Wall clock time and date at job start Tue Mar 31 2020 18:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99950 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99943 * 3 2 1 7 7 C 1.38946 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00006 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00384 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00039 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00386 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.46774 * 180.02562 * 12 10 9 14 14 C 1.46912 * 110.99636 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.46707 * 179.97438 * 14 13 12 16 16 H 1.09000 * 110.01386 * 54.30445 * 15 14 13 17 17 C 1.54263 * 110.03432 * 292.90927 * 15 14 13 18 18 C 1.54967 * 104.15908 * 217.14286 * 17 15 14 19 19 C 1.54888 * 102.77835 * 37.88689 * 18 17 15 20 20 C 1.53876 * 110.02563 * 175.69036 * 15 14 13 21 21 H 1.08999 * 110.03458 * 0.02562 * 20 15 14 22 22 N 1.46500 * 110.03250 * 238.56674 * 20 15 14 23 23 C 1.34777 * 119.99733 * 155.00013 * 22 20 15 24 24 O 1.21687 * 120.00317 * 0.02562 * 23 22 20 25 25 C 1.46662 * 119.99488 * 180.02562 * 23 22 20 26 26 C 1.36545 * 125.98351 * 180.02562 * 25 23 22 27 27 C 1.40364 * 106.70762 * 179.97438 * 26 25 23 28 28 C 1.35135 * 107.11622 * 0.02562 * 27 26 25 29 29 O 1.33935 * 108.76542 * 359.76673 * 28 27 26 30 30 H 0.96993 * 119.99996 * 180.02562 * 1 2 3 31 31 H 0.96992 * 119.99458 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46980 * 300.00161 * 12 10 9 33 33 H 1.08996 * 109.46805 * 60.00181 * 12 10 9 34 34 H 1.00901 * 111.00112 * 303.94908 * 13 12 10 35 35 H 1.08996 * 109.46654 * 299.99974 * 14 13 12 36 36 H 1.09004 * 109.46607 * 60.00026 * 14 13 12 37 37 H 1.09008 * 110.48535 * 335.78330 * 17 15 14 38 38 H 1.08995 * 110.48722 * 98.42873 * 17 15 14 39 39 H 1.09008 * 110.71523 * 279.57315 * 18 17 15 40 40 H 1.08999 * 110.92311 * 156.30026 * 18 17 15 41 41 H 1.09001 * 110.48516 * 203.40888 * 19 18 17 42 42 H 1.09001 * 110.59973 * 80.82076 * 19 18 17 43 43 H 0.96996 * 120.00187 * 335.00794 * 22 20 15 44 44 H 1.08003 * 126.64652 * 359.97438 * 26 25 23 45 45 H 1.08002 * 126.44637 * 179.97438 * 27 26 25 46 46 H 1.07997 * 125.62058 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1019 1.6964 -1.2125 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2437 -4.8630 0.0011 13 7 2.1984 -5.9794 0.0016 14 6 1.4980 -7.2709 0.0028 15 6 2.5230 -8.4068 0.0027 16 1 3.2172 -8.2830 0.8338 17 6 3.2949 -8.4219 -1.3329 18 6 3.4994 -9.9280 -1.6355 19 6 2.1660 -10.5569 -1.1607 20 6 1.8058 -9.7638 0.1125 21 1 0.7275 -9.6130 0.1655 22 7 2.2720 -10.4831 1.3006 23 6 1.4817 -11.4071 1.8822 24 8 0.3812 -11.6442 1.4202 25 6 1.9483 -12.1267 3.0719 26 6 1.2528 -13.0825 3.7555 27 6 2.0732 -13.4973 4.8162 28 6 3.2189 -12.7853 4.7348 29 8 3.1417 -11.9639 3.6797 30 1 -0.4850 -0.8400 0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6174 -4.9205 0.8914 33 1 0.6168 -4.9209 -0.8886 34 1 2.8332 -5.9128 -0.7798 35 1 0.8734 -7.3446 0.8931 36 1 0.8728 -7.3459 -0.8870 37 1 2.7051 -7.9516 -2.1197 38 1 4.2562 -7.9200 -1.2236 39 1 4.3389 -10.3254 -1.0648 40 1 3.6466 -10.0941 -2.7026 41 1 2.3043 -11.6124 -0.9262 42 1 1.3925 -10.4336 -1.9186 43 1 3.1493 -10.2943 1.6687 44 1 0.2631 -13.4483 3.5248 45 1 1.8336 -14.2445 5.5583 46 1 4.0600 -12.8681 5.4072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482667248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:36 Heat of formation + Delta-G solvation = -64.560801 kcal Electronic energy + Delta-G solvation = -27856.908966 eV Core-core repulsion = 23747.655665 eV Total energy + Delta-G solvation = -4109.253300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.06819 -40.29894 -38.65723 -38.13920 -35.37011 -34.23430 -33.90705 -33.34658 -31.12534 -30.50774 -30.12972 -28.01395 -26.53714 -24.46571 -23.69656 -22.74300 -22.16471 -21.25147 -20.40165 -20.13717 -19.63664 -18.64464 -17.89841 -17.02526 -16.71278 -16.67532 -16.37733 -15.60872 -15.47474 -15.15408 -14.76979 -14.52834 -14.24637 -13.94306 -13.86565 -13.55242 -13.50922 -13.40820 -13.15795 -13.10302 -12.85213 -12.29820 -11.94107 -11.74028 -11.56468 -11.29009 -11.20538 -11.05590 -10.94278 -10.85235 -10.76545 -10.54254 -10.48389 -10.20215 -9.86174 -9.54189 -9.49122 -9.06675 -8.52161 -8.13192 -8.02438 -6.74815 -3.87964 0.67145 1.94571 2.27687 2.83699 2.86346 3.31503 3.35215 3.55681 3.84882 3.97863 4.23329 4.29961 4.33377 4.47505 4.48327 4.63203 4.63324 4.95525 5.09595 5.14098 5.17751 5.21739 5.25721 5.31165 5.34825 5.35553 5.39702 5.47539 5.58900 5.63187 5.69019 5.71322 5.81660 5.86116 5.88758 5.89649 6.02696 6.03185 6.11241 6.24680 6.42241 7.11077 7.12311 7.59508 7.74128 7.81375 8.08558 8.60820 8.80403 9.48243 9.88343 10.68630 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.001899 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.192547 B =14744.203600 C =15477.725127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.010 4.010 3 Si 1.092 2.908 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.382 4.382 8 H 0.099 0.901 9 N -0.576 5.576 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.050 3.950 13 N -0.667 5.667 14 C 0.066 3.934 15 C -0.095 4.095 16 H 0.091 0.909 17 C -0.122 4.122 18 C -0.124 4.124 19 C -0.132 4.132 20 C 0.144 3.856 21 H 0.096 0.904 22 N -0.709 5.709 23 C 0.603 3.397 24 O -0.521 6.521 25 C -0.080 4.080 26 C -0.121 4.121 27 C -0.226 4.226 28 C -0.005 4.005 29 O -0.164 6.164 30 H 0.261 0.739 31 H 0.376 0.624 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.350 0.650 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.406 0.594 44 H 0.160 0.840 45 H 0.157 0.843 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.927 -27.928 4.164 28.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.213 4.213 3 Si 0.918 3.082 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.511 4.511 8 H 0.117 0.883 9 N -0.214 5.214 10 C 0.229 3.771 11 O -0.461 6.461 12 C -0.083 4.083 13 N -0.300 5.300 14 C -0.063 4.063 15 C -0.114 4.114 16 H 0.109 0.891 17 C -0.160 4.160 18 C -0.161 4.161 19 C -0.171 4.171 20 C 0.039 3.961 21 H 0.114 0.886 22 N -0.359 5.359 23 C 0.389 3.611 24 O -0.398 6.398 25 C -0.132 4.132 26 C -0.141 4.141 27 C -0.245 4.245 28 C -0.075 4.075 29 O -0.059 6.059 30 H 0.072 0.928 31 H 0.209 0.791 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.169 0.831 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.241 0.759 44 H 0.178 0.822 45 H 0.175 0.825 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.078 -26.152 4.376 26.827 hybrid contribution -0.461 -1.896 -0.416 1.995 sum 3.618 -28.048 3.960 28.556 Atomic orbital electron populations 1.70898 1.06509 1.29392 1.47211 1.26522 0.96564 1.02660 0.95523 0.83125 0.74418 0.73616 0.77055 1.20419 1.21039 1.20991 1.20532 0.94662 0.83869 1.52082 0.88335 1.41939 1.08200 1.05565 1.65688 1.19734 0.88415 0.84469 0.84475 1.90521 1.13673 1.86936 1.54933 1.21672 0.94426 0.91024 1.01154 1.60064 1.18787 0.99787 1.51370 1.22049 0.94955 0.88692 1.00629 1.22055 0.97542 0.92255 0.99578 0.89055 1.22486 1.00836 0.96448 0.96222 1.22524 0.97151 0.95351 1.01121 1.22772 0.98015 0.99541 0.96763 1.21722 1.00114 0.90488 0.83743 0.88594 1.46077 1.20197 1.39596 1.30056 1.16558 0.84476 0.79262 0.80786 1.90890 1.20057 1.65627 1.63261 1.22131 0.86513 1.04816 0.99741 1.22004 1.01242 0.96157 0.94726 1.21890 0.95087 1.05244 1.02307 1.24456 1.00892 0.92171 0.90010 1.84074 1.33997 1.52341 1.35461 0.92763 0.79137 0.89665 0.93926 0.83064 0.90998 0.95083 0.91285 0.90559 0.91520 0.91321 0.91280 0.90479 0.75858 0.82215 0.82533 0.77254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.43 13.68 55.50 0.76 -24.67 16 2 C -0.01 -0.28 5.50 -17.47 -0.10 -0.38 16 3 Si 1.09 24.41 29.92 -169.99 -5.09 19.32 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.38 -10.84 9.68 -14.93 -0.14 -10.99 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 9 N -0.58 -14.65 5.28 -10.96 -0.06 -14.71 16 10 C 0.44 10.58 7.82 -10.98 -0.09 10.49 16 11 O -0.58 -15.85 15.78 5.55 0.09 -15.77 16 12 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 13 N -0.67 -10.61 6.13 -115.05 -0.70 -11.31 16 14 C 0.07 0.80 4.80 -3.82 -0.02 0.79 16 15 C -0.09 -0.95 2.92 -89.50 -0.26 -1.21 16 16 H 0.09 0.96 7.62 -51.93 -0.40 0.57 16 17 C -0.12 -1.13 5.54 -25.03 -0.14 -1.27 16 18 C -0.12 -0.98 6.91 -24.70 -0.17 -1.15 16 19 C -0.13 -1.15 6.54 -25.07 -0.16 -1.31 16 20 C 0.14 1.38 2.90 -66.81 -0.19 1.19 16 21 H 0.10 1.05 7.10 -51.93 -0.37 0.69 16 22 N -0.71 -6.65 5.03 -54.03 -0.27 -6.92 16 23 C 0.60 6.80 7.78 -12.86 -0.10 6.70 16 24 O -0.52 -7.36 16.52 5.20 0.09 -7.28 16 25 C -0.08 -0.80 7.13 -36.79 -0.26 -1.06 16 26 C -0.12 -1.07 10.62 -39.39 -0.42 -1.49 16 27 C -0.23 -1.47 10.87 -39.89 -0.43 -1.91 16 28 C -0.01 -0.03 12.08 29.63 0.36 0.33 16 29 O -0.16 -1.39 10.40 4.98 0.05 -1.33 16 30 H 0.26 7.09 6.77 -40.82 -0.28 6.81 16 31 H 0.38 8.83 6.73 -40.82 -0.27 8.55 16 32 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.35 5.68 7.64 -39.29 -0.30 5.38 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.35 8.02 -51.93 -0.42 -0.06 16 37 H 0.07 0.66 7.77 -51.92 -0.40 0.25 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.63 8.04 -51.93 -0.42 0.22 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.41 3.20 8.08 -40.82 -0.33 2.87 16 44 H 0.16 1.31 8.06 -52.48 -0.42 0.88 16 45 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 46 H 0.21 0.38 8.06 -52.49 -0.42 -0.04 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -35.08 387.41 -8.04 -43.12 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -6.58 Total: 14.13 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.16 Total: -0.42 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.27 Total: -57.61 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: 0.23 Total: -24.38 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.09 Total: 19.32 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.08 -8.04 -43.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482667248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.438 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds