Wall clock time and date at job start Tue Mar 31 2020 18:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99999 * 2 1 4 4 H 1.48500 * 109.46990 * 269.99664 * 3 2 1 5 5 H 1.48500 * 109.47219 * 29.99638 * 3 2 1 6 6 H 1.48501 * 109.47212 * 149.99888 * 3 2 1 7 7 C 1.38808 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99975 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00177 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47340 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47601 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00014 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00465 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99799 * 179.97438 * 13 12 11 16 16 H 1.09005 * 109.49913 * 299.93577 * 15 13 12 17 17 C 1.53038 * 109.52647 * 179.85766 * 15 13 12 18 18 C 1.53044 * 109.54121 * 178.66867 * 17 15 13 19 19 C 1.52759 * 109.38141 * 61.23636 * 18 17 15 20 20 N 1.46921 * 109.01308 * 305.58915 * 19 18 17 21 21 C 1.34771 * 120.63384 * 233.58760 * 20 19 18 22 22 O 1.21701 * 120.00331 * 183.68143 * 21 20 19 23 23 C 1.46660 * 120.00130 * 3.68377 * 21 20 19 24 24 C 1.36538 * 125.99088 * 173.08034 * 23 21 20 25 25 C 1.40365 * 106.70878 * 179.74889 * 24 23 21 26 26 C 1.35129 * 107.11543 * 0.37088 * 25 24 23 27 27 O 1.33939 * 108.76478 * 359.62288 * 26 25 24 28 28 C 1.46930 * 118.73448 * 53.30765 * 20 19 18 29 29 H 0.97000 * 119.99871 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99937 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47503 * 59.99608 * 10 9 7 32 32 H 1.09001 * 109.47130 * 299.99621 * 10 9 7 33 33 H 1.09002 * 109.47737 * 59.99233 * 11 10 9 34 34 H 1.09001 * 109.46729 * 299.99903 * 11 10 9 35 35 H 0.97002 * 119.99625 * 359.97438 * 12 11 10 36 36 H 1.09001 * 109.45781 * 298.68667 * 17 15 13 37 37 H 1.08998 * 109.46518 * 58.65960 * 17 15 13 38 38 H 1.09000 * 109.49870 * 181.31279 * 18 17 15 39 39 H 1.08994 * 109.49641 * 301.41312 * 18 17 15 40 40 H 1.08999 * 109.51074 * 185.70270 * 19 18 17 41 41 H 1.09002 * 109.43431 * 65.42472 * 19 18 17 42 42 H 1.08004 * 126.64579 * 359.95453 * 24 23 21 43 43 H 1.08000 * 126.44157 * 180.26882 * 25 24 23 44 44 H 1.07995 * 125.61858 * 179.88091 * 26 25 24 45 45 H 1.09000 * 109.58894 * 66.43957 * 28 20 19 46 46 H 1.09008 * 109.58744 * 186.85978 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 7 1.7964 -6.0885 0.0006 13 6 1.1225 -7.2556 0.0015 14 8 -0.0903 -7.2557 0.0024 15 6 1.8760 -8.5607 0.0003 16 1 2.5006 -8.6193 -0.8911 17 6 0.8826 -9.7248 0.0053 18 6 1.6471 -11.0502 -0.0295 19 6 2.5278 -11.1602 1.2138 20 7 3.3856 -9.9705 1.2995 21 6 4.7225 -10.0948 1.4160 22 8 5.4161 -9.1043 1.5535 23 6 5.3416 -11.4238 1.3771 24 6 6.6816 -11.6842 1.3499 25 6 6.8209 -13.0807 1.3231 26 6 5.5753 -13.6047 1.3266 27 8 4.6867 -12.6032 1.3624 28 6 2.7588 -8.6426 1.2495 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.6848 -3.7145 0.8904 32 1 2.6847 -3.7145 -0.8895 33 1 0.4367 -4.7622 -0.8885 34 1 0.4376 -4.7617 0.8914 35 1 2.7664 -6.0884 -0.0005 36 1 0.2749 -9.6798 0.9091 37 1 0.2370 -9.6552 -0.8702 38 1 0.9387 -11.8784 -0.0494 39 1 2.2739 -11.0854 -0.9205 40 1 3.1481 -12.0536 1.1427 41 1 1.8971 -11.2205 2.1008 42 1 7.4799 -10.9567 1.3523 43 1 7.7490 -13.6326 1.3018 44 1 5.3359 -14.6576 1.3081 45 1 2.1473 -8.4934 2.1395 46 1 3.5315 -7.8753 1.2018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480608455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:32 Heat of formation + Delta-G solvation = -58.862360 kcal Electronic energy + Delta-G solvation = -28313.687062 eV Core-core repulsion = 24204.680865 eV Total energy + Delta-G solvation = -4109.006198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.72579 -41.58712 -40.48792 -38.38376 -37.32023 -35.55627 -34.46079 -33.86749 -33.30255 -32.48141 -30.84719 -29.38768 -26.85696 -26.10650 -24.95580 -23.71495 -23.14004 -22.72132 -22.25920 -21.24567 -20.65743 -19.36822 -18.92423 -18.00155 -17.72033 -17.39041 -17.26191 -16.90706 -16.59674 -16.46269 -15.99959 -15.74262 -15.42057 -15.31945 -15.05693 -14.81395 -14.70962 -14.51142 -14.20381 -14.09667 -13.93301 -13.57099 -13.38624 -13.10529 -13.05790 -12.70222 -12.57159 -12.54290 -12.10740 -12.03832 -11.88751 -11.80989 -11.73247 -11.42122 -11.03929 -11.01103 -10.94351 -10.20278 -10.00004 -9.57022 -9.08504 -7.98497 -5.29984 0.01744 1.35019 1.44933 1.47155 1.49540 1.58007 1.58636 1.95205 2.06844 2.09974 2.56396 3.35366 3.35489 3.52787 3.67455 3.71278 3.93245 3.97583 3.98631 4.09216 4.13617 4.13959 4.19491 4.23745 4.39692 4.49439 4.55582 4.60878 4.64620 4.79502 4.82531 4.90745 4.95994 4.99891 5.09356 5.10361 5.17707 5.30459 5.35327 5.36780 5.47188 5.48425 5.86658 6.18692 6.22301 6.44380 6.83481 7.13124 7.28633 7.99891 8.23478 9.24972 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019034 B = 0.002012 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.700152 B =13909.778989 C =15228.943043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.980 3.020 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.250 4.250 8 H 0.081 0.919 9 N -0.746 5.746 10 C 0.147 3.853 11 C 0.128 3.872 12 N -0.712 5.712 13 C 0.519 3.481 14 O -0.575 6.575 15 C -0.108 4.108 16 H 0.116 0.884 17 C -0.100 4.100 18 C -0.123 4.123 19 C 0.084 3.916 20 N -0.597 5.597 21 C 0.597 3.403 22 O -0.561 6.561 23 C -0.107 4.107 24 C -0.124 4.124 25 C -0.235 4.235 26 C 0.007 3.993 27 O -0.158 6.158 28 C 0.124 3.876 29 H 0.253 0.747 30 H 0.375 0.625 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.414 0.586 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.084 0.916 42 H 0.154 0.846 43 H 0.179 0.821 44 H 0.255 0.745 45 H 0.079 0.921 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.475 -37.139 1.841 38.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.269 4.269 3 Si 0.808 3.192 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.381 4.381 8 H 0.099 0.901 9 N -0.389 5.389 10 C 0.021 3.979 11 C 0.003 3.997 12 N -0.365 5.365 13 C 0.305 3.695 14 O -0.454 6.454 15 C -0.130 4.130 16 H 0.133 0.867 17 C -0.138 4.138 18 C -0.161 4.161 19 C -0.037 4.037 20 N -0.328 5.328 21 C 0.388 3.612 22 O -0.442 6.442 23 C -0.158 4.158 24 C -0.145 4.145 25 C -0.254 4.254 26 C -0.061 4.061 27 O -0.055 6.055 28 C 0.001 3.999 29 H 0.061 0.939 30 H 0.206 0.794 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.251 0.749 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.090 0.910 40 H 0.142 0.858 41 H 0.102 0.898 42 H 0.172 0.828 43 H 0.197 0.803 44 H 0.271 0.729 45 H 0.098 0.902 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.792 -36.509 1.935 38.120 hybrid contribution 0.391 1.512 -0.037 1.562 sum 11.183 -34.997 1.899 36.790 Atomic orbital electron populations 1.69832 1.06759 1.26306 1.59036 1.25674 0.96487 1.01449 1.03287 0.85053 0.77671 0.78959 0.77515 1.21216 1.22139 1.19199 1.19642 0.91688 0.84920 1.41879 0.90094 1.42402 1.05743 1.01009 1.89773 1.20848 0.93671 0.84300 0.99119 1.21160 0.94698 0.82525 1.01299 1.45875 1.11148 1.05006 1.74425 1.20911 0.87721 0.85800 0.75049 1.90704 1.15651 1.88076 1.50999 1.21664 0.98206 0.91980 1.01124 0.86651 1.21370 0.96488 0.92405 1.03559 1.21829 0.98956 0.97503 0.97787 1.22544 0.94093 0.87403 0.99622 1.48008 1.05372 1.08311 1.71142 1.17004 0.81804 0.86069 0.76372 1.90876 1.62887 1.37974 1.52435 1.21642 0.92088 0.84760 1.17296 1.22243 0.94919 0.98107 0.99220 1.22189 1.00573 0.92969 1.09669 1.25527 0.87217 0.94610 0.98738 1.84139 1.36253 1.14058 1.71074 1.21511 0.96452 0.85034 0.96934 0.93862 0.79372 0.94716 0.94656 0.92599 0.92572 0.74939 0.91462 0.91166 0.87470 0.91028 0.85815 0.89796 0.82837 0.80348 0.72917 0.90242 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 3 Si 0.98 46.57 29.55 68.60 2.03 48.60 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 9 N -0.75 -38.82 5.60 -343.47 -1.92 -40.74 16 10 C 0.15 5.85 6.37 86.38 0.55 6.40 16 11 C 0.13 4.48 5.79 86.38 0.50 4.98 16 12 N -0.71 -19.31 5.46 -463.07 -2.53 -21.84 16 13 C 0.52 14.09 7.16 87.66 0.63 14.72 16 14 O -0.58 -20.39 15.98 -3.02 -0.05 -20.44 16 15 C -0.11 -2.03 2.67 -11.46 -0.03 -2.06 16 16 H 0.12 1.92 8.14 -2.38 -0.02 1.90 16 17 C -0.10 -1.64 4.46 30.62 0.14 -1.50 16 18 C -0.12 -1.25 6.07 30.53 0.19 -1.06 16 19 C 0.08 0.95 6.29 86.22 0.54 1.49 16 20 N -0.60 -10.45 2.98 -824.46 -2.46 -12.91 16 21 C 0.60 12.99 7.66 86.44 0.66 13.65 16 22 O -0.56 -16.20 16.30 -4.35 -0.07 -16.27 16 23 C -0.11 -1.82 6.85 24.07 0.17 -1.65 16 24 C -0.12 -1.89 10.63 22.39 0.24 -1.65 16 25 C -0.24 -1.93 10.87 22.07 0.24 -1.69 16 26 C 0.01 0.04 12.08 67.10 0.81 0.85 16 27 O -0.16 -1.71 7.07 -5.10 -0.04 -1.75 16 28 C 0.12 2.35 5.56 86.36 0.48 2.83 16 29 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 30 H 0.37 20.92 7.67 -92.71 -0.71 20.20 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.41 9.11 8.01 -92.71 -0.74 8.37 16 36 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 37 H 0.07 1.29 8.07 -2.39 -0.02 1.27 16 38 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.13 1.19 3.76 -57.39 -0.22 0.97 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 43 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 44 H 0.26 -1.29 8.06 -2.91 -0.02 -1.31 16 45 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.09 1.96 6.62 -2.38 -0.02 1.94 16 Total: -1.00 -78.97 381.13 1.02 -77.96 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -0.64 Total: 29.54 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 6.41 Total: 18.00 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -6.63 Total: -135.64 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.16 Total: -38.46 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -78.97 1.02 -77.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480608455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.093 kcal (2) G-P(sol) polarization free energy of solvation -78.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds