Wall clock time and date at job start Tue Mar 31 2020 18:35:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86795 * 119.99783 * 2 1
4 4 H 1.48496 * 109.47207 * 269.99893 * 3 2 1
5 5 H 1.48499 * 109.47191 * 30.00453 * 3 2 1
6 6 H 1.48500 * 109.47111 * 149.99902 * 3 2 1
7 7 C 1.38813 * 119.99841 * 180.02562 * 2 1 3
8 8 H 1.08006 * 119.99514 * 179.97438 * 7 2 1
9 9 N 1.36933 * 120.00571 * 0.02562 * 7 2 1
10 10 C 1.46501 * 120.00176 * 179.97438 * 9 7 2
11 11 H 1.08994 * 112.84922 * 336.20183 * 10 9 7
12 12 C 1.53957 * 113.74035 * 107.40347 * 10 9 7
13 13 C 1.53783 * 87.01875 * 139.94464 * 12 10 9
14 14 H 1.08990 * 113.61571 * 89.22675 * 13 12 10
15 15 C 1.53000 * 113.61182 * 220.05000 * 13 12 10
16 16 N 1.46499 * 109.46840 * 274.13267 * 15 13 12
17 17 C 1.34779 * 119.99872 * 180.02562 * 16 15 13
18 18 O 1.21278 * 120.00071 * 359.97438 * 17 16 15
19 19 C 1.50703 * 119.99944 * 180.02562 * 17 16 15
20 20 O 1.42903 * 109.46904 * 180.02562 * 19 17 16
21 21 C 1.42906 * 113.99632 * 180.02562 * 20 19 17
22 22 C 1.50697 * 109.46919 * 179.97438 * 21 20 19
23 23 C 1.38821 * 120.75906 * 269.72285 * 22 21 20
24 24 C 1.38049 * 119.29166 * 179.75007 * 23 22 21
25 25 N 1.31967 * 120.83283 * 0.53314 * 24 23 22
26 26 C 1.32246 * 121.64741 * 359.71491 * 25 24 23
27 27 O 1.35682 * 119.68625 * 179.97438 * 26 25 24
28 28 C 1.38383 * 120.75434 * 89.99956 * 22 21 20
29 29 C 1.53778 * 113.61233 * 205.00041 * 10 9 7
30 30 H 0.96997 * 120.00422 * 359.97438 * 1 2 3
31 31 H 0.97002 * 119.99708 * 359.97438 * 9 7 2
32 32 H 1.09003 * 113.61309 * 25.42314 * 12 10 9
33 33 H 1.09000 * 113.66774 * 254.47065 * 12 10 9
34 34 H 1.09002 * 109.47398 * 34.13594 * 15 13 12
35 35 H 1.09001 * 109.47194 * 154.13774 * 15 13 12
36 36 H 0.97000 * 120.00420 * 0.02562 * 16 15 13
37 37 H 1.09002 * 109.47152 * 300.00160 * 19 17 16
38 38 H 1.09001 * 109.46980 * 60.00059 * 19 17 16
39 39 H 1.08999 * 109.46804 * 299.99988 * 21 20 19
40 40 H 1.08998 * 109.47480 * 59.99582 * 21 20 19
41 41 H 1.08003 * 120.35210 * 359.97438 * 23 22 21
42 42 H 1.07996 * 119.58912 * 180.24644 * 24 23 22
43 43 H 0.96696 * 113.99874 * 270.02316 * 27 26 25
44 44 H 1.07995 * 120.44766 * 359.97438 * 28 22 21
45 45 H 1.09000 * 113.61215 * 105.39106 * 29 10 9
46 46 H 1.09002 * 113.61764 * 334.48286 * 29 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4976 2.0464 -1.4000
5 1 1.4476 2.6526 0.7001
6 1 3.5477 1.4402 0.7001
7 6 2.0103 -1.2022 -0.0005
8 1 3.0903 -1.2021 -0.0010
9 7 1.3257 -2.3881 -0.0016
10 6 2.0582 -3.6568 -0.0027
11 1 3.0657 -3.5634 -0.4079
12 6 2.0031 -4.4055 1.3414
13 6 1.8499 -5.6986 0.5232
14 1 2.7997 -6.1646 0.2611
15 6 0.8480 -6.6877 1.1221
16 7 1.5227 -7.5226 2.1191
17 6 0.8324 -8.4722 2.7812
18 8 -0.3473 -8.6352 2.5519
19 6 1.5263 -9.3307 3.8072
20 8 0.5908 -10.2554 4.3657
21 6 1.1499 -11.1213 5.3556
22 6 0.0807 -12.0484 5.8737
23 6 -0.6948 -11.6956 6.9697
24 6 -1.6693 -12.5657 7.4157
25 7 -1.8627 -13.7274 6.8202
26 6 -1.1411 -14.1010 5.7769
27 8 -1.3734 -15.3047 5.1954
28 6 -0.1465 -13.2732 5.2711
29 6 1.2603 -4.8282 -0.5993
30 1 -0.4850 0.8400 0.0004
31 1 0.3557 -2.3881 -0.0016
32 1 1.1262 -4.1619 1.9413
33 1 2.9325 -4.3553 1.9086
34 1 0.0354 -6.1387 1.5979
35 1 0.4450 -7.3204 0.3313
36 1 2.4661 -7.3921 2.3028
37 1 2.3394 -9.8794 3.3319
38 1 1.9286 -8.6979 4.5983
39 1 1.9557 -11.7067 4.9129
40 1 1.5438 -10.5254 6.1789
41 1 -0.5398 -10.7489 7.4659
42 1 -2.2781 -12.2944 8.2654
43 1 -0.8524 -16.0288 5.5686
44 1 0.4410 -13.5813 4.4190
45 1 1.5910 -5.1188 -1.5964
46 1 0.1800 -4.7005 -0.5309
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001479303492.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:35:50
Heat of formation + Delta-G solvation = -50.207321 kcal
Electronic energy + Delta-G solvation = -26696.855968 eV
Core-core repulsion = 22588.225081 eV
Total energy + Delta-G solvation = -4108.630887 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-40.95240 -39.98940 -38.69218 -38.03161 -37.32415 -34.72819 -33.71065 -33.31957
-30.72951 -30.47981 -29.32947 -27.42900 -26.08020 -25.12212 -23.95371 -23.80915
-22.56819 -21.11446 -20.82696 -19.15826 -18.92785 -17.58532 -17.47784 -17.27806
-17.04184 -16.63681 -16.41015 -16.07059 -15.76140 -15.19398 -14.93235 -14.78472
-14.59011 -14.25446 -13.66480 -13.59370 -13.49243 -13.31666 -12.99024 -12.74325
-12.32070 -12.27870 -12.13451 -11.92631 -11.84507 -11.43062 -11.25548 -10.86548
-10.55116 -10.35243 -10.26712 -10.25994 -10.16391 -9.93413 -9.85879 -9.84634
-9.51309 -9.40362 -9.10045 -8.89202 -6.98726 -5.80324 -3.09448 0.52329
0.58761 2.47041 2.55842 3.03705 3.27477 3.40983 3.45976 3.47980
3.68050 4.11945 4.19183 4.47369 4.52848 4.56119 4.56228 4.62770
4.69021 4.78248 4.81581 4.93986 4.97428 5.01310 5.19268 5.20798
5.36846 5.44176 5.46682 5.73240 5.78566 5.81081 5.89722 6.00882
6.06470 6.20319 6.27608 6.32199 6.37968 6.49139 6.55836 6.79165
7.00867 7.08068 7.36602 7.44100 7.66625 8.09638 8.38093 9.49133
10.07405 10.41466 11.41980
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.027541 B = 0.001432 C = 0.001409
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1016.421391 B =19544.979537 C =19867.055745
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C -0.013 4.013
3 Si 0.907 3.093
4 H -0.289 1.289
5 H -0.291 1.291
6 H -0.282 1.282
7 C -0.246 4.246
8 H 0.071 0.929
9 N -0.713 5.713
10 C 0.166 3.834
11 H 0.075 0.925
12 C -0.161 4.161
13 C -0.127 4.127
14 H 0.088 0.912
15 C 0.133 3.867
16 N -0.723 5.723
17 C 0.509 3.491
18 O -0.520 6.520
19 C 0.044 3.956
20 O -0.354 6.354
21 C 0.099 3.901
22 C -0.030 4.030
23 C -0.160 4.160
24 C 0.123 3.877
25 N -0.500 5.500
26 C 0.308 3.692
27 O -0.481 6.481
28 C -0.163 4.163
29 C -0.142 4.142
30 H 0.256 0.744
31 H 0.385 0.615
32 H 0.078 0.922
33 H 0.053 0.947
34 H 0.071 0.929
35 H 0.065 0.935
36 H 0.400 0.600
37 H 0.082 0.918
38 H 0.083 0.917
39 H 0.067 0.933
40 H 0.069 0.931
41 H 0.143 0.857
42 H 0.165 0.835
43 H 0.400 0.600
44 H 0.143 0.857
45 H 0.062 0.938
46 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.798 -29.084 13.887 32.938
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.579 5.579
2 C -0.209 4.209
3 Si 0.738 3.262
4 H -0.217 1.217
5 H -0.218 1.218
6 H -0.208 1.208
7 C -0.377 4.377
8 H 0.089 0.911
9 N -0.350 5.350
10 C 0.054 3.946
11 H 0.093 0.907
12 C -0.203 4.203
13 C -0.146 4.146
14 H 0.106 0.894
15 C 0.011 3.989
16 N -0.377 5.377
17 C 0.293 3.707
18 O -0.395 6.395
19 C -0.036 4.036
20 O -0.273 6.273
21 C 0.023 3.977
22 C -0.038 4.038
23 C -0.179 4.179
24 C -0.034 4.034
25 N -0.219 5.219
26 C 0.129 3.871
27 O -0.288 6.288
28 C -0.185 4.185
29 C -0.182 4.182
30 H 0.066 0.934
31 H 0.220 0.780
32 H 0.097 0.903
33 H 0.072 0.928
34 H 0.089 0.911
35 H 0.083 0.917
36 H 0.234 0.766
37 H 0.099 0.901
38 H 0.101 0.899
39 H 0.085 0.915
40 H 0.087 0.913
41 H 0.161 0.839
42 H 0.182 0.818
43 H 0.257 0.743
44 H 0.160 0.840
45 H 0.080 0.920
46 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 4.815 -29.309 13.559 32.651
hybrid contribution 1.789 1.222 0.134 2.171
sum 6.604 -28.087 13.692 31.937
Atomic orbital electron populations
1.69660 1.05148 1.25784 1.57344 1.24774 0.95517 0.97802 1.02778
0.86187 0.78638 0.83802 0.77530 1.21673 1.21755 1.20755 1.19303
0.91066 0.84257 1.43074 0.91096 1.42412 1.05781 0.99880 1.86965
1.21546 0.95306 0.85059 0.92736 0.90685 1.23982 1.01322 0.94974
0.99976 1.22641 0.98355 0.94357 0.99262 0.89351 1.21463 0.95450
0.91884 0.90150 1.45921 1.13823 1.36140 1.41768 1.20154 0.87547
0.80894 0.82075 1.90763 1.15493 1.68383 1.64819 1.22260 0.92304
0.92529 0.96533 1.88110 1.34724 1.48670 1.55748 1.21365 0.93298
0.91317 0.91758 1.19847 0.96164 0.93505 0.94254 1.22136 0.96810
1.01292 0.97709 1.22555 0.95072 0.87947 0.97813 1.67171 1.26546
1.19199 1.09029 1.19138 0.90349 0.88029 0.89566 1.84821 1.68949
1.16158 1.58834 1.22041 0.98891 0.95658 1.01870 1.23450 1.01093
0.96965 0.96709 0.93421 0.78047 0.90346 0.92769 0.91088 0.91653
0.76568 0.90052 0.89884 0.91480 0.91253 0.83938 0.81819 0.74260
0.83954 0.91953 0.90066
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16
2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16
3 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16
4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
7 C -0.25 -6.73 9.97 -15.06 -0.15 -6.88 16
8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16
9 N -0.71 -17.56 5.41 -52.55 -0.28 -17.84 16
10 C 0.17 3.12 4.48 -67.03 -0.30 2.82 16
11 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16
12 C -0.16 -2.54 7.45 -25.82 -0.19 -2.74 16
13 C -0.13 -1.60 3.75 -89.80 -0.34 -1.93 16
14 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16
15 C 0.13 1.68 5.50 -4.04 -0.02 1.66 16
16 N -0.72 -7.41 5.56 -60.29 -0.33 -7.74 16
17 C 0.51 6.14 7.91 -10.98 -0.09 6.06 16
18 O -0.52 -9.06 16.50 -14.35 -0.24 -9.30 16
19 C 0.04 0.34 6.42 36.01 0.23 0.57 16
20 O -0.35 -3.65 9.86 -55.14 -0.54 -4.19 16
21 C 0.10 0.62 6.11 36.00 0.22 0.84 16
22 C -0.03 -0.23 5.54 -104.35 -0.58 -0.81 16
23 C -0.16 -1.13 9.81 -39.44 -0.39 -1.51 16
24 C 0.12 0.94 11.18 -17.56 -0.20 0.75 16
25 N -0.50 -5.03 10.39 -13.33 -0.14 -5.17 16
26 C 0.31 2.86 7.75 -17.12 -0.13 2.72 16
27 O -0.48 -3.83 13.56 -18.75 -0.25 -4.08 16
28 C -0.16 -1.31 9.75 -39.27 -0.38 -1.70 16
29 C -0.14 -2.20 7.40 -25.92 -0.19 -2.39 16
30 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16
31 H 0.39 10.16 7.92 -40.82 -0.32 9.84 16
32 H 0.08 1.39 7.92 -51.93 -0.41 0.97 16
33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
34 H 0.07 1.05 7.88 -51.93 -0.41 0.64 16
35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
36 H 0.40 2.82 8.47 -40.82 -0.35 2.47 16
37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
39 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16
40 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16
41 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16
42 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16
43 H 0.40 0.96 9.06 45.56 0.41 1.37 16
44 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16
45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
46 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16
LS Contribution 396.48 15.07 5.97 5.97
Total: -1.00 -38.03 396.48 -8.83 -46.86
By element:
Atomic # 1 Polarization: 14.80 SS G_CDS: -6.11 Total: 8.69 kcal
Atomic # 6 Polarization: -0.39 SS G_CDS: -2.60 Total: -3.00 kcal
Atomic # 7 Polarization: -58.00 SS G_CDS: -0.03 Total: -58.03 kcal
Atomic # 8 Polarization: -16.54 SS G_CDS: -1.03 Total: -17.57 kcal
Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -38.03 -8.83 -46.86 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001479303492.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.349 kcal
(2) G-P(sol) polarization free energy of solvation -38.031 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.380 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.858 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.207 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds