Wall clock time and date at job start Tue Mar 31 2020 18:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 O 1.42906 * 109.46885 * 64.99923 * 12 10 9 14 14 C 1.53003 * 109.46807 * 205.00000 * 10 9 7 15 15 N 1.46501 * 109.47349 * 55.00436 * 14 10 9 16 16 C 1.34775 * 119.99874 * 180.02562 * 15 14 10 17 17 O 1.21589 * 120.00476 * 359.97438 * 16 15 14 18 18 C 1.47529 * 119.99790 * 179.97438 * 16 15 14 19 19 C 1.39743 * 120.77026 * 359.71754 * 18 16 15 20 20 C 1.38891 * 118.87693 * 179.81953 * 19 18 16 21 21 C 1.37848 * 119.43186 * 0.28229 * 20 19 18 22 22 N 1.32758 * 120.42558 * 359.97438 * 21 20 19 23 23 C 1.31857 * 122.58199 * 359.90715 * 22 21 20 24 24 O 1.35420 * 119.88831 * 179.88564 * 23 22 21 25 25 C 1.50794 * 122.25657 * 180.24916 * 21 20 19 26 26 C 1.52704 * 110.59214 * 342.03668 * 25 21 20 27 27 C 1.53314 * 108.42565 * 51.40250 * 26 25 21 28 28 C 1.50543 * 117.76367 * 179.86931 * 20 19 18 29 29 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 31 31 H 1.08998 * 109.47306 * 185.00014 * 12 10 9 32 32 H 1.08990 * 109.47060 * 305.00051 * 12 10 9 33 33 H 0.96701 * 113.99874 * 179.97438 * 13 12 10 34 34 H 1.09009 * 109.46837 * 174.99910 * 14 10 9 35 35 H 1.09000 * 109.47433 * 294.99642 * 14 10 9 36 36 H 0.97000 * 120.00018 * 359.97438 * 15 14 10 37 37 H 1.08001 * 120.56109 * 0.04272 * 19 18 16 38 38 H 0.96701 * 114.00187 * 270.02102 * 24 23 22 39 39 H 1.08999 * 109.25584 * 102.32660 * 25 21 20 40 40 H 1.09000 * 109.25045 * 221.79229 * 25 21 20 41 41 H 1.09002 * 109.67359 * 171.13663 * 26 25 21 42 42 H 1.08999 * 109.67379 * 291.66059 * 26 25 21 43 43 H 1.09001 * 109.69247 * 49.75413 * 27 26 25 44 44 H 1.08993 * 109.69235 * 170.33576 * 27 26 25 45 45 H 1.09005 * 109.25326 * 42.58080 * 28 20 19 46 46 H 1.08998 * 109.25616 * 283.14685 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 1 3.5622 -3.2053 0.5994 12 6 4.2641 -2.9783 -1.4246 13 8 5.0834 -2.0720 -2.1659 14 6 5.4967 -2.2577 0.6257 15 7 5.3536 -1.6600 1.9556 16 6 6.4486 -1.3804 2.6900 17 8 7.5551 -1.6246 2.2491 18 6 6.3045 -0.7780 4.0290 19 6 5.0410 -0.4853 4.5490 20 6 4.9509 0.0780 5.8154 21 6 6.1040 0.3394 6.5241 22 7 7.2919 0.0559 6.0035 23 6 7.4332 -0.4811 4.8076 24 8 8.6720 -0.7458 4.3288 25 6 6.0802 0.9443 7.9052 26 6 4.7300 1.6027 8.1799 27 6 3.6236 0.5899 7.8631 28 6 3.5776 0.3859 6.3499 29 1 -0.4851 0.8400 0.0004 30 1 3.8646 -0.3621 0.0055 31 1 4.7298 -3.9637 -1.4143 32 1 3.2818 -3.0456 -1.8922 33 1 5.2233 -2.3315 -3.0869 34 1 6.0078 -3.2167 0.7115 35 1 6.0786 -1.5916 -0.0114 36 1 4.4709 -1.4648 2.3072 37 1 4.1494 -0.6968 3.9774 38 1 9.0658 -0.0158 3.8318 39 1 6.2553 0.1618 8.6434 40 1 6.8674 1.6942 7.9827 41 1 4.6708 1.8949 9.2284 42 1 4.6150 2.4822 7.5464 43 1 3.8415 -0.3581 8.3550 44 1 2.6644 0.9729 8.2112 45 1 2.9079 -0.4426 6.1190 46 1 3.2026 1.2931 5.8762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486046563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:37 Heat of formation + Delta-G solvation = -86.941679 kcal Electronic energy + Delta-G solvation = -29408.707767 eV Core-core repulsion = 25298.483959 eV Total energy + Delta-G solvation = -4110.223808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.14063 -39.26915 -37.97008 -37.17992 -35.76139 -35.04134 -33.90116 -33.33144 -31.61000 -30.44786 -29.72155 -28.84168 -25.71623 -24.53830 -23.65311 -23.29632 -22.71526 -21.06025 -20.23625 -19.76298 -18.59226 -18.08658 -17.23544 -17.06211 -16.91002 -16.12542 -15.58693 -15.23064 -15.08803 -14.51218 -14.44848 -14.37131 -14.14565 -14.01214 -13.61113 -13.50300 -13.31178 -13.10492 -13.02532 -12.83799 -12.73969 -12.44197 -11.80724 -11.74548 -11.62044 -11.21403 -11.06786 -11.02998 -11.01348 -10.92318 -10.76668 -10.19574 -10.03299 -9.85026 -9.71940 -9.54239 -9.36781 -9.06896 -8.86508 -8.64875 -7.42390 -5.90041 -3.26627 0.49611 0.96299 2.87072 3.25307 3.28764 3.35153 3.39259 3.45336 3.71186 4.25288 4.34083 4.48376 4.55418 4.59276 4.62531 4.76463 4.83946 4.91115 5.15648 5.16398 5.23373 5.27697 5.34407 5.38744 5.40814 5.42269 5.58498 5.65791 5.70809 5.77144 5.77903 5.86393 5.86656 5.88495 6.02475 6.07125 6.17951 6.31145 6.33344 6.55665 6.71767 7.46113 7.70184 7.78194 7.83640 8.06863 8.28802 8.39830 9.06674 9.79280 9.99544 11.27511 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.004037 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.903746 B = 6934.466616 C = 8916.638207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.012 3.988 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.252 4.252 8 H 0.091 0.909 9 N -0.739 5.739 10 C 0.171 3.829 11 H 0.075 0.925 12 C 0.060 3.940 13 O -0.565 6.565 14 C 0.117 3.883 15 N -0.712 5.712 16 C 0.559 3.441 17 O -0.530 6.530 18 C -0.202 4.202 19 C -0.028 4.028 20 C -0.143 4.143 21 C 0.177 3.823 22 N -0.515 5.515 23 C 0.369 3.631 24 O -0.460 6.460 25 C -0.070 4.070 26 C -0.121 4.121 27 C -0.121 4.121 28 C -0.079 4.079 29 H 0.260 0.740 30 H 0.366 0.634 31 H 0.032 0.968 32 H 0.055 0.945 33 H 0.367 0.633 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.406 0.594 37 H 0.148 0.852 38 H 0.403 0.597 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.687 -0.053 13.147 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.185 4.185 3 Si 0.712 3.288 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.109 0.891 9 N -0.383 5.383 10 C 0.060 3.940 11 H 0.093 0.907 12 C -0.022 4.022 13 O -0.369 6.369 14 C -0.008 4.008 15 N -0.365 5.365 16 C 0.344 3.656 17 O -0.408 6.408 18 C -0.209 4.209 19 C -0.054 4.054 20 C -0.145 4.145 21 C 0.042 3.958 22 N -0.234 5.234 23 C 0.187 3.813 24 O -0.267 6.267 25 C -0.108 4.108 26 C -0.159 4.159 27 C -0.159 4.159 28 C -0.117 4.117 29 H 0.071 0.929 30 H 0.199 0.801 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.212 0.788 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.243 0.757 37 H 0.165 0.835 38 H 0.262 0.738 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.924 -0.366 14.087 17.830 hybrid contribution -0.558 1.143 -1.415 1.903 sum 10.366 0.777 12.672 16.390 Atomic orbital electron populations 1.69694 1.05095 1.25982 1.56856 1.24628 0.95121 0.97112 1.01598 0.86607 0.79038 0.85012 0.78142 1.20964 1.21787 1.20370 1.19052 0.80389 0.94727 1.43957 0.89101 1.42743 1.03896 1.01806 1.89806 1.20583 0.90454 0.90572 0.92350 0.90739 1.22979 0.93841 0.90483 0.94860 1.86516 1.72184 1.51978 1.26212 1.21630 0.98442 0.98445 0.82235 1.45933 1.09177 1.63115 1.18259 1.17781 0.84877 0.78853 0.84041 1.90782 1.25074 1.53041 1.71860 1.21153 0.94413 1.08070 0.97229 1.21912 0.97014 0.92205 0.94248 1.20431 0.96898 1.02019 0.95129 1.21002 0.86276 0.92759 0.95806 1.67090 1.28134 1.14714 1.13449 1.18944 0.85170 0.89943 0.87260 1.84707 1.27258 1.42275 1.72507 1.20454 0.98923 1.00445 0.90976 1.21597 0.93588 0.98588 1.02085 1.21582 0.99244 0.99758 0.95290 1.20464 0.92077 1.03104 0.96007 0.92938 0.80085 0.95029 0.92714 0.78809 0.91462 0.90456 0.75700 0.83476 0.73775 0.89430 0.89431 0.90671 0.91221 0.91379 0.90784 0.89817 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.56 13.97 55.49 0.78 -26.79 16 2 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 3 Si 0.88 21.36 27.74 -169.99 -4.72 16.64 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.38 6.51 56.52 0.37 -6.01 16 7 C -0.25 -6.50 10.41 -15.06 -0.16 -6.66 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 9 N -0.74 -16.10 4.31 -53.42 -0.23 -16.33 16 10 C 0.17 3.02 2.84 -67.93 -0.19 2.83 16 11 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 12 C 0.06 0.96 6.86 37.16 0.25 1.22 16 13 O -0.57 -9.23 12.64 -35.23 -0.45 -9.67 16 14 C 0.12 1.95 5.12 -4.04 -0.02 1.92 16 15 N -0.71 -11.68 5.34 -61.35 -0.33 -12.01 16 16 C 0.56 9.55 7.77 -12.47 -0.10 9.45 16 17 O -0.53 -10.28 15.22 -16.35 -0.25 -10.53 16 18 C -0.20 -3.08 5.90 -104.77 -0.62 -3.70 16 19 C -0.03 -0.37 9.21 -38.78 -0.36 -0.73 16 20 C -0.14 -1.69 5.74 -104.60 -0.60 -2.29 16 21 C 0.18 2.15 6.63 -82.29 -0.55 1.60 16 22 N -0.51 -7.35 10.18 -9.20 -0.09 -7.44 16 23 C 0.37 5.63 7.78 -16.77 -0.13 5.50 16 24 O -0.46 -6.85 11.69 -39.59 -0.46 -7.31 16 25 C -0.07 -0.61 5.91 -27.99 -0.17 -0.78 16 26 C -0.12 -0.85 5.97 -26.72 -0.16 -1.01 16 27 C -0.12 -0.90 5.98 -26.69 -0.16 -1.06 16 28 C -0.08 -0.74 5.67 -28.08 -0.16 -0.90 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.37 8.31 5.66 -40.82 -0.23 8.08 16 31 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.37 4.23 9.12 45.56 0.42 4.64 16 34 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 35 H 0.08 1.43 7.39 -51.93 -0.38 1.04 16 36 H 0.41 6.47 6.25 -40.82 -0.26 6.22 16 37 H 0.15 1.82 6.51 -52.49 -0.34 1.48 16 38 H 0.40 4.36 9.06 45.56 0.41 4.77 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 43 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.75 8.13 -51.93 -0.42 0.33 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -34.31 377.00 -8.31 -42.63 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -5.04 Total: 19.50 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -3.20 Total: 5.64 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: 0.12 Total: -62.57 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -1.16 Total: -27.51 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.72 Total: 16.64 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.31 -8.31 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486046563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.316 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds