Wall clock time and date at job start Tue Mar 31 2020 18:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 O 1.42906 * 109.46885 * 64.99923 * 12 10 9 14 14 C 1.53003 * 109.46807 * 205.00000 * 10 9 7 15 15 N 1.46501 * 109.47349 * 55.00436 * 14 10 9 16 16 C 1.34775 * 119.99874 * 180.02562 * 15 14 10 17 17 O 1.21589 * 120.00476 * 359.97438 * 16 15 14 18 18 C 1.47529 * 119.99790 * 179.97438 * 16 15 14 19 19 C 1.39743 * 120.77026 * 359.71754 * 18 16 15 20 20 C 1.38891 * 118.87693 * 179.81953 * 19 18 16 21 21 C 1.37848 * 119.43186 * 0.28229 * 20 19 18 22 22 N 1.32758 * 120.42558 * 359.97438 * 21 20 19 23 23 C 1.31857 * 122.58199 * 359.90715 * 22 21 20 24 24 O 1.35420 * 119.88831 * 179.88564 * 23 22 21 25 25 C 1.50794 * 122.25657 * 180.24916 * 21 20 19 26 26 C 1.52704 * 110.59214 * 342.03668 * 25 21 20 27 27 C 1.53314 * 108.42565 * 51.40250 * 26 25 21 28 28 C 1.50543 * 117.76367 * 179.86931 * 20 19 18 29 29 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 31 31 H 1.08998 * 109.47306 * 185.00014 * 12 10 9 32 32 H 1.08990 * 109.47060 * 305.00051 * 12 10 9 33 33 H 0.96701 * 113.99874 * 179.97438 * 13 12 10 34 34 H 1.09009 * 109.46837 * 174.99910 * 14 10 9 35 35 H 1.09000 * 109.47433 * 294.99642 * 14 10 9 36 36 H 0.97000 * 120.00018 * 359.97438 * 15 14 10 37 37 H 1.08001 * 120.56109 * 0.04272 * 19 18 16 38 38 H 0.96701 * 114.00187 * 270.02102 * 24 23 22 39 39 H 1.08999 * 109.25584 * 102.32660 * 25 21 20 40 40 H 1.09000 * 109.25045 * 221.79229 * 25 21 20 41 41 H 1.09002 * 109.67359 * 171.13663 * 26 25 21 42 42 H 1.08999 * 109.67379 * 291.66059 * 26 25 21 43 43 H 1.09001 * 109.69247 * 49.75413 * 27 26 25 44 44 H 1.08993 * 109.69235 * 170.33576 * 27 26 25 45 45 H 1.09005 * 109.25326 * 42.58080 * 28 20 19 46 46 H 1.08998 * 109.25616 * 283.14685 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 1 3.5622 -3.2053 0.5994 12 6 4.2641 -2.9783 -1.4246 13 8 5.0834 -2.0720 -2.1659 14 6 5.4967 -2.2577 0.6257 15 7 5.3536 -1.6600 1.9556 16 6 6.4486 -1.3804 2.6900 17 8 7.5551 -1.6246 2.2491 18 6 6.3045 -0.7780 4.0290 19 6 5.0410 -0.4853 4.5490 20 6 4.9509 0.0780 5.8154 21 6 6.1040 0.3394 6.5241 22 7 7.2919 0.0559 6.0035 23 6 7.4332 -0.4811 4.8076 24 8 8.6720 -0.7458 4.3288 25 6 6.0802 0.9443 7.9052 26 6 4.7300 1.6027 8.1799 27 6 3.6236 0.5899 7.8631 28 6 3.5776 0.3859 6.3499 29 1 -0.4851 0.8400 0.0004 30 1 3.8646 -0.3621 0.0055 31 1 4.7298 -3.9637 -1.4143 32 1 3.2818 -3.0456 -1.8922 33 1 5.2233 -2.3315 -3.0869 34 1 6.0078 -3.2167 0.7115 35 1 6.0786 -1.5916 -0.0114 36 1 4.4709 -1.4648 2.3072 37 1 4.1494 -0.6968 3.9774 38 1 9.0658 -0.0158 3.8318 39 1 6.2553 0.1618 8.6434 40 1 6.8674 1.6942 7.9827 41 1 4.6708 1.8949 9.2284 42 1 4.6150 2.4822 7.5464 43 1 3.8415 -0.3581 8.3550 44 1 2.6644 0.9729 8.2112 45 1 2.9079 -0.4426 6.1190 46 1 3.2026 1.2931 5.8762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486046563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:36 Heat of formation + Delta-G solvation = -115.746706 kcal Electronic energy + Delta-G solvation = -29409.956847 eV Core-core repulsion = 25298.483959 eV Total energy + Delta-G solvation = -4111.472888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18401 -40.51151 -39.04918 -38.53211 -36.64459 -36.44451 -35.35136 -34.56211 -33.34835 -31.52430 -30.57654 -30.36149 -26.94871 -25.55662 -25.26787 -24.45759 -23.64299 -22.08858 -21.72261 -20.78443 -19.99121 -19.52594 -18.50535 -18.28201 -18.14127 -17.16983 -16.98228 -16.57655 -16.17368 -16.07890 -15.71888 -15.28602 -15.19649 -15.03769 -14.81023 -14.77838 -14.51623 -14.44009 -14.26449 -14.11529 -13.89198 -13.57983 -13.23372 -12.87960 -12.81906 -12.64032 -12.54407 -12.36028 -11.91318 -11.83329 -11.78992 -11.75851 -11.66034 -11.23347 -11.04481 -10.88428 -10.76024 -10.48104 -10.15348 -9.70661 -9.34390 -8.01205 -5.33787 -0.57306 -0.06406 1.35454 1.41131 1.44805 1.68967 2.02920 2.36242 2.47279 2.62914 3.29250 3.32638 3.44278 3.47003 3.56990 3.68309 3.72736 3.87465 3.97310 4.03829 4.07564 4.33702 4.36472 4.41859 4.51030 4.58446 4.59674 4.61178 4.67446 4.77836 4.80847 4.95942 4.96981 5.02823 5.13693 5.15292 5.23304 5.27959 5.37208 5.45906 5.47349 5.78231 6.22073 6.39334 6.49614 6.73104 7.01654 7.08185 7.08433 7.82229 8.01710 9.19599 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.004037 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.903746 B = 6934.466616 C = 8916.638207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.048 4.048 3 Si 0.940 3.060 4 H -0.292 1.292 5 H -0.295 1.295 6 H -0.259 1.259 7 C -0.223 4.223 8 H 0.069 0.931 9 N -0.741 5.741 10 C 0.166 3.834 11 H 0.082 0.918 12 C 0.065 3.935 13 O -0.584 6.584 14 C 0.128 3.872 15 N -0.710 5.710 16 C 0.559 3.441 17 O -0.558 6.558 18 C -0.221 4.221 19 C -0.030 4.030 20 C -0.141 4.141 21 C 0.176 3.824 22 N -0.528 5.528 23 C 0.357 3.643 24 O -0.475 6.475 25 C -0.070 4.070 26 C -0.116 4.116 27 C -0.119 4.119 28 C -0.081 4.081 29 H 0.257 0.743 30 H 0.363 0.637 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.388 0.612 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.408 0.592 37 H 0.153 0.847 38 H 0.416 0.584 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.361 0.231 14.636 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.240 4.240 3 Si 0.769 3.231 4 H -0.219 1.219 5 H -0.222 1.222 6 H -0.184 1.184 7 C -0.353 4.353 8 H 0.087 0.913 9 N -0.384 5.384 10 C 0.057 3.943 11 H 0.100 0.900 12 C -0.015 4.015 13 O -0.391 6.391 14 C 0.003 3.997 15 N -0.362 5.362 16 C 0.347 3.653 17 O -0.438 6.438 18 C -0.228 4.228 19 C -0.056 4.056 20 C -0.143 4.143 21 C 0.041 3.959 22 N -0.248 5.248 23 C 0.175 3.825 24 O -0.284 6.284 25 C -0.108 4.108 26 C -0.154 4.154 27 C -0.156 4.156 28 C -0.119 4.119 29 H 0.066 0.934 30 H 0.196 0.804 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.237 0.763 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.246 0.754 37 H 0.171 0.829 38 H 0.277 0.723 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.645 -0.112 15.561 19.436 hybrid contribution -0.729 0.959 -1.862 2.218 sum 10.916 0.847 13.698 17.536 Atomic orbital electron populations 1.69834 1.06740 1.26394 1.59750 1.25214 0.95688 1.00133 1.02982 0.85652 0.78550 0.81334 0.77523 1.21933 1.22169 1.18448 1.19019 0.82019 0.93572 1.40731 0.91283 1.42715 1.02487 1.03307 1.89867 1.20825 0.90609 0.88929 0.93909 0.89983 1.22793 0.93531 0.92030 0.93173 1.86460 1.71956 1.52604 1.28048 1.21493 0.97383 0.98799 0.81985 1.45909 1.09206 1.62983 1.18104 1.18036 0.84432 0.78314 0.84565 1.90756 1.26002 1.54411 1.72664 1.21034 0.95344 1.09723 0.96682 1.22056 0.96432 0.92148 0.94988 1.20739 0.98200 1.00911 0.94413 1.21678 0.85689 0.91557 0.97004 1.67181 1.29286 1.15210 1.13110 1.19078 0.85181 0.90434 0.87771 1.84655 1.27435 1.43441 1.72855 1.20609 1.00328 1.00834 0.88982 1.21608 0.92159 0.98070 1.03515 1.21604 1.00282 1.00196 0.93541 1.20573 0.90410 1.03265 0.97639 0.93413 0.80442 0.91317 0.94494 0.76332 0.89936 0.91978 0.75437 0.82941 0.72315 0.88227 0.88941 0.88280 0.91508 0.91053 0.89178 0.89481 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -58.86 13.97 21.65 0.30 -58.56 16 2 C -0.05 -2.64 5.50 84.86 0.47 -2.17 16 3 Si 0.94 44.16 27.74 68.60 1.90 46.06 16 4 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.26 -11.23 6.51 99.48 0.65 -10.58 16 7 C -0.22 -11.46 10.41 84.04 0.87 -10.59 16 8 H 0.07 3.84 8.06 -2.91 -0.02 3.81 16 9 N -0.74 -31.50 4.31 -322.93 -1.39 -32.90 16 10 C 0.17 5.63 2.84 44.99 0.13 5.75 16 11 H 0.08 2.68 8.08 -2.39 -0.02 2.66 16 12 C 0.07 1.98 6.86 71.98 0.49 2.47 16 13 O -0.58 -17.91 12.64 -148.98 -1.88 -19.79 16 14 C 0.13 4.07 5.12 86.38 0.44 4.52 16 15 N -0.71 -22.67 5.34 -466.26 -2.49 -25.16 16 16 C 0.56 18.95 7.77 86.69 0.67 19.62 16 17 O -0.56 -21.64 15.22 16.69 0.25 -21.39 16 18 C -0.22 -6.69 5.90 -19.96 -0.12 -6.81 16 19 C -0.03 -0.78 9.21 22.79 0.21 -0.57 16 20 C -0.14 -3.12 5.74 -19.85 -0.11 -3.24 16 21 C 0.18 4.00 6.63 42.36 0.28 4.28 16 22 N -0.53 -14.67 10.18 -296.24 -3.02 -17.69 16 23 C 0.36 10.84 7.78 85.19 0.66 11.51 16 24 O -0.47 -14.23 11.69 -66.46 -0.78 -15.00 16 25 C -0.07 -1.05 5.91 29.78 0.18 -0.87 16 26 C -0.12 -1.26 5.97 30.60 0.18 -1.08 16 27 C -0.12 -1.40 5.98 30.62 0.18 -1.21 16 28 C -0.08 -1.35 5.67 29.72 0.17 -1.19 16 29 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.36 15.97 5.66 -92.71 -0.52 15.44 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.39 8.09 9.12 -74.06 -0.68 7.42 16 34 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 35 H 0.06 2.22 7.39 -2.39 -0.02 2.20 16 36 H 0.41 12.66 6.25 -92.71 -0.58 12.08 16 37 H 0.15 3.66 6.51 -2.91 -0.02 3.64 16 38 H 0.42 9.17 9.06 -74.06 -0.67 8.50 16 39 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 41 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.07 0.79 8.10 -2.39 -0.02 0.77 16 43 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16 44 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.09 1.40 8.13 -2.38 -0.02 1.38 16 46 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -73.85 377.00 -3.84 -77.69 By element: Atomic # 1 Polarization: 47.75 SS G_CDS: -1.45 Total: 46.30 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 4.71 Total: 20.43 kcal Atomic # 7 Polarization: -127.71 SS G_CDS: -6.60 Total: -134.30 kcal Atomic # 8 Polarization: -53.78 SS G_CDS: -2.41 Total: -56.18 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.90 Total: 46.06 kcal Total: -73.85 -3.84 -77.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486046563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.054 kcal (2) G-P(sol) polarization free energy of solvation -73.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds