Wall clock time and date at job start Tue Mar 31 2020 18:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00278 * 2 1 4 4 H 1.48502 * 109.47335 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46875 * 299.99650 * 3 2 1 6 6 H 1.48504 * 109.47413 * 59.99253 * 3 2 1 7 7 C 1.38819 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99534 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99886 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47156 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47042 * 179.97438 * 11 10 9 13 13 C 1.53038 * 109.45730 * 174.99882 * 12 11 10 14 14 C 1.53199 * 109.31091 * 181.39203 * 13 12 11 15 15 N 1.46929 * 108.77296 * 305.36492 * 14 13 12 16 16 C 1.34775 * 120.63172 * 233.58833 * 15 14 13 17 17 O 1.21603 * 120.00162 * 6.18658 * 16 15 14 18 18 C 1.47491 * 120.00270 * 186.18752 * 16 15 14 19 19 C 1.37810 * 126.77371 * 208.00723 * 18 16 15 20 20 O 1.33501 * 108.34162 * 179.73450 * 19 18 16 21 21 C 1.34881 * 109.88589 * 0.22815 * 20 19 18 22 22 C 1.46773 * 125.65122 * 179.97438 * 21 20 19 23 23 N 1.34777 * 119.99935 * 0.02562 * 22 21 20 24 24 O 1.21682 * 120.00234 * 180.02562 * 22 21 20 25 25 C 1.36062 * 108.69472 * 359.97438 * 21 20 19 26 26 C 1.46925 * 118.73881 * 53.86133 * 15 14 13 27 27 C 1.53039 * 109.46436 * 295.06957 * 12 11 10 28 28 H 0.96994 * 119.99504 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00033 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47143 * 60.00068 * 10 9 7 31 31 H 1.09007 * 109.47394 * 300.00624 * 10 9 7 32 32 H 1.09005 * 109.47041 * 60.00154 * 11 10 9 33 33 H 1.08995 * 109.47321 * 299.99672 * 11 10 9 34 34 H 1.09006 * 109.45751 * 55.03274 * 12 11 10 35 35 H 1.08995 * 109.49904 * 61.43750 * 13 12 11 36 36 H 1.09001 * 109.50366 * 301.33700 * 13 12 11 37 37 H 1.09003 * 109.58446 * 185.58511 * 14 13 12 38 38 H 1.08992 * 109.70574 * 65.21847 * 14 13 12 39 39 H 1.07996 * 125.82698 * 0.02562 * 19 18 16 40 40 H 0.96994 * 120.00438 * 359.97438 * 23 22 21 41 41 H 0.97006 * 119.99428 * 179.97438 * 23 22 21 42 42 H 1.08000 * 126.68411 * 180.02562 * 25 21 20 43 43 H 1.08999 * 109.58566 * 65.92846 * 26 15 14 44 44 H 1.09005 * 109.58773 * 186.35469 * 26 15 14 45 45 H 1.08993 * 109.49498 * 298.56643 * 27 12 11 46 46 H 1.08999 * 109.49548 * 58.66459 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0027 11 6 1.0637 -4.8197 0.0031 12 6 1.8287 -6.1448 0.0037 13 6 0.8386 -7.3050 0.1299 14 6 1.6103 -8.6279 0.1651 15 7 2.4779 -8.7009 -1.0185 16 6 2.4246 -9.7646 -1.8444 17 8 1.5777 -10.6214 -1.6786 18 6 3.3934 -9.8896 -2.9495 19 6 3.1983 -10.5413 -4.1480 20 8 4.3099 -10.4211 -4.8774 21 6 5.2331 -9.7143 -4.1937 22 6 6.5796 -9.3784 -4.6714 23 7 6.9826 -9.7848 -5.8916 24 8 7.3321 -8.7329 -3.9659 25 6 4.7092 -9.3643 -2.9877 26 6 3.4089 -7.5951 -1.2812 27 6 2.6132 -6.2812 -1.3032 28 1 -0.4849 0.8400 -0.0004 29 1 0.3556 -2.3880 0.0016 30 1 2.6846 -3.7138 0.8928 31 1 2.6848 -3.7154 -0.8872 32 1 0.4374 -4.7626 -0.8872 33 1 0.4367 -4.7614 0.8928 34 1 2.5203 -6.1644 0.8460 35 1 0.1624 -7.3008 -0.7250 36 1 0.2640 -7.1946 1.0495 37 1 0.9076 -9.4612 0.1549 38 1 2.2193 -8.6743 1.0678 39 1 2.2980 -11.0568 -4.4480 40 1 6.3830 -10.2996 -6.4539 41 1 7.8725 -9.5624 -6.2074 42 1 5.1993 -8.7943 -2.2123 43 1 4.1618 -7.5565 -0.4939 44 1 3.8934 -7.7467 -2.2459 45 1 1.9203 -6.2867 -2.1445 46 1 3.3016 -5.4421 -1.4036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495422239.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:22 Heat of formation + Delta-G solvation = -49.051760 kcal Electronic energy + Delta-G solvation = -28393.845239 eV Core-core repulsion = 24285.264461 eV Total energy + Delta-G solvation = -4108.580778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.37331 -40.28987 -39.65088 -37.93823 -35.38964 -34.51968 -33.99322 -33.28284 -31.31583 -30.94967 -30.49267 -28.45633 -25.57059 -24.47060 -23.87393 -23.42550 -22.53295 -21.58561 -20.81496 -20.18809 -19.63919 -18.33389 -17.70153 -17.11685 -17.00656 -16.87069 -16.63020 -15.93417 -15.42335 -14.88113 -14.76740 -14.73076 -14.67505 -14.21755 -13.94544 -13.83948 -13.62135 -13.56883 -13.16831 -12.96176 -12.82604 -12.65764 -12.13198 -11.39874 -11.27300 -11.15093 -11.01666 -10.99550 -10.79642 -10.66022 -10.52395 -10.34150 -10.33227 -10.23137 -9.98734 -9.90053 -9.65656 -9.30447 -8.85227 -8.80926 -6.88761 -5.74539 -3.02835 0.45301 1.16447 2.02844 2.56096 2.65174 2.84348 3.02592 3.44534 3.50047 3.52452 4.05555 4.17248 4.33101 4.58990 4.63153 4.75454 4.80187 4.85469 4.89501 5.03446 5.15557 5.25232 5.29409 5.38709 5.53821 5.56877 5.60735 5.69823 5.72854 5.82678 5.85206 6.00700 6.02339 6.07409 6.17508 6.21791 6.35970 6.38420 6.43883 6.47539 6.71125 6.89586 6.94546 7.13160 7.56778 7.72315 7.86506 8.44878 9.55642 10.15107 10.49216 11.48663 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011980 B = 0.002371 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.708645 B =11807.027425 C =13631.563953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.017 4.017 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.152 3.848 11 C -0.121 4.121 12 C -0.083 4.083 13 C -0.128 4.128 14 C 0.113 3.887 15 N -0.599 5.599 16 C 0.590 3.410 17 O -0.544 6.544 18 C -0.240 4.240 19 C 0.074 3.926 20 O -0.154 6.154 21 C -0.088 4.088 22 C 0.610 3.390 23 N -0.843 5.843 24 O -0.516 6.516 25 C -0.090 4.090 26 C 0.090 3.910 27 C -0.131 4.131 28 H 0.254 0.746 29 H 0.383 0.617 30 H 0.016 0.984 31 H 0.019 0.981 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.227 0.773 40 H 0.407 0.593 41 H 0.411 0.589 42 H 0.175 0.825 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.067 0.933 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.380 -26.713 -10.355 30.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.025 3.975 11 C -0.158 4.158 12 C -0.102 4.102 13 C -0.167 4.167 14 C -0.009 4.009 15 N -0.331 5.331 16 C 0.378 3.622 17 O -0.423 6.423 18 C -0.244 4.244 19 C 0.001 3.999 20 O -0.048 6.048 21 C -0.139 4.139 22 C 0.395 3.605 23 N -0.406 5.406 24 O -0.393 6.393 25 C -0.110 4.110 26 C -0.032 4.032 27 C -0.169 4.169 28 H 0.064 0.936 29 H 0.216 0.784 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.243 0.757 40 H 0.236 0.764 41 H 0.243 0.757 42 H 0.193 0.807 43 H 0.092 0.908 44 H 0.113 0.887 45 H 0.086 0.914 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.517 -26.717 -9.966 30.061 hybrid contribution 0.098 0.967 -0.273 1.010 sum 9.614 -25.749 -10.239 29.331 Atomic orbital electron populations 1.69675 1.05123 1.25483 1.58066 1.24755 0.95543 0.97728 1.03202 0.86115 0.78796 0.84124 0.77178 1.20533 1.21882 1.21879 1.19292 0.91053 0.84244 1.42259 0.91167 1.42401 1.05903 1.00169 1.89433 1.20703 0.93614 0.85591 0.97595 1.21757 0.98683 0.93314 1.02089 1.21098 0.96972 0.94566 0.97571 1.21982 0.98162 0.93522 1.02996 1.21692 0.93626 0.99265 0.86340 1.47934 1.39833 1.19303 1.26042 1.17203 0.82756 0.81475 0.80735 1.90792 1.37410 1.41310 1.72751 1.20654 0.96686 1.08703 0.98353 1.25024 0.88927 0.96720 0.89190 1.83936 1.21388 1.57096 1.42392 1.21846 0.91906 1.05626 0.94524 1.16493 0.83255 0.78909 0.81865 1.43674 1.20629 1.58464 1.17875 1.90975 1.52775 1.39446 1.56120 1.22240 0.93283 0.98457 0.97061 1.22447 0.91961 0.86200 1.02617 1.22129 0.99856 0.96400 0.98544 0.93601 0.78370 0.96613 0.96291 0.92058 0.91879 0.90921 0.91421 0.90417 0.88966 0.91200 0.75687 0.76364 0.75710 0.80732 0.90777 0.88698 0.91398 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.73 13.06 55.49 0.72 -28.00 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.74 -19.02 5.60 -59.90 -0.34 -19.35 16 10 C 0.15 3.04 6.02 -4.04 -0.02 3.02 16 11 C -0.12 -1.90 4.80 -26.73 -0.13 -2.03 16 12 C -0.08 -1.00 2.15 -90.58 -0.19 -1.20 16 13 C -0.13 -1.38 5.36 -26.61 -0.14 -1.52 16 14 C 0.11 1.16 6.44 -3.71 -0.02 1.13 16 15 N -0.60 -6.41 2.97 -173.74 -0.52 -6.92 16 16 C 0.59 6.88 7.64 -12.49 -0.10 6.79 16 17 O -0.54 -7.81 16.44 5.28 0.09 -7.73 16 18 C -0.24 -2.25 5.60 -104.95 -0.59 -2.84 16 19 C 0.07 0.52 12.04 30.58 0.37 0.89 16 20 O -0.15 -1.04 10.33 6.19 0.06 -0.98 16 21 C -0.09 -0.73 7.09 -36.92 -0.26 -0.99 16 22 C 0.61 5.18 8.06 -12.81 -0.10 5.08 16 23 N -0.84 -3.69 8.87 30.28 0.27 -3.42 16 24 O -0.52 -6.29 17.68 5.20 0.09 -6.20 16 25 C -0.09 -0.80 8.14 -39.03 -0.32 -1.12 16 26 C 0.09 0.86 5.28 -3.49 -0.02 0.85 16 27 C -0.13 -1.49 5.16 -26.39 -0.14 -1.63 16 28 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.38 10.41 7.67 -40.82 -0.31 10.09 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.02 0.38 6.53 -51.93 -0.34 0.04 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.01 7.00 -51.93 -0.36 0.65 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.23 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.41 0.85 8.57 -40.82 -0.35 0.50 16 41 H 0.41 1.21 8.93 -40.82 -0.36 0.84 16 42 H 0.18 1.47 6.42 -52.49 -0.34 1.14 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.85 4.07 -51.93 -0.21 0.64 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 1.04 6.50 -51.93 -0.34 0.70 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -36.39 378.25 -7.24 -43.63 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.39 Total: 6.68 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -1.91 Total: -1.07 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.14 Total: -57.70 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.24 Total: -14.91 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.39 -7.24 -43.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495422239.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.420 kcal (2) G-P(sol) polarization free energy of solvation -36.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds