Wall clock time and date at job start Tue Mar 31 2020 18:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00051 * 2 1 4 4 H 1.48501 * 109.47098 * 85.35927 * 3 2 1 5 5 H 1.48493 * 109.47161 * 325.35982 * 3 2 1 6 6 H 1.48505 * 109.47060 * 205.35681 * 3 2 1 7 7 C 1.38813 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99726 * 197.84167 * 7 2 1 9 9 N 1.36932 * 120.00216 * 17.83429 * 7 2 1 10 10 C 1.46926 * 120.62923 * 27.51552 * 9 7 2 11 11 C 1.53188 * 108.77817 * 126.37040 * 10 9 7 12 12 C 1.53040 * 109.30921 * 54.63345 * 11 10 9 13 13 C 1.53042 * 109.54174 * 298.63667 * 12 11 10 14 14 H 1.09004 * 109.49537 * 301.41753 * 13 12 11 15 15 N 1.46505 * 109.49747 * 181.34974 * 13 12 11 16 16 C 1.34776 * 119.99353 * 155.00085 * 15 13 12 17 17 O 1.21283 * 120.00514 * 0.02562 * 16 15 13 18 18 C 1.50707 * 119.99670 * 180.02562 * 16 15 13 19 19 C 1.52995 * 109.46961 * 180.02562 * 18 16 15 20 20 N 1.46505 * 109.46644 * 179.97438 * 19 18 16 21 21 C 1.34782 * 119.99675 * 179.97438 * 20 19 18 22 22 O 1.21694 * 120.00074 * 0.02562 * 21 20 19 23 23 C 1.46659 * 119.99814 * 179.97438 * 21 20 19 24 24 C 1.36542 * 125.98682 * 179.71131 * 23 21 20 25 25 C 1.40367 * 106.70787 * 179.91026 * 24 23 21 26 26 C 1.35133 * 107.11426 * 0.35925 * 25 24 23 27 27 O 1.33937 * 108.76499 * 359.77565 * 26 25 24 28 28 C 1.46930 * 120.63214 * 207.24189 * 9 7 2 29 29 H 0.97004 * 120.00090 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.58614 * 246.15922 * 10 9 7 31 31 H 1.09001 * 109.58573 * 6.43899 * 10 9 7 32 32 H 1.09002 * 109.50053 * 174.58723 * 11 10 9 33 33 H 1.08998 * 109.49616 * 294.68710 * 11 10 9 34 34 H 1.09004 * 109.46163 * 58.65925 * 12 11 10 35 35 H 1.09004 * 109.45889 * 178.61328 * 12 11 10 36 36 H 0.96990 * 119.99888 * 335.00112 * 15 13 12 37 37 H 1.08999 * 109.46609 * 299.99991 * 18 16 15 38 38 H 1.09002 * 109.46893 * 59.99532 * 18 16 15 39 39 H 1.08999 * 109.47442 * 299.99469 * 19 18 16 40 40 H 1.08996 * 109.47342 * 60.00209 * 19 18 16 41 41 H 0.96994 * 120.00439 * 0.02562 * 20 19 18 42 42 H 1.07999 * 126.64480 * 0.05139 * 24 23 21 43 43 H 1.07994 * 126.44118 * 180.11288 * 25 24 23 44 44 H 1.07999 * 125.61732 * 179.77716 * 26 25 24 45 45 H 1.09000 * 109.58323 * 353.41367 * 28 9 7 46 46 H 1.08997 * 109.58717 * 113.84310 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3996 2.1031 1.3955 5 1 1.5001 2.6223 -0.7958 6 1 3.5934 1.4138 -0.5996 7 6 2.0102 -1.2022 -0.0005 8 1 3.0513 -1.2247 0.2860 9 7 1.3750 -2.3594 -0.3642 10 6 0.2349 -2.3282 -1.2905 11 6 0.5144 -3.2904 -2.4492 12 6 0.8311 -4.6789 -1.8888 13 6 2.0825 -4.6033 -1.0110 14 1 2.9188 -4.2285 -1.6012 15 7 2.4035 -5.9388 -0.5011 16 6 3.6692 -6.2392 -0.1489 17 8 4.5424 -5.4041 -0.2537 18 6 3.9996 -7.6131 0.3751 19 6 5.4929 -7.6900 0.6986 20 7 5.8139 -9.0254 1.2086 21 6 7.0797 -9.3260 1.5609 22 8 7.9558 -8.4880 1.4558 23 6 7.4009 -10.6626 2.0719 24 6 8.6360 -11.0987 2.4575 25 6 8.4814 -12.4294 2.8766 26 6 7.1766 -12.7457 2.7229 27 8 6.5288 -11.6785 2.2378 28 6 1.8242 -3.6565 0.1597 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6695 -2.6391 -0.7674 31 1 0.1047 -1.3169 -1.6758 32 1 -0.3632 -3.3495 -3.0930 33 1 1.3654 -2.9281 -3.0258 34 1 -0.0105 -5.0302 -1.2918 35 1 1.0063 -5.3715 -2.7121 36 1 1.7051 -6.6065 -0.4169 37 1 3.4219 -7.8057 1.2791 38 1 3.7520 -8.3592 -0.3801 39 1 6.0710 -7.4973 -0.2051 40 1 5.7400 -6.9441 1.4539 41 1 5.1157 -9.6935 1.2920 42 1 9.5536 -10.5293 2.4447 43 1 9.2597 -13.0795 3.2481 44 1 6.7298 -13.7016 2.9532 45 1 2.7440 -3.5219 0.7288 46 1 1.0521 -4.0779 0.8033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479914711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:29 Heat of formation + Delta-G solvation = -67.111943 kcal Electronic energy + Delta-G solvation = -27858.255018 eV Core-core repulsion = 23748.891092 eV Total energy + Delta-G solvation = -4109.363926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.63645 -41.12985 -40.49752 -39.01778 -36.49687 -35.90298 -34.17103 -34.04799 -32.54434 -32.34498 -30.87141 -29.87853 -27.26990 -25.92247 -23.97384 -23.85569 -23.10248 -22.65520 -21.65802 -21.31360 -20.83097 -19.59030 -18.73740 -18.16252 -17.47322 -17.31933 -17.12157 -16.88317 -16.67383 -16.57427 -15.94632 -15.70923 -15.34130 -15.21962 -14.98221 -14.72622 -14.35204 -14.18949 -14.07729 -14.01085 -13.93870 -13.55765 -13.40846 -13.05418 -12.95884 -12.75617 -12.61023 -12.47530 -12.13798 -11.97482 -11.76149 -11.63518 -11.57061 -11.30186 -11.05628 -10.86375 -10.62652 -10.40693 -10.08719 -9.65156 -8.70793 -7.92721 -5.36782 0.00375 1.41864 1.42680 1.43278 1.54095 1.55377 1.67237 1.97787 2.05029 2.39910 2.52630 3.21367 3.55155 3.70671 3.77452 3.87131 3.95172 4.02918 4.05079 4.13407 4.13937 4.27543 4.47990 4.50074 4.60574 4.61763 4.81669 4.82348 4.84767 4.92140 4.93079 4.96485 5.03077 5.13216 5.16049 5.19353 5.28660 5.39234 5.48246 5.58476 5.62071 5.76431 5.81435 6.35044 6.36723 6.64187 6.94963 7.11421 7.35610 7.81845 8.30579 9.12962 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.001875 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.523545 B =14931.198814 C =15849.962363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.044 4.044 3 Si 0.963 3.037 4 H -0.284 1.284 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.268 4.268 8 H 0.051 0.949 9 N -0.608 5.608 10 C 0.171 3.829 11 C -0.131 4.131 12 C -0.103 4.103 13 C 0.140 3.860 14 H 0.053 0.947 15 N -0.705 5.705 16 C 0.508 3.492 17 O -0.591 6.591 18 C -0.133 4.133 19 C 0.137 3.863 20 N -0.701 5.701 21 C 0.597 3.403 22 O -0.566 6.566 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.237 4.237 26 C 0.016 3.984 27 O -0.166 6.166 28 C 0.144 3.856 29 H 0.253 0.747 30 H 0.006 0.994 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.420 0.580 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.422 0.578 42 H 0.153 0.847 43 H 0.182 0.818 44 H 0.259 0.741 45 H 0.027 0.973 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.941 -32.656 1.879 33.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.240 4.240 3 Si 0.791 3.209 4 H -0.211 1.211 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.398 4.398 8 H 0.068 0.932 9 N -0.332 5.332 10 C 0.045 3.955 11 C -0.171 4.171 12 C -0.141 4.141 13 C 0.033 3.967 14 H 0.071 0.929 15 N -0.357 5.357 16 C 0.295 3.705 17 O -0.471 6.471 18 C -0.172 4.172 19 C 0.013 3.987 20 N -0.353 5.353 21 C 0.385 3.615 22 O -0.447 6.447 23 C -0.160 4.160 24 C -0.150 4.150 25 C -0.256 4.256 26 C -0.053 4.053 27 O -0.061 6.061 28 C 0.017 3.983 29 H 0.062 0.938 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.257 0.743 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.261 0.739 42 H 0.171 0.829 43 H 0.199 0.801 44 H 0.274 0.726 45 H 0.045 0.955 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 6.706 -31.277 1.645 32.030 hybrid contribution 0.222 1.070 0.375 1.155 sum 6.928 -30.207 2.020 31.058 Atomic orbital electron populations 1.70163 1.06282 1.25987 1.54869 1.25681 0.96123 1.01120 1.01046 0.85338 0.78112 0.79886 0.77591 1.21112 1.20888 1.20280 1.19371 0.92690 0.86593 1.41152 0.93161 1.44218 1.36374 1.01402 1.51201 1.20729 0.87597 0.98239 0.88896 1.22025 1.01303 0.95537 0.98227 1.21599 0.95943 0.97413 0.99098 1.21132 0.97886 0.82398 0.95264 0.92872 1.45842 1.09946 1.14365 1.65560 1.21113 0.82192 0.90427 0.76785 1.90781 1.48583 1.52291 1.55453 1.21735 0.95562 0.93931 1.06004 1.20922 0.95677 0.82910 0.99237 1.45643 1.09336 1.15471 1.64851 1.16831 0.83052 0.84434 0.77188 1.90901 1.48598 1.48682 1.56542 1.21663 0.90337 0.89691 1.14305 1.22276 0.97396 0.96851 0.98464 1.22224 0.98873 0.95953 1.08525 1.25425 0.92031 0.91485 0.96373 1.84045 1.37933 1.19652 1.64482 1.21149 0.96345 0.86469 0.94337 0.93829 0.97548 0.92853 0.89667 0.93650 0.90314 0.89297 0.74258 0.84695 0.83997 0.92263 0.92853 0.73934 0.82900 0.80100 0.72576 0.95466 0.95878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.52 11.20 21.65 0.24 -55.28 16 2 C -0.04 -2.55 4.90 84.86 0.42 -2.13 16 3 Si 0.96 47.05 29.59 68.60 2.03 49.08 16 4 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 6 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 7 C -0.27 -15.82 9.58 84.03 0.81 -15.01 16 8 H 0.05 3.05 7.89 -2.91 -0.02 3.03 16 9 N -0.61 -31.94 3.00 -699.92 -2.10 -34.04 16 10 C 0.17 8.14 5.32 86.36 0.46 8.60 16 11 C -0.13 -4.65 6.08 30.67 0.19 -4.46 16 12 C -0.10 -2.88 5.36 30.62 0.16 -2.71 16 13 C 0.14 4.76 2.59 44.92 0.12 4.88 16 14 H 0.05 2.20 7.58 -2.38 -0.02 2.18 16 15 N -0.70 -16.74 5.08 -442.82 -2.25 -18.99 16 16 C 0.51 13.38 7.80 87.66 0.68 14.07 16 17 O -0.59 -23.23 15.64 -3.04 -0.05 -23.27 16 18 C -0.13 -1.87 5.81 29.85 0.17 -1.70 16 19 C 0.14 2.95 4.96 86.38 0.43 3.38 16 20 N -0.70 -12.07 5.55 -467.10 -2.59 -14.67 16 21 C 0.60 14.18 7.79 86.44 0.67 14.85 16 22 O -0.57 -18.76 16.86 -4.33 -0.07 -18.83 16 23 C -0.11 -2.01 7.13 24.07 0.17 -1.84 16 24 C -0.13 -2.18 10.62 22.39 0.24 -1.94 16 25 C -0.24 -2.25 10.88 22.07 0.24 -2.01 16 26 C 0.02 0.10 12.08 67.10 0.81 0.91 16 27 O -0.17 -2.06 10.40 -5.06 -0.05 -2.11 16 28 C 0.14 6.34 6.06 86.22 0.52 6.87 16 29 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.05 2.91 6.03 -2.39 -0.01 2.90 16 32 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.42 5.99 8.60 -92.72 -0.80 5.19 16 37 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 40 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 41 H 0.42 4.00 8.23 -92.71 -0.76 3.24 16 42 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 43 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 44 H 0.26 -1.07 8.06 -2.91 -0.02 -1.10 16 45 H 0.03 1.33 7.93 -2.39 -0.02 1.31 16 46 H 0.02 0.98 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -87.33 385.69 0.69 -86.64 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -0.55 Total: 9.72 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: 6.09 Total: 21.75 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -6.70 Total: -122.98 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -0.17 Total: -44.21 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -87.33 0.69 -86.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479914711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.529 kcal (2) G-P(sol) polarization free energy of solvation -87.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds