Wall clock time and date at job start Tue Mar 31 2020 18:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00278 * 2 1 4 4 H 1.48502 * 109.47335 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46875 * 299.99650 * 3 2 1 6 6 H 1.48504 * 109.47413 * 59.99253 * 3 2 1 7 7 C 1.38819 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99534 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99886 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47156 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47042 * 179.97438 * 11 10 9 13 13 C 1.53038 * 109.45730 * 174.99882 * 12 11 10 14 14 C 1.53199 * 109.31091 * 181.39203 * 13 12 11 15 15 N 1.46929 * 108.77296 * 305.36492 * 14 13 12 16 16 C 1.34775 * 120.63172 * 233.58833 * 15 14 13 17 17 O 1.21603 * 120.00162 * 6.18658 * 16 15 14 18 18 C 1.47491 * 120.00270 * 186.18752 * 16 15 14 19 19 C 1.37810 * 126.77371 * 208.00723 * 18 16 15 20 20 O 1.33501 * 108.34162 * 179.73450 * 19 18 16 21 21 C 1.34881 * 109.88589 * 0.22815 * 20 19 18 22 22 C 1.46773 * 125.65122 * 179.97438 * 21 20 19 23 23 N 1.34777 * 119.99935 * 0.02562 * 22 21 20 24 24 O 1.21682 * 120.00234 * 180.02562 * 22 21 20 25 25 C 1.36062 * 108.69472 * 359.97438 * 21 20 19 26 26 C 1.46925 * 118.73881 * 53.86133 * 15 14 13 27 27 C 1.53039 * 109.46436 * 295.06957 * 12 11 10 28 28 H 0.96994 * 119.99504 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00033 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47143 * 60.00068 * 10 9 7 31 31 H 1.09007 * 109.47394 * 300.00624 * 10 9 7 32 32 H 1.09005 * 109.47041 * 60.00154 * 11 10 9 33 33 H 1.08995 * 109.47321 * 299.99672 * 11 10 9 34 34 H 1.09006 * 109.45751 * 55.03274 * 12 11 10 35 35 H 1.08995 * 109.49904 * 61.43750 * 13 12 11 36 36 H 1.09001 * 109.50366 * 301.33700 * 13 12 11 37 37 H 1.09003 * 109.58446 * 185.58511 * 14 13 12 38 38 H 1.08992 * 109.70574 * 65.21847 * 14 13 12 39 39 H 1.07996 * 125.82698 * 0.02562 * 19 18 16 40 40 H 0.96994 * 120.00438 * 359.97438 * 23 22 21 41 41 H 0.97006 * 119.99428 * 179.97438 * 23 22 21 42 42 H 1.08000 * 126.68411 * 180.02562 * 25 21 20 43 43 H 1.08999 * 109.58566 * 65.92846 * 26 15 14 44 44 H 1.09005 * 109.58773 * 186.35469 * 26 15 14 45 45 H 1.08993 * 109.49498 * 298.56643 * 27 12 11 46 46 H 1.08999 * 109.49548 * 58.66459 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0027 11 6 1.0637 -4.8197 0.0031 12 6 1.8287 -6.1448 0.0037 13 6 0.8386 -7.3050 0.1299 14 6 1.6103 -8.6279 0.1651 15 7 2.4779 -8.7009 -1.0185 16 6 2.4246 -9.7646 -1.8444 17 8 1.5777 -10.6214 -1.6786 18 6 3.3934 -9.8896 -2.9495 19 6 3.1983 -10.5413 -4.1480 20 8 4.3099 -10.4211 -4.8774 21 6 5.2331 -9.7143 -4.1937 22 6 6.5796 -9.3784 -4.6714 23 7 6.9826 -9.7848 -5.8916 24 8 7.3321 -8.7329 -3.9659 25 6 4.7092 -9.3643 -2.9877 26 6 3.4089 -7.5951 -1.2812 27 6 2.6132 -6.2812 -1.3032 28 1 -0.4849 0.8400 -0.0004 29 1 0.3556 -2.3880 0.0016 30 1 2.6846 -3.7138 0.8928 31 1 2.6848 -3.7154 -0.8872 32 1 0.4374 -4.7626 -0.8872 33 1 0.4367 -4.7614 0.8928 34 1 2.5203 -6.1644 0.8460 35 1 0.1624 -7.3008 -0.7250 36 1 0.2640 -7.1946 1.0495 37 1 0.9076 -9.4612 0.1549 38 1 2.2193 -8.6743 1.0678 39 1 2.2980 -11.0568 -4.4480 40 1 6.3830 -10.2996 -6.4539 41 1 7.8725 -9.5624 -6.2074 42 1 5.1993 -8.7943 -2.2123 43 1 4.1618 -7.5565 -0.4939 44 1 3.8934 -7.7467 -2.2459 45 1 1.9203 -6.2867 -2.1445 46 1 3.3016 -5.4421 -1.4036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495422239.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:21 Heat of formation + Delta-G solvation = -76.519604 kcal Electronic energy + Delta-G solvation = -28395.036334 eV Core-core repulsion = 24285.264461 eV Total energy + Delta-G solvation = -4109.771873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.98633 -41.16123 -40.31308 -38.96480 -36.90828 -35.37480 -34.90412 -34.33549 -32.92152 -31.98283 -31.13321 -29.91642 -26.88689 -25.31176 -25.10248 -24.26159 -23.83873 -22.46280 -21.96434 -21.13968 -20.32768 -19.15812 -19.05085 -18.31089 -17.71458 -17.44630 -17.41290 -16.74588 -16.64609 -16.33151 -15.83682 -15.53736 -15.50796 -15.36314 -15.33940 -14.91984 -14.82433 -14.62071 -14.25975 -14.09380 -13.90095 -13.68086 -13.10318 -13.01948 -12.86970 -12.51438 -12.31334 -12.23217 -12.06364 -11.97527 -11.74080 -11.64469 -11.46123 -11.32023 -11.19793 -10.92115 -10.88406 -10.81524 -9.95118 -9.66730 -8.99487 -7.96102 -5.24998 -0.15029 0.45601 1.42417 1.46990 1.47960 1.58309 1.82215 1.92364 2.12178 2.46233 2.55741 3.34295 3.37794 3.63449 3.68991 3.72107 3.76914 3.87464 4.06195 4.14310 4.23020 4.29308 4.33247 4.41564 4.49956 4.58576 4.62735 4.71775 4.74598 4.83150 4.88024 4.89873 4.97022 5.05240 5.08133 5.19616 5.29420 5.37773 5.45689 5.49159 5.54045 5.57632 5.74594 6.25323 6.27147 6.29191 7.00565 7.08337 7.32486 8.10057 8.32128 9.28023 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011980 B = 0.002371 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.708645 B =11807.027425 C =13631.563953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.751 5.751 10 C 0.150 3.850 11 C -0.108 4.108 12 C -0.074 4.074 13 C -0.121 4.121 14 C 0.114 3.886 15 N -0.600 5.600 16 C 0.588 3.412 17 O -0.577 6.577 18 C -0.266 4.266 19 C 0.098 3.902 20 O -0.142 6.142 21 C -0.093 4.093 22 C 0.609 3.391 23 N -0.820 5.820 24 O -0.561 6.561 25 C -0.095 4.095 26 C 0.096 3.904 27 C -0.129 4.129 28 H 0.251 0.749 29 H 0.372 0.628 30 H 0.019 0.981 31 H 0.025 0.975 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.257 0.743 40 H 0.421 0.579 41 H 0.420 0.580 42 H 0.176 0.824 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.057 0.943 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.662 -27.816 -11.147 31.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.393 5.393 10 C 0.025 3.975 11 C -0.146 4.146 12 C -0.093 4.093 13 C -0.159 4.159 14 C -0.008 4.008 15 N -0.331 5.331 16 C 0.378 3.622 17 O -0.459 6.459 18 C -0.270 4.270 19 C 0.024 3.976 20 O -0.035 6.035 21 C -0.144 4.144 22 C 0.393 3.607 23 N -0.384 5.384 24 O -0.441 6.441 25 C -0.116 4.116 26 C -0.026 4.026 27 C -0.167 4.167 28 H 0.060 0.940 29 H 0.204 0.796 30 H 0.037 0.963 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.272 0.728 40 H 0.252 0.748 41 H 0.254 0.746 42 H 0.193 0.807 43 H 0.107 0.893 44 H 0.121 0.879 45 H 0.076 0.924 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.846 -27.862 -10.804 31.790 hybrid contribution -0.304 1.225 -0.082 1.265 sum 10.542 -26.637 -10.886 30.646 Atomic orbital electron populations 1.69831 1.06687 1.26034 1.59716 1.25617 0.96457 1.01268 1.03788 0.85050 0.78263 0.79611 0.76715 1.18917 1.21955 1.21951 1.19701 0.91536 0.85444 1.40935 0.90605 1.42672 1.05683 1.01565 1.89404 1.20896 0.94283 0.84726 0.97641 1.21625 0.97848 0.93683 1.01418 1.21022 0.97058 0.92866 0.98390 1.21894 0.97717 0.93203 1.03063 1.21702 0.93749 0.98414 0.86928 1.48021 1.39807 1.19326 1.25961 1.17488 0.82620 0.81100 0.80997 1.90769 1.38950 1.42448 1.73715 1.20567 0.96662 1.10865 0.98907 1.25605 0.89244 0.94660 0.88085 1.83964 1.21093 1.56524 1.41875 1.21776 0.92167 1.05996 0.94493 1.16557 0.83014 0.78623 0.82499 1.43534 1.21229 1.57081 1.16562 1.90953 1.53913 1.41719 1.57562 1.22282 0.93226 0.98589 0.97470 1.22460 0.91642 0.84754 1.03740 1.22073 0.99611 0.97271 0.97720 0.93992 0.79637 0.96321 0.95733 0.93018 0.92288 0.89910 0.92507 0.89432 0.89679 0.89536 0.72768 0.74769 0.74648 0.80724 0.89251 0.87947 0.92369 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.54 13.06 21.65 0.28 -60.26 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 3 Si 0.97 46.68 29.55 68.60 2.03 48.70 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.24 -13.93 9.99 84.04 0.84 -13.09 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.75 -39.12 5.60 -343.44 -1.92 -41.04 16 10 C 0.15 5.95 6.02 86.38 0.52 6.47 16 11 C -0.11 -3.35 4.80 30.60 0.15 -3.20 16 12 C -0.07 -1.70 2.15 -10.77 -0.02 -1.73 16 13 C -0.12 -2.45 5.36 30.67 0.16 -2.29 16 14 C 0.11 2.19 6.44 86.36 0.56 2.74 16 15 N -0.60 -12.13 2.97 -821.85 -2.44 -14.57 16 16 C 0.59 13.17 7.64 86.68 0.66 13.83 16 17 O -0.58 -16.24 16.44 -4.04 -0.07 -16.30 16 18 C -0.27 -4.62 5.60 -20.08 -0.11 -4.73 16 19 C 0.10 1.14 12.04 67.72 0.82 1.95 16 20 O -0.14 -1.58 10.33 -0.78 -0.01 -1.59 16 21 C -0.09 -1.40 7.09 24.00 0.17 -1.23 16 22 C 0.61 9.63 8.06 86.47 0.70 10.33 16 23 N -0.82 -5.66 8.87 -176.32 -1.56 -7.22 16 24 O -0.56 -13.50 17.68 -4.29 -0.08 -13.57 16 25 C -0.10 -1.59 8.14 22.63 0.18 -1.41 16 26 C 0.10 1.71 5.28 86.51 0.46 2.16 16 27 C -0.13 -2.80 5.16 30.82 0.16 -2.64 16 28 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 29 H 0.37 20.64 7.67 -92.71 -0.71 19.93 16 30 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.02 0.96 6.53 -2.38 -0.02 0.95 16 32 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 1.81 7.00 -2.39 -0.02 1.79 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.26 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.42 0.74 8.57 -92.71 -0.79 -0.06 16 41 H 0.42 1.72 8.93 -92.70 -0.83 0.90 16 42 H 0.18 2.82 6.42 -2.91 -0.02 2.80 16 43 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.10 1.72 4.07 -2.38 -0.01 1.71 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.08 1.85 6.50 -2.39 -0.02 1.83 16 Total: -1.00 -78.62 378.25 0.66 -77.96 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -1.28 Total: 24.88 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 5.70 Total: 3.00 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -5.64 Total: -123.09 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.15 Total: -31.46 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -78.62 0.66 -77.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495422239.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.440 kcal (2) G-P(sol) polarization free energy of solvation -78.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds