Wall clock time and date at job start Tue Mar 31 2020 18:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 120.00209 * 2 1 4 4 H 1.48504 * 109.47041 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47250 * 120.00017 * 3 2 1 6 6 H 1.48500 * 109.47349 * 240.00350 * 3 2 1 7 7 C 1.38809 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00286 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99926 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47197 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47142 * 174.91805 * 11 10 9 13 13 H 1.08997 * 109.58615 * 298.56660 * 12 11 10 14 14 C 1.53196 * 109.58363 * 58.99478 * 12 11 10 15 15 C 1.53037 * 109.31089 * 174.41894 * 14 12 11 16 16 C 1.53047 * 109.54136 * 298.63806 * 15 14 12 17 17 C 1.53191 * 109.31192 * 61.36270 * 16 15 14 18 18 N 1.46926 * 109.58325 * 178.28418 * 12 11 10 19 19 C 1.34776 * 120.63327 * 6.62575 * 18 12 11 20 20 O 1.21610 * 120.00077 * 4.52130 * 19 18 12 21 21 C 1.47293 * 119.99684 * 184.52291 * 19 18 12 22 22 C 1.36571 * 125.80016 * 173.10824 * 21 19 18 23 23 C 1.40059 * 106.92465 * 179.97438 * 22 21 19 24 24 C 1.36569 * 106.92559 * 359.97438 * 23 22 21 25 25 C 1.47294 * 125.80561 * 179.97438 * 24 23 22 26 26 N 1.34777 * 119.99954 * 179.97438 * 25 24 23 27 27 O 1.21607 * 120.00161 * 0.02562 * 25 24 23 28 28 O 1.34546 * 125.80796 * 352.78952 * 21 19 18 29 29 H 0.96993 * 119.99706 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00023 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47615 * 300.00464 * 10 9 7 32 32 H 1.09006 * 109.46846 * 60.00680 * 10 9 7 33 33 H 1.08995 * 109.47358 * 294.92457 * 11 10 9 34 34 H 1.09005 * 109.46796 * 54.92213 * 11 10 9 35 35 H 1.08991 * 109.49838 * 294.37236 * 14 12 11 36 36 H 1.09000 * 109.49630 * 54.46970 * 14 12 11 37 37 H 1.08997 * 109.46360 * 178.61397 * 15 14 12 38 38 H 1.09002 * 109.46115 * 58.65251 * 15 14 12 39 39 H 1.09002 * 109.49074 * 301.41147 * 16 15 14 40 40 H 1.08997 * 109.49398 * 181.31922 * 16 15 14 41 41 H 1.08996 * 109.58334 * 185.58356 * 17 16 15 42 42 H 1.08996 * 109.70099 * 65.22477 * 17 16 15 43 43 H 1.07995 * 126.54150 * 359.95219 * 22 21 19 44 44 H 1.07998 * 126.53565 * 180.02562 * 23 22 21 45 45 H 0.97002 * 120.00062 * 0.02562 * 26 25 24 46 46 H 0.97002 * 120.00308 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 1.2124 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0008 12 6 1.8243 -6.1411 -0.1297 13 1 2.3689 -6.1586 -1.0737 14 6 2.8074 -6.2836 1.0365 15 6 3.4632 -7.6652 0.9796 16 6 2.3899 -8.7474 1.1175 17 6 1.4021 -8.6327 -0.0478 18 7 0.8751 -7.2618 -0.0879 19 6 -0.4537 -7.0366 -0.0867 20 8 -0.8784 -5.9030 -0.2033 21 6 -1.3914 -8.1634 0.0560 22 6 -2.7452 -8.0622 0.2051 23 6 -3.2433 -9.3675 0.3035 24 6 -2.1724 -10.2099 0.2096 25 6 -2.2257 -11.6808 0.2637 26 7 -1.0911 -12.4006 0.1581 27 8 -3.2935 -12.2459 0.4026 28 8 -1.0607 -9.4676 0.0555 29 1 -0.4849 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0002 31 1 2.6841 -3.7142 -0.8921 32 1 2.6853 -3.7150 0.8879 33 1 0.4996 -4.8147 0.9318 34 1 0.3778 -4.7119 -0.8410 35 1 3.5748 -5.5133 0.9617 36 1 2.2717 -6.1738 1.9794 37 1 4.1814 -7.7601 1.7940 38 1 3.9780 -7.7838 0.0261 39 1 1.8582 -8.6143 2.0597 40 1 2.8603 -9.7305 1.1004 41 1 0.5817 -9.3354 0.0982 42 1 1.9120 -8.8558 -0.9849 43 1 -3.3217 -7.1497 0.2407 44 1 -4.2772 -9.6534 0.4287 45 1 -0.2394 -11.9499 0.0469 46 1 -1.1262 -13.3693 0.1940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496401059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:37 Heat of formation + Delta-G solvation = -22.827854 kcal Electronic energy + Delta-G solvation = -29273.952946 eV Core-core repulsion = 25166.509322 eV Total energy + Delta-G solvation = -4107.443624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.25989 -40.53228 -39.62791 -37.64262 -35.23914 -34.43344 -33.68254 -33.01810 -32.85425 -30.76918 -30.27651 -27.92508 -25.86962 -24.50541 -24.08000 -22.94673 -21.99680 -21.48267 -20.89710 -20.63054 -19.89314 -18.70555 -17.58636 -17.31363 -17.03710 -16.81583 -16.28297 -15.34356 -15.25080 -14.90198 -14.70535 -14.69259 -14.61482 -14.13976 -13.85080 -13.69944 -13.49213 -13.33993 -13.18827 -13.09138 -12.98460 -12.70982 -12.09499 -11.45107 -11.43752 -11.12749 -10.99997 -10.94424 -10.82345 -10.72164 -10.52346 -10.48576 -10.41687 -10.35183 -10.00226 -9.60845 -9.16978 -9.14391 -8.78711 -8.67979 -6.81027 -5.66553 -2.95060 0.28217 1.59644 1.90105 2.66422 2.67607 2.93904 3.00481 3.49025 3.52637 3.54453 4.02232 4.36294 4.48672 4.57302 4.64438 4.66335 4.72364 4.90774 4.98446 5.09762 5.14093 5.23393 5.40165 5.46156 5.52377 5.61504 5.64836 5.67128 5.73640 5.86352 5.88666 5.91474 6.05064 6.06422 6.17080 6.23702 6.31035 6.36249 6.51266 6.58617 6.72488 7.01777 7.07498 7.20299 7.55412 7.76373 7.93053 8.52460 9.62841 10.24166 10.58840 11.56306 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019004 B = 0.002549 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.006723 B =10982.664085 C =12312.205168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.238 4.238 8 H 0.068 0.932 9 N -0.731 5.731 10 C 0.150 3.850 11 C -0.121 4.121 12 C 0.153 3.847 13 H 0.078 0.922 14 C -0.134 4.134 15 C -0.121 4.121 16 C -0.134 4.134 17 C 0.090 3.910 18 N -0.597 5.597 19 C 0.591 3.409 20 O -0.483 6.483 21 C -0.029 4.029 22 C -0.136 4.136 23 C -0.120 4.120 24 C -0.074 4.074 25 C 0.611 3.389 26 N -0.842 5.842 27 O -0.518 6.518 28 O -0.149 6.149 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.013 0.987 32 H 0.016 0.984 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.172 0.828 44 H 0.168 0.832 45 H 0.407 0.593 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.148 -28.881 0.901 28.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.022 3.978 11 C -0.159 4.159 12 C 0.051 3.949 13 H 0.096 0.904 14 C -0.172 4.172 15 C -0.159 4.159 16 C -0.172 4.172 17 C -0.032 4.032 18 N -0.330 5.330 19 C 0.376 3.624 20 O -0.358 6.358 21 C -0.083 4.083 22 C -0.157 4.157 23 C -0.140 4.140 24 C -0.126 4.126 25 C 0.395 3.605 26 N -0.406 5.406 27 O -0.395 6.395 28 O -0.047 6.047 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.091 0.909 43 H 0.189 0.811 44 H 0.185 0.815 45 H 0.236 0.764 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.596 -28.450 0.893 28.509 hybrid contribution 0.528 0.703 0.022 0.880 sum 2.124 -27.747 0.914 27.843 Atomic orbital electron populations 1.69672 1.05070 1.25614 1.57754 1.24754 0.95521 0.97637 1.03277 0.86271 0.78483 0.83689 0.77758 1.21717 1.21351 1.21344 1.19189 0.90911 0.84284 1.42575 0.91358 1.42346 1.06048 0.99854 1.89281 1.20764 0.93563 0.86238 0.97250 1.22291 0.97851 0.90912 1.04818 1.21428 0.89227 0.85664 0.98594 0.90445 1.22074 0.98965 0.97275 0.98859 1.21557 0.97467 0.94603 1.02267 1.21921 0.97124 0.99535 0.98623 1.22313 0.98685 0.82968 0.99247 1.48092 1.04787 1.07993 1.72152 1.16999 0.81338 0.85856 0.78162 1.91065 1.77029 1.19212 1.48494 1.22929 0.95768 0.81183 1.08378 1.22053 0.92677 0.99223 1.01720 1.22004 1.00272 0.91292 1.00477 1.22407 0.86019 0.92221 1.11993 1.16637 0.84464 0.83258 0.76133 1.43683 1.09401 1.11340 1.76167 1.90929 1.29141 1.69695 1.49709 1.84202 1.32744 1.17097 1.70640 0.93525 0.78068 0.96874 0.96618 0.91249 0.88846 0.89580 0.91258 0.91531 0.91684 0.91412 0.90724 0.87823 0.90859 0.81064 0.81455 0.76393 0.75720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.43 13.06 55.49 0.72 -28.71 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 23.04 29.55 -169.99 -5.02 18.01 16 4 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -19.76 5.60 -59.91 -0.34 -20.09 16 10 C 0.15 3.15 5.73 -4.04 -0.02 3.12 16 11 C -0.12 -2.16 3.28 -26.73 -0.09 -2.25 16 12 C 0.15 2.01 3.03 -67.60 -0.20 1.80 16 13 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.13 -1.51 4.82 -26.61 -0.13 -1.64 16 15 C -0.12 -0.98 5.88 -26.69 -0.16 -1.14 16 16 C -0.13 -0.92 6.08 -26.61 -0.16 -1.08 16 17 C 0.09 0.70 6.32 -3.71 -0.02 0.68 16 18 N -0.60 -6.99 2.97 -166.53 -0.49 -7.49 16 19 C 0.59 8.13 7.54 -12.58 -0.09 8.04 16 20 O -0.48 -8.49 12.39 5.27 0.07 -8.43 16 21 C -0.03 -0.33 6.87 -36.50 -0.25 -0.58 16 22 C -0.14 -1.47 10.60 -39.50 -0.42 -1.89 16 23 C -0.12 -1.15 10.60 -39.50 -0.42 -1.57 16 24 C -0.07 -0.68 7.14 -36.50 -0.26 -0.94 16 25 C 0.61 5.23 8.08 -12.58 -0.10 5.13 16 26 N -0.84 -3.61 8.87 30.40 0.27 -3.34 16 27 O -0.52 -6.20 17.70 5.27 0.09 -6.10 16 28 O -0.15 -1.33 6.81 4.36 0.03 -1.30 16 29 H 0.25 7.75 8.31 -40.82 -0.34 7.42 16 30 H 0.39 11.16 7.67 -40.82 -0.31 10.84 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.02 0.33 6.84 -51.93 -0.36 -0.03 16 33 H 0.07 1.35 7.22 -51.93 -0.37 0.98 16 34 H 0.09 1.89 6.25 -51.93 -0.32 1.56 16 35 H 0.09 1.02 6.86 -51.93 -0.36 0.66 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.10 0.73 3.75 -55.41 -0.21 0.52 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.17 1.37 8.06 -52.49 -0.42 0.94 16 45 H 0.41 0.89 8.59 -40.82 -0.35 0.54 16 46 H 0.41 1.08 8.93 -40.82 -0.36 0.71 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -36.20 373.24 -8.05 -44.24 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.42 Total: 7.58 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.58 Total: 0.01 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.16 Total: -59.63 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.19 Total: -15.83 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.20 -8.05 -44.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496401059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.414 kcal (2) G-P(sol) polarization free energy of solvation -36.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds