Wall clock time and date at job start Tue Mar 31 2020 18:35:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86795 * 119.99783 * 2 1
4 4 H 1.48496 * 109.47207 * 269.99893 * 3 2 1
5 5 H 1.48499 * 109.47191 * 30.00453 * 3 2 1
6 6 H 1.48500 * 109.47111 * 149.99902 * 3 2 1
7 7 C 1.38813 * 119.99841 * 180.02562 * 2 1 3
8 8 H 1.08006 * 119.99514 * 179.97438 * 7 2 1
9 9 N 1.36933 * 120.00571 * 0.02562 * 7 2 1
10 10 C 1.46501 * 120.00176 * 179.97438 * 9 7 2
11 11 H 1.08994 * 112.84922 * 336.20183 * 10 9 7
12 12 C 1.53957 * 113.74035 * 107.40347 * 10 9 7
13 13 C 1.53783 * 87.01875 * 139.94464 * 12 10 9
14 14 H 1.08990 * 113.61571 * 89.22675 * 13 12 10
15 15 C 1.53000 * 113.61182 * 220.05000 * 13 12 10
16 16 N 1.46499 * 109.46840 * 274.13267 * 15 13 12
17 17 C 1.34779 * 119.99872 * 180.02562 * 16 15 13
18 18 O 1.21278 * 120.00071 * 359.97438 * 17 16 15
19 19 C 1.50703 * 119.99944 * 180.02562 * 17 16 15
20 20 O 1.42903 * 109.46904 * 180.02562 * 19 17 16
21 21 C 1.42906 * 113.99632 * 180.02562 * 20 19 17
22 22 C 1.50697 * 109.46919 * 179.97438 * 21 20 19
23 23 C 1.38821 * 120.75906 * 269.72285 * 22 21 20
24 24 C 1.38049 * 119.29166 * 179.75007 * 23 22 21
25 25 N 1.31967 * 120.83283 * 0.53314 * 24 23 22
26 26 C 1.32246 * 121.64741 * 359.71491 * 25 24 23
27 27 O 1.35682 * 119.68625 * 179.97438 * 26 25 24
28 28 C 1.38383 * 120.75434 * 89.99956 * 22 21 20
29 29 C 1.53778 * 113.61233 * 205.00041 * 10 9 7
30 30 H 0.96997 * 120.00422 * 359.97438 * 1 2 3
31 31 H 0.97002 * 119.99708 * 359.97438 * 9 7 2
32 32 H 1.09003 * 113.61309 * 25.42314 * 12 10 9
33 33 H 1.09000 * 113.66774 * 254.47065 * 12 10 9
34 34 H 1.09002 * 109.47398 * 34.13594 * 15 13 12
35 35 H 1.09001 * 109.47194 * 154.13774 * 15 13 12
36 36 H 0.97000 * 120.00420 * 0.02562 * 16 15 13
37 37 H 1.09002 * 109.47152 * 300.00160 * 19 17 16
38 38 H 1.09001 * 109.46980 * 60.00059 * 19 17 16
39 39 H 1.08999 * 109.46804 * 299.99988 * 21 20 19
40 40 H 1.08998 * 109.47480 * 59.99582 * 21 20 19
41 41 H 1.08003 * 120.35210 * 359.97438 * 23 22 21
42 42 H 1.07996 * 119.58912 * 180.24644 * 24 23 22
43 43 H 0.96696 * 113.99874 * 270.02316 * 27 26 25
44 44 H 1.07995 * 120.44766 * 359.97438 * 28 22 21
45 45 H 1.09000 * 113.61215 * 105.39106 * 29 10 9
46 46 H 1.09002 * 113.61764 * 334.48286 * 29 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4976 2.0464 -1.4000
5 1 1.4476 2.6526 0.7001
6 1 3.5477 1.4402 0.7001
7 6 2.0103 -1.2022 -0.0005
8 1 3.0903 -1.2021 -0.0010
9 7 1.3257 -2.3881 -0.0016
10 6 2.0582 -3.6568 -0.0027
11 1 3.0657 -3.5634 -0.4079
12 6 2.0031 -4.4055 1.3414
13 6 1.8499 -5.6986 0.5232
14 1 2.7997 -6.1646 0.2611
15 6 0.8480 -6.6877 1.1221
16 7 1.5227 -7.5226 2.1191
17 6 0.8324 -8.4722 2.7812
18 8 -0.3473 -8.6352 2.5519
19 6 1.5263 -9.3307 3.8072
20 8 0.5908 -10.2554 4.3657
21 6 1.1499 -11.1213 5.3556
22 6 0.0807 -12.0484 5.8737
23 6 -0.6948 -11.6956 6.9697
24 6 -1.6693 -12.5657 7.4157
25 7 -1.8627 -13.7274 6.8202
26 6 -1.1411 -14.1010 5.7769
27 8 -1.3734 -15.3047 5.1954
28 6 -0.1465 -13.2732 5.2711
29 6 1.2603 -4.8282 -0.5993
30 1 -0.4850 0.8400 0.0004
31 1 0.3557 -2.3881 -0.0016
32 1 1.1262 -4.1619 1.9413
33 1 2.9325 -4.3553 1.9086
34 1 0.0354 -6.1387 1.5979
35 1 0.4450 -7.3204 0.3313
36 1 2.4661 -7.3921 2.3028
37 1 2.3394 -9.8794 3.3319
38 1 1.9286 -8.6979 4.5983
39 1 1.9557 -11.7067 4.9129
40 1 1.5438 -10.5254 6.1789
41 1 -0.5398 -10.7489 7.4659
42 1 -2.2781 -12.2944 8.2654
43 1 -0.8524 -16.0288 5.5686
44 1 0.4410 -13.5813 4.4190
45 1 1.5910 -5.1188 -1.5964
46 1 0.1800 -4.7005 -0.5309
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001479303492.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:35:50
Heat of formation + Delta-G solvation = -81.950225 kcal
Electronic energy + Delta-G solvation = -26698.232444 eV
Core-core repulsion = 22588.225081 eV
Total energy + Delta-G solvation = -4110.007362 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.50399 -40.93417 -39.85189 -38.75591 -37.91540 -36.03880 -35.00687 -34.27010
-32.24352 -31.27001 -30.27154 -28.26815 -26.93825 -26.44347 -25.62478 -24.50181
-23.09691 -22.46810 -21.76004 -20.47337 -19.54854 -19.04144 -18.23616 -18.07819
-17.99144 -17.23946 -17.05759 -16.83970 -16.65184 -16.46206 -16.14680 -15.72086
-15.60889 -15.27376 -15.10709 -14.79072 -14.40577 -14.15226 -14.05074 -13.47389
-13.34804 -13.22255 -13.01303 -12.91139 -12.86287 -12.74683 -12.67966 -12.63700
-12.17484 -12.06411 -11.58381 -11.53810 -11.10650 -10.96672 -10.82064 -10.75639
-10.70074 -10.51084 -10.08603 -9.95072 -8.96704 -7.93714 -5.22155 -0.02448
0.03916 1.48139 1.49889 1.58190 1.59448 1.85617 2.52197 2.57653
2.69352 3.12067 3.38404 3.60413 3.68488 3.74990 3.77154 3.84152
3.96612 4.05131 4.05486 4.22165 4.26695 4.27369 4.35718 4.37195
4.43658 4.44680 4.56914 4.57833 4.73512 4.78265 4.84667 4.99144
5.00792 5.06833 5.23087 5.24320 5.36945 5.43883 5.54086 5.54579
5.75370 5.99410 6.28468 6.59258 6.59730 6.89864 7.27109 7.33859
8.12733 8.34033 9.29869
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.027541 B = 0.001432 C = 0.001409
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1016.421391 B =19544.979537 C =19867.055745
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.973 5.973
2 C -0.080 4.080
3 Si 0.974 3.026
4 H -0.288 1.288
5 H -0.299 1.299
6 H -0.266 1.266
7 C -0.242 4.242
8 H 0.081 0.919
9 N -0.731 5.731
10 C 0.142 3.858
11 H 0.083 0.917
12 C -0.152 4.152
13 C -0.092 4.092
14 H 0.127 0.873
15 C 0.138 3.862
16 N -0.708 5.708
17 C 0.502 3.498
18 O -0.585 6.585
19 C 0.049 3.951
20 O -0.395 6.395
21 C 0.098 3.902
22 C -0.041 4.041
23 C -0.162 4.162
24 C 0.112 3.888
25 N -0.533 5.533
26 C 0.290 3.710
27 O -0.496 6.496
28 C -0.171 4.171
29 C -0.140 4.140
30 H 0.250 0.750
31 H 0.371 0.629
32 H 0.053 0.947
33 H 0.072 0.928
34 H 0.042 0.958
35 H 0.062 0.938
36 H 0.420 0.580
37 H 0.120 0.880
38 H 0.116 0.884
39 H 0.091 0.909
40 H 0.095 0.905
41 H 0.165 0.835
42 H 0.187 0.813
43 H 0.419 0.581
44 H 0.155 0.845
45 H 0.078 0.922
46 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.148 -30.049 14.626 34.926
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.624 5.624
2 C -0.272 4.272
3 Si 0.803 3.197
4 H -0.215 1.215
5 H -0.226 1.226
6 H -0.191 1.191
7 C -0.374 4.374
8 H 0.099 0.901
9 N -0.368 5.368
10 C 0.032 3.968
11 H 0.101 0.899
12 C -0.193 4.193
13 C -0.111 4.111
14 H 0.144 0.856
15 C 0.014 3.986
16 N -0.362 5.362
17 C 0.289 3.711
18 O -0.464 6.464
19 C -0.030 4.030
20 O -0.315 6.315
21 C 0.023 3.977
22 C -0.049 4.049
23 C -0.181 4.181
24 C -0.044 4.044
25 N -0.253 5.253
26 C 0.112 3.888
27 O -0.306 6.306
28 C -0.192 4.192
29 C -0.179 4.179
30 H 0.058 0.942
31 H 0.202 0.798
32 H 0.072 0.928
33 H 0.091 0.909
34 H 0.061 0.939
35 H 0.080 0.920
36 H 0.258 0.742
37 H 0.137 0.863
38 H 0.134 0.866
39 H 0.109 0.891
40 H 0.113 0.887
41 H 0.183 0.817
42 H 0.204 0.796
43 H 0.280 0.720
44 H 0.173 0.827
45 H 0.097 0.903
46 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 8.280 -30.337 14.315 34.551
hybrid contribution 0.775 1.427 -0.091 1.626
sum 9.055 -28.910 14.224 33.468
Atomic orbital electron populations
1.69831 1.06784 1.25977 1.59801 1.25604 0.96337 1.01288 1.03969
0.85132 0.77761 0.79453 0.77381 1.21484 1.22587 1.19090 1.19759
0.91672 0.85364 1.40639 0.90119 1.42651 1.05339 1.01320 1.87518
1.22016 0.95642 0.83760 0.95352 0.89935 1.23738 1.01156 0.95959
0.98430 1.22465 0.99445 0.92857 0.96350 0.85552 1.21199 0.94964
0.91891 0.90503 1.45739 1.14642 1.35116 1.40696 1.21083 0.86935
0.80857 0.82242 1.90738 1.18448 1.70269 1.66953 1.22379 0.91778
0.92522 0.96305 1.88049 1.36758 1.49697 1.56972 1.21573 0.92985
0.91191 0.91991 1.20207 0.96708 0.93670 0.94335 1.22441 0.96202
1.01882 0.97615 1.23020 0.95595 0.87506 0.98305 1.67173 1.27602
1.20557 1.10006 1.19385 0.90939 0.88650 0.89852 1.84761 1.69792
1.16713 1.59301 1.22220 0.98848 0.95874 1.02250 1.23345 0.99817
0.96140 0.98629 0.94172 0.79765 0.92849 0.90885 0.93916 0.91964
0.74190 0.86269 0.86631 0.89081 0.88723 0.81749 0.79631 0.71995
0.82707 0.90314 0.91833
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -60.10 13.06 21.65 0.28 -59.82 16
2 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16
3 Si 0.97 45.72 29.55 68.60 2.03 47.75 16
4 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16
5 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16
6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16
7 C -0.24 -13.25 9.97 84.03 0.84 -12.42 16
8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16
9 N -0.73 -36.39 5.41 -320.17 -1.73 -38.12 16
10 C 0.14 5.16 4.48 45.58 0.20 5.37 16
11 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16
12 C -0.15 -4.52 7.45 31.18 0.23 -4.29 16
13 C -0.09 -2.06 3.75 -10.26 -0.04 -2.10 16
14 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16
15 C 0.14 3.30 5.50 86.38 0.47 3.77 16
16 N -0.71 -12.56 5.56 -463.05 -2.57 -15.13 16
17 C 0.50 11.18 7.91 87.66 0.69 11.87 16
18 O -0.58 -20.51 16.50 16.01 0.26 -20.25 16
19 C 0.05 0.58 6.42 71.24 0.46 1.04 16
20 O -0.40 -7.19 9.86 -129.94 -1.28 -8.47 16
21 C 0.10 0.92 6.11 71.24 0.44 1.36 16
22 C -0.04 -0.57 5.54 -19.69 -0.11 -0.68 16
23 C -0.16 -2.07 9.81 22.36 0.22 -1.85 16
24 C 0.11 1.66 11.18 84.63 0.95 2.61 16
25 N -0.53 -10.85 10.39 -308.94 -3.21 -14.06 16
26 C 0.29 5.42 7.75 84.80 0.66 6.08 16
27 O -0.50 -8.02 13.56 -90.00 -1.22 -9.24 16
28 C -0.17 -2.63 9.75 22.47 0.22 -2.41 16
29 C -0.14 -4.14 7.40 31.12 0.23 -3.91 16
30 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16
31 H 0.37 20.24 7.92 -92.71 -0.73 19.51 16
32 H 0.05 1.88 7.92 -2.39 -0.02 1.86 16
33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16
34 H 0.04 1.28 7.88 -2.39 -0.02 1.26 16
35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16
36 H 0.42 4.06 8.47 -92.71 -0.79 3.27 16
37 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16
38 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16
39 H 0.09 0.39 8.10 -2.39 -0.02 0.37 16
40 H 0.09 0.39 8.10 -2.39 -0.02 0.37 16
41 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16
42 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16
43 H 0.42 2.07 9.06 -74.06 -0.67 1.40 16
44 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16
45 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16
46 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16
Total: -1.00 -86.94 396.48 -2.68 -89.62
By element:
Atomic # 1 Polarization: 28.58 SS G_CDS: -1.17 Total: 27.41 kcal
Atomic # 6 Polarization: -5.61 SS G_CDS: 5.92 Total: 0.32 kcal
Atomic # 7 Polarization: -119.90 SS G_CDS: -7.23 Total: -127.13 kcal
Atomic # 8 Polarization: -35.72 SS G_CDS: -2.24 Total: -37.96 kcal
Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal
Total: -86.94 -2.68 -89.62 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001479303492.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.672 kcal
(2) G-P(sol) polarization free energy of solvation -86.941 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.269 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.681 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.622 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.950 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds