Wall clock time and date at job start Tue Mar 31 2020 18:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86796 * 119.99926 * 2 1 4 4 H 1.48498 * 109.47154 * 239.99803 * 3 2 1 5 5 H 1.48497 * 109.47071 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46933 * 120.00094 * 3 2 1 7 7 C 1.38951 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00620 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99930 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00146 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99672 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00084 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47181 * 179.97438 * 12 10 9 14 14 C 1.48555 * 110.99921 * 290.12460 * 13 12 10 15 15 C 1.54383 * 104.59455 * 200.96167 * 14 13 12 16 16 C 1.54258 * 105.06108 * 23.85103 * 15 14 13 17 17 H 1.09002 * 110.32102 * 241.00904 * 16 15 14 18 18 C 1.52999 * 110.32409 * 118.89963 * 16 15 14 19 19 N 1.46497 * 109.46992 * 67.82732 * 18 16 15 20 20 C 1.34777 * 119.99525 * 179.97438 * 19 18 16 21 21 O 1.21283 * 120.00463 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.99675 * 179.72583 * 20 19 18 23 23 C 1.50703 * 109.47148 * 180.28037 * 22 20 19 24 24 C 1.34506 * 125.79098 * 89.99753 * 23 22 20 25 25 C 1.41383 * 106.83843 * 180.02562 * 24 23 22 26 26 C 1.34506 * 106.84273 * 0.02562 * 25 24 23 27 27 O 1.34302 * 108.42103 * 359.73907 * 26 25 24 28 28 C 1.48721 * 111.01287 * 174.61373 * 13 12 10 29 29 H 0.97001 * 120.00027 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00120 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47534 * 59.99651 * 12 10 9 32 32 H 1.09006 * 109.46965 * 299.99688 * 12 10 9 33 33 H 1.08997 * 110.41537 * 82.18107 * 14 13 12 34 34 H 1.09001 * 110.51261 * 319.78513 * 14 13 12 35 35 H 1.09002 * 110.32083 * 264.95463 * 15 14 13 36 36 H 1.08996 * 110.41205 * 142.79357 * 15 14 13 37 37 H 1.08995 * 109.46838 * 307.82620 * 18 16 15 38 38 H 1.09001 * 109.46617 * 187.82955 * 18 16 15 39 39 H 0.97000 * 120.00580 * 0.02562 * 19 18 16 40 40 H 1.09009 * 109.47352 * 300.27556 * 22 20 19 41 41 H 1.08998 * 109.47585 * 60.27844 * 22 20 19 42 42 H 1.07999 * 126.58525 * 359.96412 * 24 23 22 43 43 H 1.08007 * 126.57660 * 180.02562 * 25 24 23 44 44 H 1.08005 * 125.79030 * 180.02562 * 26 25 24 45 45 H 1.08999 * 110.39662 * 40.24423 * 28 13 12 46 46 H 1.09004 * 110.51035 * 277.74721 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8630 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 2.9070 -6.0735 -1.3039 15 6 3.4267 -7.5261 -1.3600 16 6 2.4976 -8.3209 -0.4194 17 1 3.0712 -8.7602 0.3968 18 6 1.7611 -9.4127 -1.1981 19 7 2.7190 -10.4310 -1.6358 20 6 2.2936 -11.4963 -2.3435 21 8 1.1180 -11.6117 -2.6183 22 6 3.2799 -12.5407 -2.7991 23 6 2.5552 -13.6136 -3.5703 24 6 2.3381 -13.6177 -4.8978 25 6 1.6267 -14.8033 -5.1927 26 6 1.4510 -15.4525 -4.0278 27 8 2.0201 -14.7298 -3.0493 28 6 1.4943 -7.2831 0.1281 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3907 -0.0005 31 1 0.6174 -4.9206 -0.8913 32 1 0.6168 -4.9209 0.8887 33 1 3.7393 -5.3705 -1.3354 34 1 2.2189 -5.8840 -2.1277 35 1 4.4561 -7.5739 -1.0045 36 1 3.3594 -7.9150 -2.3760 37 1 1.2750 -8.9729 -2.0689 38 1 1.0097 -9.8727 -0.5562 39 1 3.6592 -10.3390 -1.4158 40 1 4.0303 -12.0770 -3.4396 41 1 3.7672 -12.9838 -1.9306 42 1 2.6471 -12.8603 -5.6029 43 1 1.2890 -15.1259 -6.1666 44 1 0.9428 -16.3971 -3.9015 45 1 0.5827 -7.2837 -0.4695 46 1 1.2649 -7.4909 1.1733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493243861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:37 Heat of formation + Delta-G solvation = -78.468406 kcal Electronic energy + Delta-G solvation = -27471.087329 eV Core-core repulsion = 23361.230950 eV Total energy + Delta-G solvation = -4109.856380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.47011 -40.97336 -40.40315 -39.22637 -36.23250 -35.77860 -34.14184 -33.51643 -33.22668 -32.65204 -30.39198 -28.86278 -28.00686 -26.39948 -25.19435 -22.69938 -22.65722 -21.93918 -21.42819 -21.01373 -20.73928 -19.84920 -18.49445 -18.15293 -17.74005 -17.35847 -16.78406 -16.76721 -16.55445 -16.38341 -16.19831 -15.82558 -15.47170 -15.30025 -14.92523 -14.55678 -14.47286 -14.13176 -13.75539 -13.72557 -13.56920 -13.51634 -13.46600 -13.10678 -13.00469 -12.90668 -12.65299 -12.43195 -12.42286 -12.12563 -12.10097 -11.85312 -11.49014 -11.42154 -11.07940 -10.81696 -10.31649 -10.10971 -10.00856 -9.38851 -9.35947 -8.46126 -5.95072 0.76875 1.39890 1.41488 1.52606 1.60248 1.68115 2.03902 2.05818 2.28140 2.36633 2.85627 3.20336 3.37098 3.61039 3.66897 3.75259 3.86517 4.01101 4.15232 4.18548 4.26699 4.28806 4.39438 4.39911 4.42048 4.50805 4.52138 4.55029 4.70194 4.71458 4.82666 4.93041 4.94596 5.02366 5.16863 5.21525 5.23197 5.27901 5.40637 5.44302 5.62209 5.85564 5.94837 6.08975 6.20917 6.54272 6.60896 7.13053 7.23942 7.56563 8.12441 8.71107 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.036320 B = 0.001553 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.742192 B =18020.754209 C =18078.006124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.576 5.576 10 C 0.442 3.558 11 O -0.615 6.615 12 C 0.046 3.954 13 N -0.506 5.506 14 C 0.032 3.968 15 C -0.109 4.109 16 C -0.087 4.087 17 H 0.106 0.894 18 C 0.135 3.865 19 N -0.711 5.711 20 C 0.511 3.489 21 O -0.584 6.584 22 C -0.055 4.055 23 C -0.016 4.016 24 C -0.215 4.215 25 C -0.231 4.231 26 C -0.045 4.045 27 O -0.193 6.193 28 C 0.035 3.965 29 H 0.277 0.723 30 H 0.395 0.605 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.059 0.941 34 H 0.032 0.968 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.420 0.580 40 H 0.158 0.842 41 H 0.140 0.860 42 H 0.156 0.844 43 H 0.164 0.836 44 H 0.234 0.766 45 H 0.052 0.948 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 -29.406 -6.222 30.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.213 5.213 10 C 0.229 3.771 11 O -0.501 6.501 12 C -0.086 4.086 13 N -0.230 5.230 14 C -0.096 4.096 15 C -0.147 4.147 16 C -0.106 4.106 17 H 0.124 0.876 18 C 0.011 3.989 19 N -0.364 5.364 20 C 0.298 3.702 21 O -0.464 6.464 22 C -0.094 4.094 23 C -0.066 4.066 24 C -0.234 4.234 25 C -0.250 4.250 26 C -0.112 4.112 27 O -0.090 6.090 28 C -0.092 4.092 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.084 0.916 32 H 0.127 0.873 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.258 0.742 40 H 0.175 0.825 41 H 0.157 0.843 42 H 0.174 0.826 43 H 0.182 0.818 44 H 0.250 0.750 45 H 0.071 0.929 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.702 -29.271 -5.651 30.180 hybrid contribution -0.741 1.215 -0.863 1.664 sum 3.961 -28.056 -6.514 29.073 Atomic orbital electron populations 1.69670 1.06861 1.29326 1.50360 1.26042 0.96539 1.02417 0.96284 0.84980 0.77742 0.76612 0.78946 1.19714 1.19519 1.19673 1.19635 0.92706 0.84008 1.50019 0.90272 1.41937 1.09270 1.04731 1.65371 1.20732 0.88306 0.85868 0.82177 1.90468 1.15613 1.87849 1.56135 1.21916 0.94049 0.89289 1.03331 1.65112 1.24005 1.01510 1.32386 1.23095 0.98366 0.98710 0.89384 1.22370 1.00063 0.92112 1.00157 1.22007 0.96303 0.93972 0.98317 0.87593 1.21283 0.91622 0.87984 0.98021 1.45806 1.12866 1.22320 1.55447 1.20935 0.89169 0.82687 0.77404 1.90748 1.20369 1.77836 1.57450 1.20243 0.96154 0.89854 1.03158 1.22023 1.02472 0.89086 0.93036 1.21883 1.05083 1.00795 0.95661 1.22171 1.05393 0.96864 1.00568 1.24717 1.01393 0.99531 0.85539 1.83972 1.57158 1.29309 1.38567 1.23244 0.95808 0.87731 1.02462 0.91334 0.77113 0.91638 0.87269 0.92199 0.94969 0.89840 0.89792 0.92692 0.91571 0.74222 0.82492 0.84257 0.82644 0.81797 0.74998 0.92944 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.58 -29.95 5.29 -306.98 -1.62 -31.57 16 10 C 0.44 21.30 7.59 87.66 0.66 21.97 16 11 O -0.61 -34.11 14.42 -3.07 -0.04 -34.15 16 12 C 0.05 1.61 5.30 85.56 0.45 2.06 16 13 N -0.51 -15.94 5.06 -885.59 -4.48 -20.42 16 14 C 0.03 0.98 5.80 86.45 0.50 1.48 16 15 C -0.11 -2.09 6.39 31.49 0.20 -1.89 16 16 C -0.09 -1.41 3.10 -9.90 -0.03 -1.44 16 17 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 18 C 0.14 2.17 4.74 86.38 0.41 2.58 16 19 N -0.71 -8.62 5.37 -463.07 -2.48 -11.10 16 20 C 0.51 8.72 7.82 87.66 0.69 9.40 16 21 O -0.58 -16.50 16.03 -3.04 -0.05 -16.55 16 22 C -0.06 -0.55 6.23 29.10 0.18 -0.37 16 23 C -0.02 -0.28 5.81 24.83 0.14 -0.14 16 24 C -0.22 -3.81 10.81 22.19 0.24 -3.57 16 25 C -0.23 -3.71 10.91 22.19 0.24 -3.47 16 26 C -0.04 -0.68 12.09 66.97 0.81 0.13 16 27 O -0.19 -3.81 10.65 -2.48 -0.03 -3.83 16 28 C 0.04 0.77 6.05 86.42 0.52 1.29 16 29 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 31 H 0.07 2.10 7.88 -2.39 -0.02 2.08 16 32 H 0.11 3.39 8.13 -2.38 -0.02 3.37 16 33 H 0.06 2.28 6.91 -2.39 -0.02 2.26 16 34 H 0.03 0.98 7.82 -2.39 -0.02 0.96 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.36 7.67 -2.39 -0.02 1.34 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.42 2.27 8.36 -92.71 -0.78 1.50 16 40 H 0.16 0.49 8.14 -2.38 -0.02 0.47 16 41 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 43 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 44 H 0.23 1.55 8.06 -2.91 -0.02 1.52 16 45 H 0.05 1.08 7.72 -2.39 -0.02 1.07 16 46 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -81.27 387.59 -0.59 -81.86 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -0.49 Total: 30.99 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 6.31 Total: 9.47 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -8.31 Total: -112.94 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -0.12 Total: -54.54 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -81.27 -0.59 -81.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493243861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.388 kcal (2) G-P(sol) polarization free energy of solvation -81.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds