Wall clock time and date at job start Tue Mar 31 2020 18:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99952 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00039 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00055 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99885 * 3 2 1 7 7 C 1.38950 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99959 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00078 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.46946 * 180.02562 * 12 10 9 14 14 C 1.46903 * 110.99955 * 180.02562 * 13 12 10 15 15 H 1.09005 * 110.43336 * 36.09107 * 14 13 12 16 16 C 1.54266 * 110.48568 * 273.54649 * 14 13 12 17 17 C 1.53871 * 106.59881 * 217.71019 * 16 14 13 18 18 C 1.54271 * 106.59976 * 359.97438 * 17 16 14 19 19 H 1.08992 * 110.49070 * 264.93053 * 18 17 16 20 20 C 1.53006 * 110.48703 * 142.41865 * 18 17 16 21 21 N 1.46500 * 109.46806 * 66.45770 * 20 18 17 22 22 C 1.34779 * 119.99664 * 180.02562 * 21 20 18 23 23 O 1.21693 * 120.00318 * 359.97438 * 22 21 20 24 24 C 1.46659 * 119.99664 * 180.02562 * 22 21 20 25 25 C 1.36542 * 125.98537 * 180.02562 * 24 22 21 26 26 C 1.40365 * 106.70540 * 179.97438 * 25 24 22 27 27 C 1.35120 * 107.12024 * 359.97438 * 26 25 24 28 28 O 1.33931 * 108.76621 * 359.76198 * 27 26 25 29 29 C 1.54889 * 104.19334 * 23.61462 * 18 17 16 30 30 H 0.96996 * 120.00340 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00486 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47178 * 300.00469 * 12 10 9 33 33 H 1.09006 * 109.46629 * 60.00665 * 12 10 9 34 34 H 1.00902 * 111.00405 * 303.95328 * 13 12 10 35 35 H 1.08996 * 110.03383 * 336.99809 * 16 14 13 36 36 H 1.09000 * 110.03039 * 98.37865 * 16 14 13 37 37 H 1.09000 * 110.03262 * 119.28439 * 17 16 14 38 38 H 1.08996 * 110.03439 * 240.67190 * 17 16 14 39 39 H 1.08997 * 109.47067 * 186.46111 * 20 18 17 40 40 H 1.09004 * 109.47182 * 306.45857 * 20 18 17 41 41 H 0.96997 * 120.00018 * 359.97438 * 21 20 18 42 42 H 1.07996 * 126.64913 * 359.97438 * 25 24 22 43 43 H 1.08009 * 126.43758 * 180.02562 * 26 25 24 44 44 H 1.08001 * 125.62392 * 179.97438 * 27 26 25 45 45 H 1.09004 * 110.75362 * 203.74472 * 29 18 17 46 46 H 1.08993 * 110.76138 * 80.36970 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 1.4001 5 1 3.5457 1.4402 -0.7000 6 1 1.4456 2.6527 -0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0034 13 7 2.1982 -5.9794 0.0036 14 6 1.4979 -7.2708 0.0047 15 1 0.5906 -7.2122 -0.5967 16 6 1.1626 -7.7019 1.4474 17 6 1.3595 -9.2268 1.5076 18 6 1.8070 -9.6693 0.0990 19 1 0.9498 -10.0003 -0.4872 20 6 2.8513 -10.7834 0.1943 21 7 2.2316 -11.9870 0.7544 22 6 2.9662 -13.1029 0.9318 23 8 4.1442 -13.1110 0.6263 24 6 2.3457 -14.3079 1.4919 25 6 2.9715 -15.4992 1.7231 26 6 2.0061 -16.3644 2.2613 27 6 0.8481 -15.6720 2.3346 28 8 1.0580 -14.4316 1.8753 29 6 2.4274 -8.3926 -0.5209 30 1 -0.4850 -0.8400 -0.0004 31 1 0.3533 -2.3906 0.0016 32 1 0.6180 -4.9200 0.8940 33 1 0.6160 -4.9212 -0.8860 34 1 2.8325 -5.9132 -0.7783 35 1 1.8356 -7.2105 2.1500 36 1 0.1287 -7.4487 1.6820 37 1 2.1282 -9.4755 2.2392 38 1 0.4211 -9.7143 1.7718 39 1 3.2394 -11.0037 -0.8002 40 1 3.6684 -10.4614 0.8400 41 1 1.2928 -11.9804 0.9981 42 1 4.0084 -15.7309 1.5295 43 1 2.1602 -17.3905 2.5612 44 1 -0.0911 -16.0546 2.7058 45 1 2.3995 -8.4391 -1.6096 46 1 3.4473 -8.2468 -0.1653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479428952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:52 Heat of formation + Delta-G solvation = -66.002848 kcal Electronic energy + Delta-G solvation = -27225.329612 eV Core-core repulsion = 23116.013780 eV Total energy + Delta-G solvation = -4109.315832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.15294 -40.03048 -38.95170 -38.12068 -35.60405 -34.40216 -33.70136 -33.38099 -31.09151 -30.81377 -29.48720 -28.63460 -26.04918 -24.84917 -23.62464 -23.15405 -22.21863 -21.02232 -20.46876 -19.82027 -19.55123 -18.87177 -17.89041 -16.92241 -16.79724 -16.72612 -16.39874 -16.03780 -15.32551 -15.06239 -14.97273 -14.68552 -14.22356 -13.96062 -13.69194 -13.59520 -13.55502 -13.49931 -13.47659 -13.16889 -12.68199 -12.65708 -11.81196 -11.65354 -11.36066 -11.23593 -11.17383 -11.10670 -10.95356 -10.89442 -10.69934 -10.56640 -10.48819 -10.21262 -9.86248 -9.60092 -9.53926 -9.14979 -8.49875 -8.13393 -8.01846 -6.74780 -3.87813 0.58813 1.86614 2.18834 2.76206 2.77931 3.31786 3.35831 3.55138 3.85711 4.05839 4.16289 4.27474 4.32609 4.34642 4.40477 4.54947 4.65615 4.94123 4.98979 5.12181 5.13754 5.22775 5.24672 5.27413 5.30335 5.37993 5.39289 5.44490 5.55690 5.67437 5.68980 5.70146 5.81015 5.88530 5.89557 5.91873 5.99147 6.07855 6.15563 6.28685 6.31629 7.01458 7.20214 7.61888 7.64771 7.82323 8.09131 8.61082 8.80963 9.48591 9.88912 10.68799 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.042303 B = 0.001486 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.729142 B =18837.191020 C =19217.403630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.010 4.010 3 Si 1.094 2.906 4 H -0.284 1.284 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.382 4.382 8 H 0.099 0.901 9 N -0.576 5.576 10 C 0.443 3.557 11 O -0.576 6.576 12 C 0.051 3.949 13 N -0.661 5.661 14 C 0.082 3.918 15 H 0.047 0.953 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.103 4.103 19 H 0.082 0.918 20 C 0.126 3.874 21 N -0.717 5.717 22 C 0.601 3.399 23 O -0.519 6.519 24 C -0.080 4.080 25 C -0.120 4.120 26 C -0.225 4.225 27 C -0.006 4.006 28 O -0.165 6.165 29 C -0.116 4.116 30 H 0.261 0.739 31 H 0.375 0.625 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.350 0.650 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.406 0.594 42 H 0.161 0.839 43 H 0.157 0.843 44 H 0.211 0.789 45 H 0.069 0.931 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.487 -31.742 2.828 32.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.212 4.212 3 Si 0.920 3.080 4 H -0.211 1.211 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.512 4.512 8 H 0.117 0.883 9 N -0.215 5.215 10 C 0.229 3.771 11 O -0.460 6.460 12 C -0.082 4.082 13 N -0.294 5.294 14 C -0.028 4.028 15 H 0.065 0.935 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.122 4.122 19 H 0.100 0.900 20 C 0.003 3.997 21 N -0.367 5.367 22 C 0.387 3.613 23 O -0.397 6.397 24 C -0.132 4.132 25 C -0.141 4.141 26 C -0.244 4.244 27 C -0.076 4.076 28 O -0.060 6.060 29 C -0.154 4.154 30 H 0.072 0.928 31 H 0.208 0.792 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.170 0.830 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.241 0.759 42 H 0.178 0.822 43 H 0.175 0.825 44 H 0.228 0.772 45 H 0.088 0.912 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.098 -29.752 3.241 30.002 hybrid contribution -1.317 -2.040 -0.640 2.511 sum -3.415 -31.792 2.601 32.081 Atomic orbital electron populations 1.70871 1.06524 1.29382 1.47378 1.26508 0.96544 1.02627 0.95508 0.83089 0.74362 0.73394 0.77164 1.21096 1.20935 1.20670 1.20577 0.94709 0.83880 1.51989 0.88284 1.41945 1.08165 1.05578 1.65777 1.19762 0.88434 0.84492 0.84433 1.90530 1.13680 1.86928 1.54818 1.21706 0.94430 0.91065 1.00974 1.60177 1.18531 0.99554 1.51099 1.22370 0.95324 0.89011 0.96097 0.93512 1.22196 1.01512 0.94468 0.97363 1.22214 1.01105 0.96300 0.96029 1.22177 0.97857 0.94414 0.97741 0.90008 1.21550 0.95861 0.82885 0.99423 1.45910 1.14306 1.11937 1.64575 1.16547 0.85641 0.80962 0.78142 1.90909 1.14628 1.82994 1.51149 1.22118 0.82821 0.97948 1.10324 1.22018 1.01398 0.91449 0.99187 1.21899 0.92948 1.02164 1.07431 1.24448 1.00961 0.81838 1.00358 1.84063 1.27858 1.31970 1.62141 1.22606 1.00356 0.92517 0.99923 0.92768 0.79182 0.89756 0.94036 0.82960 0.90141 0.92247 0.91354 0.91998 0.90887 0.90538 0.75933 0.82159 0.82495 0.77242 0.91231 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.37 13.68 55.50 0.76 -24.61 16 2 C -0.01 -0.26 5.50 -17.47 -0.10 -0.36 16 3 Si 1.09 24.46 29.92 -169.99 -5.09 19.38 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.38 -10.85 9.68 -14.93 -0.14 -10.99 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.58 -14.61 5.28 -10.97 -0.06 -14.67 16 10 C 0.44 10.53 7.82 -10.98 -0.09 10.45 16 11 O -0.58 -15.89 15.78 5.55 0.09 -15.80 16 12 C 0.05 0.89 6.01 -4.98 -0.03 0.86 16 13 N -0.66 -10.43 5.92 -106.25 -0.63 -11.06 16 14 C 0.08 0.96 3.17 -66.06 -0.21 0.75 16 15 H 0.05 0.53 7.87 -51.93 -0.41 0.12 16 16 C -0.12 -1.27 6.46 -25.62 -0.17 -1.43 16 17 C -0.12 -0.98 6.05 -25.61 -0.15 -1.13 16 18 C -0.10 -0.79 2.93 -88.95 -0.26 -1.05 16 19 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 20 C 0.13 1.05 5.00 -4.04 -0.02 1.03 16 21 N -0.72 -5.78 5.39 -61.62 -0.33 -6.11 16 22 C 0.60 6.24 7.79 -12.86 -0.10 6.14 16 23 O -0.52 -7.09 16.86 5.20 0.09 -7.01 16 24 C -0.08 -0.71 7.13 -36.80 -0.26 -0.98 16 25 C -0.12 -0.95 10.62 -39.39 -0.42 -1.37 16 26 C -0.23 -1.25 10.87 -39.89 -0.43 -1.68 16 27 C -0.01 -0.03 12.08 29.62 0.36 0.33 16 28 O -0.16 -1.19 10.40 4.98 0.05 -1.14 16 29 C -0.12 -1.10 5.73 -24.75 -0.14 -1.24 16 30 H 0.26 7.05 6.78 -40.82 -0.28 6.77 16 31 H 0.38 8.76 6.73 -40.82 -0.27 8.49 16 32 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 33 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.35 5.73 8.17 -39.29 -0.32 5.41 16 35 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.60 7.78 -51.93 -0.40 0.19 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 41 H 0.41 2.50 8.08 -40.82 -0.33 2.17 16 42 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.16 0.49 8.06 -52.48 -0.42 0.07 16 44 H 0.21 0.14 8.06 -52.49 -0.42 -0.29 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 LS Contribution 389.17 15.07 5.86 5.86 Total: -1.00 -35.41 389.17 -8.08 -43.49 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -6.66 Total: 12.35 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.17 Total: -0.68 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.26 Total: -56.45 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: 0.23 Total: -23.95 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.09 Total: 19.38 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.41 -8.08 -43.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479428952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.510 kcal (2) G-P(sol) polarization free energy of solvation -35.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds