Wall clock time and date at job start Tue Mar 31 2020 18:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86796 * 119.99926 * 2 1 4 4 H 1.48498 * 109.47154 * 239.99803 * 3 2 1 5 5 H 1.48497 * 109.47071 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46933 * 120.00094 * 3 2 1 7 7 C 1.38951 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00620 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99930 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00146 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99672 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00084 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47181 * 179.97438 * 12 10 9 14 14 C 1.48555 * 110.99921 * 290.12460 * 13 12 10 15 15 C 1.54383 * 104.59455 * 200.96167 * 14 13 12 16 16 C 1.54258 * 105.06108 * 23.85103 * 15 14 13 17 17 H 1.09002 * 110.32102 * 241.00904 * 16 15 14 18 18 C 1.52999 * 110.32409 * 118.89963 * 16 15 14 19 19 N 1.46497 * 109.46992 * 67.82732 * 18 16 15 20 20 C 1.34777 * 119.99525 * 179.97438 * 19 18 16 21 21 O 1.21283 * 120.00463 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.99675 * 179.72583 * 20 19 18 23 23 C 1.50703 * 109.47148 * 180.28037 * 22 20 19 24 24 C 1.34506 * 125.79098 * 89.99753 * 23 22 20 25 25 C 1.41383 * 106.83843 * 180.02562 * 24 23 22 26 26 C 1.34506 * 106.84273 * 0.02562 * 25 24 23 27 27 O 1.34302 * 108.42103 * 359.73907 * 26 25 24 28 28 C 1.48721 * 111.01287 * 174.61373 * 13 12 10 29 29 H 0.97001 * 120.00027 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00120 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47534 * 59.99651 * 12 10 9 32 32 H 1.09006 * 109.46965 * 299.99688 * 12 10 9 33 33 H 1.08997 * 110.41537 * 82.18107 * 14 13 12 34 34 H 1.09001 * 110.51261 * 319.78513 * 14 13 12 35 35 H 1.09002 * 110.32083 * 264.95463 * 15 14 13 36 36 H 1.08996 * 110.41205 * 142.79357 * 15 14 13 37 37 H 1.08995 * 109.46838 * 307.82620 * 18 16 15 38 38 H 1.09001 * 109.46617 * 187.82955 * 18 16 15 39 39 H 0.97000 * 120.00580 * 0.02562 * 19 18 16 40 40 H 1.09009 * 109.47352 * 300.27556 * 22 20 19 41 41 H 1.08998 * 109.47585 * 60.27844 * 22 20 19 42 42 H 1.07999 * 126.58525 * 359.96412 * 24 23 22 43 43 H 1.08007 * 126.57660 * 180.02562 * 25 24 23 44 44 H 1.08005 * 125.79030 * 180.02562 * 26 25 24 45 45 H 1.08999 * 110.39662 * 40.24423 * 28 13 12 46 46 H 1.09004 * 110.51035 * 277.74721 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8630 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 2.9070 -6.0735 -1.3039 15 6 3.4267 -7.5261 -1.3600 16 6 2.4976 -8.3209 -0.4194 17 1 3.0712 -8.7602 0.3968 18 6 1.7611 -9.4127 -1.1981 19 7 2.7190 -10.4310 -1.6358 20 6 2.2936 -11.4963 -2.3435 21 8 1.1180 -11.6117 -2.6183 22 6 3.2799 -12.5407 -2.7991 23 6 2.5552 -13.6136 -3.5703 24 6 2.3381 -13.6177 -4.8978 25 6 1.6267 -14.8033 -5.1927 26 6 1.4510 -15.4525 -4.0278 27 8 2.0201 -14.7298 -3.0493 28 6 1.4943 -7.2831 0.1281 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3907 -0.0005 31 1 0.6174 -4.9206 -0.8913 32 1 0.6168 -4.9209 0.8887 33 1 3.7393 -5.3705 -1.3354 34 1 2.2189 -5.8840 -2.1277 35 1 4.4561 -7.5739 -1.0045 36 1 3.3594 -7.9150 -2.3760 37 1 1.2750 -8.9729 -2.0689 38 1 1.0097 -9.8727 -0.5562 39 1 3.6592 -10.3390 -1.4158 40 1 4.0303 -12.0770 -3.4396 41 1 3.7672 -12.9838 -1.9306 42 1 2.6471 -12.8603 -5.6029 43 1 1.2890 -15.1259 -6.1666 44 1 0.9428 -16.3971 -3.9015 45 1 0.5827 -7.2837 -0.4695 46 1 1.2649 -7.4909 1.1733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493243861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:37 Heat of formation + Delta-G solvation = -50.573331 kcal Electronic energy + Delta-G solvation = -27469.877708 eV Core-core repulsion = 23361.230950 eV Total energy + Delta-G solvation = -4108.646758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.85879 -40.10989 -39.11808 -37.67910 -35.20173 -33.88456 -33.50628 -32.67958 -31.86436 -31.15655 -29.40685 -27.86425 -26.88444 -24.95063 -23.93084 -22.06127 -21.68706 -21.07292 -20.53237 -20.16817 -19.09927 -17.93158 -17.75431 -17.50174 -16.58157 -16.13404 -16.00151 -15.89570 -15.40315 -15.10241 -14.70071 -14.51667 -14.39577 -13.90362 -13.73608 -13.72094 -13.31309 -13.12176 -13.01511 -12.96368 -12.65277 -12.36165 -12.15203 -11.94089 -11.86123 -11.48068 -11.35529 -11.13971 -10.94099 -10.85286 -10.53451 -10.43355 -10.29043 -10.20574 -10.17322 -9.47541 -9.38960 -8.77587 -8.50707 -8.02709 -7.93639 -6.40619 -3.81516 1.38449 2.27812 2.29560 2.59431 2.98546 3.20486 3.26162 3.30405 3.91543 4.01652 4.15915 4.23681 4.43183 4.55473 4.60537 4.66812 4.70452 4.73474 4.85318 4.92228 5.08597 5.21087 5.25717 5.33214 5.39004 5.48534 5.51545 5.60989 5.62529 5.73120 5.76781 5.78336 5.81588 5.89685 6.04559 6.10518 6.19553 6.20129 6.28589 6.43304 6.82037 7.09226 7.14005 7.20846 7.55707 7.86864 8.06931 8.63004 9.19046 9.55605 10.07618 10.77105 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.036320 B = 0.001553 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.742192 B =18020.754209 C =18078.006124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.445 3.555 11 O -0.579 6.579 12 C 0.034 3.966 13 N -0.484 5.484 14 C 0.037 3.963 15 C -0.121 4.121 16 C -0.103 4.103 17 H 0.087 0.913 18 C 0.127 3.873 19 N -0.726 5.726 20 C 0.512 3.488 21 O -0.529 6.529 22 C -0.061 4.061 23 C 0.003 3.997 24 C -0.195 4.195 25 C -0.213 4.213 26 C -0.038 4.038 27 O -0.173 6.173 28 C 0.037 3.963 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.403 0.597 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.202 0.798 45 H 0.045 0.955 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.995 -28.083 -6.367 29.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.230 3.770 11 O -0.462 6.462 12 C -0.098 4.098 13 N -0.208 5.208 14 C -0.091 4.091 15 C -0.159 4.159 16 C -0.123 4.123 17 H 0.105 0.895 18 C 0.004 3.996 19 N -0.379 5.379 20 C 0.297 3.703 21 O -0.404 6.404 22 C -0.101 4.101 23 C -0.047 4.047 24 C -0.214 4.214 25 C -0.233 4.233 26 C -0.106 4.106 27 O -0.069 6.069 28 C -0.091 4.091 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.237 0.763 40 H 0.143 0.857 41 H 0.131 0.869 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.179 -27.936 -5.807 28.837 hybrid contribution -0.580 0.847 -0.803 1.303 sum 3.599 -27.088 -6.610 28.115 Atomic orbital electron populations 1.69603 1.05930 1.28233 1.50594 1.25253 0.95626 0.99690 0.97354 0.85918 0.78752 0.80500 0.79040 1.19960 1.20994 1.19897 1.19647 0.93319 0.82235 1.47705 0.87989 1.41855 1.09172 1.04570 1.64584 1.19689 0.88381 0.84481 0.84412 1.90496 1.13669 1.86988 1.55094 1.22059 0.94279 0.91754 1.01679 1.65167 1.23476 1.00300 1.31841 1.23150 0.99674 0.96549 0.89720 1.22438 0.99563 0.95190 0.98744 1.22130 0.97160 0.94763 0.98208 0.89471 1.21482 0.91448 0.87915 0.98769 1.45955 1.12201 1.23327 1.56410 1.20393 0.89458 0.82229 0.78232 1.90767 1.17892 1.76547 1.55207 1.20088 0.96870 0.91409 1.01739 1.21445 1.02157 0.88641 0.92484 1.21543 1.04674 1.00126 0.95094 1.21816 1.05143 0.96797 0.99496 1.24006 1.01932 0.98700 0.85931 1.83981 1.56681 1.28676 1.37588 1.23131 0.95237 0.89488 1.01290 0.91843 0.77509 0.93228 0.89256 0.88240 0.94498 0.90806 0.91414 0.91229 0.91216 0.76256 0.85742 0.86925 0.83552 0.83430 0.78088 0.93631 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 10 C 0.45 10.50 7.59 -10.99 -0.08 10.42 16 11 O -0.58 -15.52 14.42 5.55 0.08 -15.44 16 12 C 0.03 0.61 5.30 -4.98 -0.03 0.58 16 13 N -0.48 -7.84 5.06 -231.27 -1.17 -9.01 16 14 C 0.04 0.56 5.80 -2.18 -0.01 0.55 16 15 C -0.12 -1.29 6.39 -25.35 -0.16 -1.45 16 16 C -0.10 -0.98 3.10 -89.24 -0.28 -1.26 16 17 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 18 C 0.13 1.16 4.74 -4.04 -0.02 1.14 16 19 N -0.73 -5.38 5.37 -60.30 -0.32 -5.71 16 20 C 0.51 4.83 7.82 -10.98 -0.09 4.75 16 21 O -0.53 -7.59 16.03 5.55 0.09 -7.50 16 22 C -0.06 -0.38 6.23 -29.03 -0.18 -0.56 16 23 C 0.00 0.03 5.81 -35.63 -0.21 -0.18 16 24 C -0.20 -1.80 10.81 -39.70 -0.43 -2.23 16 25 C -0.21 -1.79 10.91 -39.71 -0.43 -2.22 16 26 C -0.04 -0.31 12.09 29.41 0.36 0.05 16 27 O -0.17 -1.77 10.65 5.71 0.06 -1.71 16 28 C 0.04 0.45 6.05 -2.09 -0.01 0.43 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 31 H 0.05 0.81 7.88 -51.93 -0.41 0.41 16 32 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 33 H 0.10 1.82 6.91 -51.93 -0.36 1.47 16 34 H 0.04 0.56 7.82 -51.93 -0.41 0.15 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.63 7.67 -51.93 -0.40 0.24 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.40 1.84 8.36 -40.82 -0.34 1.50 16 40 H 0.12 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 44 H 0.20 0.83 8.06 -52.48 -0.42 0.41 16 45 H 0.05 0.52 7.72 -51.93 -0.40 0.12 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -35.99 387.59 -8.39 -44.39 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.80 Total: 9.34 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -1.81 Total: 2.03 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.83 Total: -52.99 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: 0.23 Total: -24.64 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.99 -8.39 -44.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493243861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.186 kcal (2) G-P(sol) polarization free energy of solvation -35.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds