7518 0.7118 -1.3171 25 6 -6.7246 0.9142 0.8689 26 6 -7.9977 1.7743 1.0213 27 8 -9.0378 1.1458 0.2632 28 6 -8.5482 -0.0673 -0.3301 29 7 -0.0359 -2.4317 -0.0045 30 1 -0.4850 0.8400 -0.0004 31 1 3.0882 -3.6561 0.0029 32 1 1.8212 -5.7891 0.0023 33 1 -0.6593 -5.7069 0.0000 34 1 -2.6346 -4.3230 0.0755 35 1 -4.6061 -3.1014 -0.2142 36 1 -4.4296 -0.4704 -1.2262 37 1 -4.5670 -0.3819 0.5462 38 1 -7.6796 -2.0540 -1.8588 39 1 -6.1851 -1.4134 -2.5828 40 1 -6.1757 -3.8002 -2.4863 41 1 -5.8426 1.5440 0.7540 42 1 -6.6110 0.2362 1.7149 43 1 -7.8143 2.7775 0.6367 44 1 -8.2859 1.8278 2.0711 45 1 -8.7790 -0.9204 0.3078 46 1 -8.9820 -0.2060 -1.3204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001477035226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:59 Heat of formation + Delta-G solvation = -92.571174 kcal Electronic energy + Delta-G solvation = -29334.289158 eV Core-core repulsion = 25223.821236 eV Total energy + Delta-G solvation = -4110.467921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.18601 -40.63355 -39.48529 -38.22949 -36.12032 -35.66809 -34.77779 -34.15213 -32.17561 -31.39754 -30.78555 -29.14210 -27.49265 -26.61604 -24.13818 -23.33918 -22.85553 -22.80631 -21.53919 -21.02048 -19.71831 -18.78665 -18.19594 -17.97236 -17.58825 -16.78053 -16.67261 -16.48818 -16.24012 -15.99753 -15.66739 -15.55917 -15.37701 -15.08483 -14.64219 -14.52108 -14.42295 -14.21384 -13.88116 -13.67444 -13.53905 -12.89855 -12.78032 -12.70745 -12.65926 -12.51681 -12.29185 -12.24389 -12.05668 -11.72354 -11.70693 -11.54142 -11.45565 -10.85449 -10.83718 -10.73439 -10.49350 -9.87387 -9.68464 -9.06667 -8.73351 -7.99285 -6.38741 0.99244 1.30989 1.39756 1.52797 1.54620 1.90159 2.28009 2.64085 2.84869 3.07421 3.22220 3.29723 3.65933 3.70750 3.96424 4.07359 4.10523 4.21379 4.23136 4.26317 4.39273 4.43050 4.54873 4.64099 4.71089 4.76408 4.77261 4.83557 4.87399 4.89199 4.93257 4.98997 5.03504 5.07654 5.09928 5.29304 5.31488 5.69937 5.84855 5.91042 5.95442 6.01735 6.10245 6.37567 6.48126 6.85207 6.95036 7.10909 7.40081 8.11129 8.42349 8.61578 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012234 B = 0.003242 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.086335 B = 8635.351145 C =10550.455349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.684 5.684 2 C 0.009 3.991 3 Si 0.973 3.027 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.467 4.467 8 H 0.085 0.915 9 C 0.236 3.764 10 C -0.331 4.331 11 C -0.034 4.034 12 C -0.347 4.347 13 C 0.366 3.634 14 N -0.662 5.662 15 C 0.653 3.347 16 O -0.522 6.522 17 N -0.725 5.725 18 C 0.156 3.844 19 C -0.074 4.074 20 H 0.092 0.908 21 C 0.083 3.917 22 O -0.587 6.587 23 C -0.107 4.107 24 H 0.094 0.906 25 C -0.154 4.154 26 C 0.050 3.950 27 O -0.407 6.407 28 C 0.058 3.942 29 N -0.507 5.507 30 H 0.268 0.732 31 H 0.104 0.896 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.415 0.585 35 H 0.408 0.592 36 H 0.039 0.961 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.398 0.602 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.691 -2.135 -2.169 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.303 5.303 2 C -0.216 4.216 3 Si 0.794 3.206 4 H -0.177 1.177 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.497 4.497 8 H 0.103 0.897 9 C 0.110 3.890 10 C -0.354 4.354 11 C -0.058 4.058 12 C -0.373 4.373 13 C 0.126 3.874 14 N -0.312 5.312 15 C 0.352 3.648 16 O -0.391 6.391 17 N -0.388 5.388 18 C 0.031 3.969 19 C -0.093 4.093 20 H 0.110 0.890 21 C 0.005 3.995 22 O -0.396 6.396 23 C -0.126 4.126 24 H 0.113 0.887 25 C -0.191 4.191 26 C -0.026 4.026 27 O -0.327 6.327 28 C -0.018 4.018 29 N -0.226 5.226 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.252 0.748 35 H 0.247 0.753 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.249 0.751 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.805 0.102 -1.641 19.874 hybrid contribution 0.649 -1.037 -0.434 1.298 sum -19.157 -0.936 -2.075 19.291 Atomic orbital electron populations 1.70591 1.07130 1.27657 1.24930 1.27055 0.96013 1.03951 0.94597 0.85302 0.79651 0.77299 0.78330 1.17708 1.19639 1.19591 1.19910 0.94366 0.90472 1.45002 0.89692 1.18918 0.87976 0.93448 0.88631 1.21802 0.99170 0.93848 1.20628 1.21020 0.93458 0.97337 0.93972 1.20917 0.95168 0.95545 1.25639 1.18867 0.84242 0.91068 0.93250 1.42413 1.03831 1.08984 1.76020 1.16802 0.83018 0.84797 0.80224 1.91358 1.64240 1.31612 1.51842 1.45070 1.03570 1.10322 1.79877 1.21020 0.91138 0.84613 1.00169 1.21237 0.92513 0.95801 0.99734 0.88958 1.22222 0.97677 0.83629 0.95930 1.86226 1.79508 1.27386 1.46444 1.22686 0.95478 0.95125 0.99342 0.88740 1.23204 0.98688 0.99272 0.97958 1.23193 0.86242 0.96713 0.96477 1.88369 1.37134 1.38663 1.68511 1.23563 0.91690 0.87306 0.99266 1.68673 1.07184 1.25354 1.21438 0.92144 0.87781 0.84447 0.85128 0.74814 0.75251 0.94264 0.93468 0.90805 0.93770 0.75136 0.89984 0.90150 0.90730 0.90696 0.91120 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -40.75 8.98 21.84 0.20 -40.56 16 2 C 0.01 0.53 5.50 85.29 0.47 1.00 16 3 Si 0.97 41.77 29.56 68.60 2.03 43.80 16 4 H -0.25 -10.36 7.11 99.48 0.71 -9.66 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.47 -27.36 9.14 23.47 0.21 -27.15 16 8 H 0.08 4.67 7.85 -2.91 -0.02 4.65 16 9 C 0.24 14.09 6.55 40.20 0.26 14.35 16 10 C -0.33 -17.24 9.83 22.87 0.22 -17.02 16 11 C -0.03 -1.51 10.15 22.39 0.23 -1.28 16 12 C -0.35 -15.34 9.95 22.72 0.23 -15.11 16 13 C 0.37 18.50 7.43 133.24 0.99 19.49 16 14 N -0.66 -27.30 5.39 -322.14 -1.74 -29.04 16 15 C 0.65 28.43 8.52 179.06 1.53 29.96 16 16 O -0.52 -28.62 12.10 -3.95 -0.05 -28.66 16 17 N -0.73 -22.56 5.01 -478.55 -2.40 -24.96 16 18 C 0.16 4.27 4.93 86.38 0.43 4.70 16 19 C -0.07 -1.26 1.81 -10.79 -0.02 -1.28 16 20 H 0.09 1.52 8.06 -2.39 -0.02 1.50 16 21 C 0.08 1.14 6.36 71.98 0.46 1.60 16 22 O -0.59 -8.79 10.88 -148.98 -1.62 -10.41 16 23 C -0.11 -1.63 2.61 -9.34 -0.02 -1.65 16 24 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 25 C -0.15 -2.59 5.31 31.86 0.17 -2.42 16 26 C 0.05 0.82 7.79 72.45 0.56 1.38 16 27 O -0.41 -7.80 11.36 -148.98 -1.69 -9.49 16 28 C 0.06 0.80 6.50 72.65 0.47 1.27 16 29 N -0.51 -30.30 5.73 -186.37 -1.07 -31.37 16 30 H 0.27 15.03 8.29 -92.71 -0.77 14.26 16 31 H 0.10 5.04 8.06 -2.91 -0.02 5.01 16 32 H 0.14 4.90 8.06 -2.91 -0.02 4.88 16 33 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 34 H 0.42 12.93 8.71 -92.71 -0.81 12.12 16 35 H 0.41 10.41 6.31 -92.71 -0.58 9.83 16 36 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.05 1.45 7.09 -2.39 -0.02 1.43 16 38 H 0.07 0.64 7.35 -2.39 -0.02 0.62 16 39 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.40 2.91 9.12 -74.06 -0.68 2.24 16 41 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 42 H 0.08 1.37 8.03 -2.38 -0.02 1.35 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.07 0.87 7.97 -2.38 -0.02 0.85 16 46 H 0.10 1.05 8.01 -2.39 -0.02 1.03 16 Total: -1.00 -81.12 372.47 -1.19 -82.31 By element: Atomic # 1 Polarization: 41.61 SS G_CDS: -1.04 Total: 40.57 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 6.19 Total: 7.82 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -5.01 Total: -125.93 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -3.36 Total: -48.57 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -81.12 -1.19 -82.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477035226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.265 kcal (2) G-P(sol) polarization free energy of solvation -81.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds