Wall clock time and date at job start Tue Mar 31 2020 18:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99952 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00039 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00055 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99885 * 3 2 1 7 7 C 1.38950 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99959 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00078 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.46946 * 180.02562 * 12 10 9 14 14 C 1.46903 * 110.99955 * 180.02562 * 13 12 10 15 15 H 1.09005 * 110.43336 * 36.09107 * 14 13 12 16 16 C 1.54266 * 110.48568 * 273.54649 * 14 13 12 17 17 C 1.53871 * 106.59881 * 217.71019 * 16 14 13 18 18 C 1.54271 * 106.59976 * 359.97438 * 17 16 14 19 19 H 1.08992 * 110.49070 * 264.93053 * 18 17 16 20 20 C 1.53006 * 110.48703 * 142.41865 * 18 17 16 21 21 N 1.46500 * 109.46806 * 66.45770 * 20 18 17 22 22 C 1.34779 * 119.99664 * 180.02562 * 21 20 18 23 23 O 1.21693 * 120.00318 * 359.97438 * 22 21 20 24 24 C 1.46659 * 119.99664 * 180.02562 * 22 21 20 25 25 C 1.36542 * 125.98537 * 180.02562 * 24 22 21 26 26 C 1.40365 * 106.70540 * 179.97438 * 25 24 22 27 27 C 1.35120 * 107.12024 * 359.97438 * 26 25 24 28 28 O 1.33931 * 108.76621 * 359.76198 * 27 26 25 29 29 C 1.54889 * 104.19334 * 23.61462 * 18 17 16 30 30 H 0.96996 * 120.00340 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00486 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47178 * 300.00469 * 12 10 9 33 33 H 1.09006 * 109.46629 * 60.00665 * 12 10 9 34 34 H 1.00902 * 111.00405 * 303.95328 * 13 12 10 35 35 H 1.08996 * 110.03383 * 336.99809 * 16 14 13 36 36 H 1.09000 * 110.03039 * 98.37865 * 16 14 13 37 37 H 1.09000 * 110.03262 * 119.28439 * 17 16 14 38 38 H 1.08996 * 110.03439 * 240.67190 * 17 16 14 39 39 H 1.08997 * 109.47067 * 186.46111 * 20 18 17 40 40 H 1.09004 * 109.47182 * 306.45857 * 20 18 17 41 41 H 0.96997 * 120.00018 * 359.97438 * 21 20 18 42 42 H 1.07996 * 126.64913 * 359.97438 * 25 24 22 43 43 H 1.08009 * 126.43758 * 180.02562 * 26 25 24 44 44 H 1.08001 * 125.62392 * 179.97438 * 27 26 25 45 45 H 1.09004 * 110.75362 * 203.74472 * 29 18 17 46 46 H 1.08993 * 110.76138 * 80.36970 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 1.4001 5 1 3.5457 1.4402 -0.7000 6 1 1.4456 2.6527 -0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0034 13 7 2.1982 -5.9794 0.0036 14 6 1.4979 -7.2708 0.0047 15 1 0.5906 -7.2122 -0.5967 16 6 1.1626 -7.7019 1.4474 17 6 1.3595 -9.2268 1.5076 18 6 1.8070 -9.6693 0.0990 19 1 0.9498 -10.0003 -0.4872 20 6 2.8513 -10.7834 0.1943 21 7 2.2316 -11.9870 0.7544 22 6 2.9662 -13.1029 0.9318 23 8 4.1442 -13.1110 0.6263 24 6 2.3457 -14.3079 1.4919 25 6 2.9715 -15.4992 1.7231 26 6 2.0061 -16.3644 2.2613 27 6 0.8481 -15.6720 2.3346 28 8 1.0580 -14.4316 1.8753 29 6 2.4274 -8.3926 -0.5209 30 1 -0.4850 -0.8400 -0.0004 31 1 0.3533 -2.3906 0.0016 32 1 0.6180 -4.9200 0.8940 33 1 0.6160 -4.9212 -0.8860 34 1 2.8325 -5.9132 -0.7783 35 1 1.8356 -7.2105 2.1500 36 1 0.1287 -7.4487 1.6820 37 1 2.1282 -9.4755 2.2392 38 1 0.4211 -9.7143 1.7718 39 1 3.2394 -11.0037 -0.8002 40 1 3.6684 -10.4614 0.8400 41 1 1.2928 -11.9804 0.9981 42 1 4.0084 -15.7309 1.5295 43 1 2.1602 -17.3905 2.5612 44 1 -0.0911 -16.0546 2.7058 45 1 2.3995 -8.4391 -1.6096 46 1 3.4473 -8.2468 -0.1653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479428952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:51 Heat of formation + Delta-G solvation = -92.983383 kcal Electronic energy + Delta-G solvation = -27226.499576 eV Core-core repulsion = 23116.013780 eV Total energy + Delta-G solvation = -4110.485796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.64609 -40.82107 -40.38188 -39.45128 -36.72305 -36.20217 -34.73087 -34.01288 -33.12579 -31.50089 -30.17512 -29.70418 -27.43940 -25.99746 -25.15582 -23.78651 -22.69882 -21.80394 -21.55551 -21.05266 -20.58044 -19.97145 -19.48507 -18.23819 -17.54746 -17.33867 -17.31331 -16.85642 -16.82235 -16.47618 -15.93806 -15.78746 -15.60924 -15.24817 -15.20097 -14.53797 -14.40272 -14.35770 -14.14344 -13.95772 -13.58618 -13.56184 -13.35417 -13.17441 -12.76700 -12.69341 -12.16000 -12.03387 -11.94224 -11.91141 -11.88623 -11.71360 -11.53138 -11.50022 -11.28631 -11.06562 -10.41349 -10.33645 -10.11467 -9.65368 -9.37792 -8.93630 -6.07550 0.00456 1.41617 1.51872 1.54647 1.63474 1.82126 2.00119 2.06134 2.17647 2.40211 2.81956 3.15974 3.36931 3.50200 3.56755 3.75798 3.93311 3.94752 4.11229 4.12426 4.20562 4.29944 4.34344 4.44352 4.50804 4.52885 4.60812 4.63536 4.66613 4.80802 4.90138 4.92199 4.95494 4.98714 5.16012 5.17168 5.23695 5.35029 5.38241 5.46440 5.60118 5.81510 5.94785 6.06887 6.37766 6.38631 6.57563 6.73907 6.95062 7.43417 7.91865 8.54234 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.042303 B = 0.001486 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.729142 B =18837.191020 C =19217.403630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.041 4.041 3 Si 1.136 2.864 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.412 4.412 8 H 0.072 0.928 9 N -0.586 5.586 10 C 0.440 3.560 11 O -0.619 6.619 12 C 0.067 3.933 13 N -0.678 5.678 14 C 0.080 3.920 15 H 0.062 0.938 16 C -0.117 4.117 17 C -0.112 4.112 18 C -0.087 4.087 19 H 0.104 0.896 20 C 0.129 3.871 21 N -0.703 5.703 22 C 0.598 3.402 23 O -0.565 6.565 24 C -0.110 4.110 25 C -0.129 4.129 26 C -0.236 4.236 27 C 0.012 3.988 28 O -0.169 6.169 29 C -0.114 4.114 30 H 0.260 0.740 31 H 0.385 0.615 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.344 0.656 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.417 0.583 42 H 0.156 0.844 43 H 0.181 0.819 44 H 0.255 0.745 45 H 0.081 0.919 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.822 -33.497 3.129 34.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.239 4.239 3 Si 0.956 3.044 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.541 4.541 8 H 0.090 0.910 9 N -0.226 5.226 10 C 0.228 3.772 11 O -0.504 6.504 12 C -0.065 4.065 13 N -0.310 5.310 14 C -0.029 4.029 15 H 0.080 0.920 16 C -0.155 4.155 17 C -0.150 4.150 18 C -0.106 4.106 19 H 0.122 0.878 20 C 0.006 3.994 21 N -0.354 5.354 22 C 0.385 3.615 23 O -0.446 6.446 24 C -0.161 4.161 25 C -0.150 4.150 26 C -0.255 4.255 27 C -0.057 4.057 28 O -0.065 6.065 29 C -0.152 4.152 30 H 0.071 0.929 31 H 0.219 0.781 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.164 0.836 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.254 0.746 42 H 0.173 0.827 43 H 0.199 0.801 44 H 0.271 0.729 45 H 0.100 0.900 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.499 -31.531 3.554 32.048 hybrid contribution -0.618 -1.637 -0.688 1.880 sum -5.117 -33.168 2.867 33.682 Atomic orbital electron populations 1.70940 1.06951 1.29522 1.48125 1.27815 0.96690 1.05271 0.94125 0.82594 0.73628 0.70199 0.78029 1.19641 1.20334 1.19628 1.20557 0.93902 0.85753 1.53928 0.91007 1.41995 1.08608 1.05491 1.66466 1.20936 0.88314 0.86062 0.81879 1.90500 1.15960 1.87894 1.56076 1.21561 0.94063 0.87988 1.02901 1.60191 1.18900 1.00777 1.51180 1.22513 0.95924 0.87368 0.97070 0.91978 1.22184 1.01282 0.95979 0.96091 1.22172 1.02076 0.94613 0.96154 1.22067 0.97957 0.93055 0.97519 0.87783 1.21454 0.95805 0.83222 0.98892 1.45791 1.14674 1.11207 1.63711 1.16783 0.85251 0.81770 0.77653 1.90873 1.16484 1.83899 1.53349 1.21819 0.83900 0.97731 1.12692 1.22268 1.01844 0.91952 0.98890 1.22225 0.92552 1.03165 1.07567 1.25384 1.02228 0.80467 0.97644 1.84054 1.26819 1.33278 1.62313 1.22577 0.99232 0.92665 1.00720 0.92949 0.78104 0.88053 0.91448 0.83643 0.92835 0.91340 0.92158 0.89645 0.91211 0.92139 0.74566 0.82661 0.80128 0.72892 0.90041 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.19 13.68 21.66 0.30 -50.90 16 2 C -0.04 -2.23 5.50 84.93 0.47 -1.76 16 3 Si 1.14 48.94 29.92 68.60 2.05 50.99 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.41 -23.85 9.68 84.04 0.81 -23.04 16 8 H 0.07 4.48 7.16 -2.91 -0.02 4.46 16 9 N -0.59 -30.07 5.28 -306.99 -1.62 -31.69 16 10 C 0.44 21.13 7.82 87.66 0.69 21.81 16 11 O -0.62 -35.03 15.78 -3.07 -0.05 -35.08 16 12 C 0.07 2.27 6.01 85.56 0.51 2.79 16 13 N -0.68 -20.98 5.92 -490.06 -2.90 -23.88 16 14 C 0.08 1.73 3.17 45.98 0.15 1.88 16 15 H 0.06 1.20 7.87 -2.38 -0.02 1.18 16 16 C -0.12 -2.35 6.46 31.32 0.20 -2.14 16 17 C -0.11 -1.63 6.05 31.32 0.19 -1.44 16 18 C -0.09 -1.15 2.93 -9.72 -0.03 -1.18 16 19 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 20 C 0.13 2.09 5.00 86.38 0.43 2.52 16 21 N -0.70 -10.80 5.39 -467.09 -2.52 -13.32 16 22 C 0.60 12.60 7.79 86.44 0.67 13.28 16 23 O -0.56 -16.24 16.86 -4.33 -0.07 -16.31 16 24 C -0.11 -1.91 7.13 24.07 0.17 -1.74 16 25 C -0.13 -2.00 10.62 22.39 0.24 -1.76 16 26 C -0.24 -2.10 10.87 22.07 0.24 -1.86 16 27 C 0.01 0.08 12.08 67.10 0.81 0.89 16 28 O -0.17 -2.10 10.40 -5.09 -0.05 -2.16 16 29 C -0.11 -2.02 5.73 31.88 0.18 -1.83 16 30 H 0.26 14.00 6.78 -92.71 -0.63 13.37 16 31 H 0.38 18.00 6.73 -92.71 -0.62 17.38 16 32 H 0.10 3.11 8.12 -2.39 -0.02 3.09 16 33 H 0.07 1.96 8.08 -2.38 -0.02 1.94 16 34 H 0.34 11.28 8.17 -89.69 -0.73 10.54 16 35 H 0.05 1.37 8.04 -2.39 -0.02 1.35 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 0.99 7.78 -2.39 -0.02 0.98 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 1.19 8.05 -2.39 -0.02 1.17 16 41 H 0.42 4.35 8.08 -92.71 -0.75 3.61 16 42 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 43 H 0.18 0.62 8.06 -2.91 -0.02 0.59 16 44 H 0.26 -0.92 8.06 -2.91 -0.02 -0.94 16 45 H 0.08 1.26 8.14 -2.38 -0.02 1.25 16 46 H 0.07 1.47 8.06 -2.39 -0.02 1.46 16 Total: -1.00 -79.55 389.17 -0.06 -79.61 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: -0.93 Total: 36.33 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 5.74 Total: 6.41 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -6.74 Total: -119.79 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -0.17 Total: -53.55 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.05 Total: 50.99 kcal Total: -79.55 -0.06 -79.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479428952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.374 kcal (2) G-P(sol) polarization free energy of solvation -79.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds