Wall clock time and date at job start Tue Mar 31 2020 18:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99999 * 2 1 4 4 H 1.48500 * 109.46990 * 269.99664 * 3 2 1 5 5 H 1.48500 * 109.47219 * 29.99638 * 3 2 1 6 6 H 1.48501 * 109.47212 * 149.99888 * 3 2 1 7 7 C 1.38808 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99975 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00177 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47340 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47601 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00014 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00465 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99799 * 179.97438 * 13 12 11 16 16 H 1.09005 * 109.49913 * 299.93577 * 15 13 12 17 17 C 1.53038 * 109.52647 * 179.85766 * 15 13 12 18 18 C 1.53044 * 109.54121 * 178.66867 * 17 15 13 19 19 C 1.52759 * 109.38141 * 61.23636 * 18 17 15 20 20 N 1.46921 * 109.01308 * 305.58915 * 19 18 17 21 21 C 1.34771 * 120.63384 * 233.58760 * 20 19 18 22 22 O 1.21701 * 120.00331 * 183.68143 * 21 20 19 23 23 C 1.46660 * 120.00130 * 3.68377 * 21 20 19 24 24 C 1.36538 * 125.99088 * 173.08034 * 23 21 20 25 25 C 1.40365 * 106.70878 * 179.74889 * 24 23 21 26 26 C 1.35129 * 107.11543 * 0.37088 * 25 24 23 27 27 O 1.33939 * 108.76478 * 359.62288 * 26 25 24 28 28 C 1.46930 * 118.73448 * 53.30765 * 20 19 18 29 29 H 0.97000 * 119.99871 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99937 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47503 * 59.99608 * 10 9 7 32 32 H 1.09001 * 109.47130 * 299.99621 * 10 9 7 33 33 H 1.09002 * 109.47737 * 59.99233 * 11 10 9 34 34 H 1.09001 * 109.46729 * 299.99903 * 11 10 9 35 35 H 0.97002 * 119.99625 * 359.97438 * 12 11 10 36 36 H 1.09001 * 109.45781 * 298.68667 * 17 15 13 37 37 H 1.08998 * 109.46518 * 58.65960 * 17 15 13 38 38 H 1.09000 * 109.49870 * 181.31279 * 18 17 15 39 39 H 1.08994 * 109.49641 * 301.41312 * 18 17 15 40 40 H 1.08999 * 109.51074 * 185.70270 * 19 18 17 41 41 H 1.09002 * 109.43431 * 65.42472 * 19 18 17 42 42 H 1.08004 * 126.64579 * 359.95453 * 24 23 21 43 43 H 1.08000 * 126.44157 * 180.26882 * 25 24 23 44 44 H 1.07995 * 125.61858 * 179.88091 * 26 25 24 45 45 H 1.09000 * 109.58894 * 66.43957 * 28 20 19 46 46 H 1.09008 * 109.58744 * 186.85978 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 7 1.7964 -6.0885 0.0006 13 6 1.1225 -7.2556 0.0015 14 8 -0.0903 -7.2557 0.0024 15 6 1.8760 -8.5607 0.0003 16 1 2.5006 -8.6193 -0.8911 17 6 0.8826 -9.7248 0.0053 18 6 1.6471 -11.0502 -0.0295 19 6 2.5278 -11.1602 1.2138 20 7 3.3856 -9.9705 1.2995 21 6 4.7225 -10.0948 1.4160 22 8 5.4161 -9.1043 1.5535 23 6 5.3416 -11.4238 1.3771 24 6 6.6816 -11.6842 1.3499 25 6 6.8209 -13.0807 1.3231 26 6 5.5753 -13.6047 1.3266 27 8 4.6867 -12.6032 1.3624 28 6 2.7588 -8.6426 1.2495 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.6848 -3.7145 0.8904 32 1 2.6847 -3.7145 -0.8895 33 1 0.4367 -4.7622 -0.8885 34 1 0.4376 -4.7617 0.8914 35 1 2.7664 -6.0884 -0.0005 36 1 0.2749 -9.6798 0.9091 37 1 0.2370 -9.6552 -0.8702 38 1 0.9387 -11.8784 -0.0494 39 1 2.2739 -11.0854 -0.9205 40 1 3.1481 -12.0536 1.1427 41 1 1.8971 -11.2205 2.1008 42 1 7.4799 -10.9567 1.3523 43 1 7.7490 -13.6326 1.3018 44 1 5.3359 -14.6576 1.3081 45 1 2.1473 -8.4934 2.1395 46 1 3.5315 -7.8753 1.2018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480608455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:33 Heat of formation + Delta-G solvation = -32.821906 kcal Electronic energy + Delta-G solvation = -28312.557864 eV Core-core repulsion = 24204.680865 eV Total energy + Delta-G solvation = -4107.876999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.24150 -40.69953 -39.47587 -37.53495 -35.70231 -33.89964 -33.82953 -33.18007 -32.06683 -31.06162 -30.25328 -27.74754 -26.16808 -24.84554 -23.41814 -23.08966 -22.25838 -21.64665 -21.32904 -20.42592 -19.82138 -18.25400 -17.38433 -17.18394 -16.91506 -16.69726 -16.42427 -15.73929 -15.46792 -15.11790 -14.81093 -14.68638 -14.54186 -14.07138 -13.88046 -13.69401 -13.57689 -13.35217 -13.28554 -13.16405 -13.09544 -12.93230 -12.62764 -11.89242 -11.40041 -11.34032 -11.17595 -11.09010 -11.01564 -10.80702 -10.78586 -10.65490 -10.54463 -10.11224 -9.88044 -9.68334 -9.32377 -9.02619 -8.97931 -8.83031 -6.98027 -5.78266 -3.08865 0.59612 1.88685 2.04612 2.48223 2.72339 2.76876 3.22214 3.43823 3.48927 3.50801 3.93670 4.33404 4.34460 4.44469 4.51089 4.51979 4.58588 4.60299 4.79120 4.90878 5.02123 5.13506 5.21996 5.27224 5.31100 5.38926 5.45712 5.51506 5.53570 5.56490 5.63469 5.78046 5.83194 5.83874 5.96919 6.00284 6.03978 6.15844 6.35265 6.48409 6.71925 6.74539 6.85252 7.57262 7.58952 7.67865 8.26303 8.39415 9.50700 10.05352 10.40172 11.44295 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019034 B = 0.002012 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.700152 B =13909.778989 C =15228.943043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.144 3.856 11 C 0.110 3.890 12 N -0.721 5.721 13 C 0.518 3.482 14 O -0.536 6.536 15 C -0.122 4.122 16 H 0.102 0.898 17 C -0.101 4.101 18 C -0.134 4.134 19 C 0.087 3.913 20 N -0.601 5.601 21 C 0.602 3.398 22 O -0.516 6.516 23 C -0.077 4.077 24 C -0.116 4.116 25 C -0.222 4.222 26 C -0.016 4.016 27 O -0.158 6.158 28 C 0.122 3.878 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.025 0.975 32 H 0.024 0.976 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.401 0.599 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.161 0.839 43 H 0.157 0.843 44 H 0.209 0.791 45 H 0.080 0.920 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.973 -34.284 1.976 35.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.016 3.984 11 C -0.013 4.013 12 N -0.372 5.372 13 C 0.302 3.698 14 O -0.413 6.413 15 C -0.144 4.144 16 H 0.120 0.880 17 C -0.139 4.139 18 C -0.172 4.172 19 C -0.035 4.035 20 N -0.333 5.333 21 C 0.390 3.610 22 O -0.393 6.393 23 C -0.129 4.129 24 C -0.137 4.137 25 C -0.241 4.241 26 C -0.085 4.085 27 O -0.055 6.055 28 C -0.001 4.001 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.235 0.765 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.093 0.907 42 H 0.179 0.821 43 H 0.174 0.826 44 H 0.226 0.774 45 H 0.099 0.901 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.248 -33.593 2.074 34.904 hybrid contribution 0.814 0.801 -0.087 1.146 sum 10.063 -32.792 1.987 34.358 Atomic orbital electron populations 1.69666 1.05141 1.25815 1.57280 1.24780 0.95578 0.97826 1.02714 0.86143 0.78628 0.83581 0.77535 1.21645 1.21699 1.20686 1.19202 0.91063 0.83855 1.43314 0.91007 1.42184 1.05983 0.99570 1.89708 1.20764 0.93490 0.85667 0.98516 1.21598 0.95454 0.81686 1.02587 1.46014 1.10568 1.06082 1.74580 1.20260 0.88060 0.84943 0.76538 1.90719 1.13755 1.87500 1.49320 1.21728 0.98253 0.93973 1.00472 0.88005 1.21361 0.96702 0.91534 1.04315 1.21873 0.98918 0.98405 0.97978 1.22337 0.94148 0.88019 0.98976 1.47946 1.05504 1.07942 1.71912 1.16716 0.81627 0.85600 0.77057 1.90916 1.61898 1.36365 1.50164 1.22028 0.91859 0.84730 1.14250 1.22019 0.95231 0.96562 0.99884 1.21881 0.98908 0.94207 1.09137 1.24602 0.87999 0.93530 1.02375 1.84185 1.35887 1.14348 1.71039 1.21619 0.96835 0.84458 0.97173 0.93388 0.78022 0.95692 0.95777 0.91249 0.91193 0.76526 0.90662 0.90364 0.89870 0.91315 0.86952 0.90680 0.82126 0.82579 0.77424 0.90128 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.73 -18.76 5.60 -59.91 -0.34 -19.10 16 10 C 0.14 2.86 6.37 -4.05 -0.03 2.84 16 11 C 0.11 1.90 5.79 -4.04 -0.02 1.88 16 12 N -0.72 -9.82 5.46 -60.30 -0.33 -10.15 16 13 C 0.52 7.03 7.16 -10.99 -0.08 6.96 16 14 O -0.54 -9.36 15.98 5.56 0.09 -9.27 16 15 C -0.12 -1.19 2.67 -91.66 -0.25 -1.44 16 16 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 17 C -0.10 -0.89 4.46 -26.69 -0.12 -1.01 16 18 C -0.13 -0.84 6.07 -26.83 -0.16 -1.00 16 19 C 0.09 0.58 6.29 -3.94 -0.02 0.56 16 20 N -0.60 -5.48 2.98 -174.58 -0.52 -6.00 16 21 C 0.60 6.54 7.66 -12.86 -0.10 6.44 16 22 O -0.52 -7.19 16.30 5.19 0.08 -7.11 16 23 C -0.08 -0.69 6.85 -36.80 -0.25 -0.94 16 24 C -0.12 -0.93 10.63 -39.40 -0.42 -1.35 16 25 C -0.22 -1.21 10.87 -39.89 -0.43 -1.64 16 26 C -0.02 -0.07 12.08 29.63 0.36 0.29 16 27 O -0.16 -1.06 7.07 4.98 0.04 -1.02 16 28 C 0.12 1.17 5.56 -3.71 -0.02 1.15 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.39 10.47 7.67 -40.82 -0.31 10.16 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.40 4.53 8.01 -40.82 -0.33 4.20 16 36 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 37 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 0.69 3.76 -55.40 -0.21 0.48 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 43 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.21 0.06 8.06 -52.49 -0.42 -0.36 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.10 1.06 6.62 -51.92 -0.34 0.71 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -35.69 381.13 -7.98 -43.67 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.65 Total: 8.22 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -1.79 Total: 5.23 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: -0.46 Total: -63.02 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.21 Total: -17.40 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.69 -7.98 -43.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480608455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.849 kcal (2) G-P(sol) polarization free energy of solvation -35.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds