Wall clock time and date at job start Tue Mar 31 2020 18:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.43783 * 307.54183 * 11 10 9 13 13 C 1.54890 * 110.48670 * 70.22087 * 11 10 9 14 14 C 1.54888 * 102.74996 * 156.61991 * 13 11 10 15 15 C 1.54270 * 104.19756 * 322.06245 * 14 13 11 16 16 C 1.53874 * 106.59709 * 23.60720 * 15 14 13 17 17 H 1.08998 * 110.07122 * 240.69625 * 16 15 14 18 18 N 1.46499 * 110.03422 * 119.28333 * 16 15 14 19 19 C 1.34780 * 119.99469 * 87.83420 * 18 16 15 20 20 O 1.21497 * 120.00535 * 359.97438 * 19 18 16 21 21 C 1.48336 * 119.99607 * 180.02562 * 19 18 16 22 22 N 1.31600 * 127.15835 * 0.02562 * 21 19 18 23 23 O 1.21564 * 111.54657 * 179.97438 * 22 21 19 24 24 C 1.32814 * 111.52126 * 359.96900 * 23 22 21 25 25 C 1.35711 * 106.69776 * 359.79988 * 24 23 22 26 26 C 1.50045 * 123.86032 * 179.42824 * 25 24 23 27 27 O 1.43619 * 107.88317 * 345.87462 * 26 25 24 28 28 C 1.42986 * 114.38344 * 49.77365 * 27 26 25 29 29 C 1.50658 * 130.83236 * 180.18912 * 24 23 22 30 30 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 33 33 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 34 34 H 1.08998 * 110.75888 * 274.94005 * 13 11 10 35 35 H 1.09004 * 110.75395 * 38.30810 * 13 11 10 36 36 H 1.08998 * 110.49376 * 203.38070 * 14 13 11 37 37 H 1.09001 * 110.59695 * 80.79264 * 14 13 11 38 38 H 1.09001 * 110.03076 * 264.32096 * 15 14 13 39 39 H 1.09001 * 110.07650 * 142.91446 * 15 14 13 40 40 H 0.96991 * 120.00494 * 267.83457 * 18 16 15 41 41 H 1.08995 * 109.95650 * 226.15913 * 26 25 24 42 42 H 1.08997 * 109.56457 * 105.36360 * 26 25 24 43 43 H 1.08999 * 109.40612 * 169.44366 * 28 27 26 44 44 H 1.09008 * 109.33019 * 49.65999 * 28 27 26 45 45 H 1.08999 * 109.82325 * 283.57576 * 29 24 23 46 46 H 1.08998 * 109.82666 * 44.43256 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.3433 -4.7047 0.8074 13 6 0.3391 -4.9124 -1.3679 14 6 -0.1114 -6.3935 -1.4159 15 6 1.0600 -7.1663 -0.7751 16 6 1.8074 -6.1656 0.1237 17 1 2.8377 -6.0560 -0.2146 18 7 1.7822 -6.6244 1.5147 19 6 2.7414 -7.4561 1.9673 20 8 3.6266 -7.8256 1.2217 21 6 2.7157 -7.9212 3.3756 22 7 1.8292 -7.6134 4.2983 23 8 2.0808 -8.1547 5.3573 24 6 3.1770 -8.9000 5.2752 25 6 3.6302 -8.7880 4.0010 26 6 4.8651 -9.4700 3.4898 27 8 5.6097 -9.9418 4.6237 28 6 4.8372 -10.6865 5.5688 29 6 3.8706 -9.7491 6.3086 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 2.6855 -3.7140 -0.8911 33 1 2.6842 -3.7148 0.8888 34 1 -0.5226 -4.2454 -1.3939 35 1 1.0253 -4.6907 -2.1853 36 1 -0.2609 -6.7137 -2.4470 37 1 -1.0240 -6.5357 -0.8371 38 1 1.7275 -7.5426 -1.5504 39 1 0.6794 -7.9938 -0.1765 40 1 1.0754 -6.3298 2.1099 41 1 5.4696 -8.7656 2.9185 42 1 4.5821 -10.3118 2.8579 43 1 5.5045 -11.1602 6.2889 44 1 4.2673 -11.4536 5.0443 45 1 4.4269 -9.1129 6.9969 46 1 3.1351 -10.3351 6.8598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496918271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:27 Heat of formation + Delta-G solvation = -12.616458 kcal Electronic energy + Delta-G solvation = -28866.346335 eV Core-core repulsion = 24759.345510 eV Total energy + Delta-G solvation = -4107.000825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.47268 -40.09799 -39.30168 -38.03636 -34.54849 -34.42869 -33.77909 -33.42226 -31.40879 -31.01833 -28.63566 -27.96298 -26.84720 -24.95721 -24.50629 -24.01705 -22.11688 -21.53514 -20.78413 -20.09801 -19.57774 -18.27705 -18.17221 -17.30148 -16.89532 -16.58974 -16.34944 -15.89634 -15.30642 -15.23785 -14.76549 -14.67295 -14.37041 -14.10361 -13.99818 -13.69035 -13.43989 -13.27124 -13.19214 -12.84847 -12.25128 -12.16385 -11.93438 -11.81720 -11.60272 -11.37922 -10.98636 -10.86092 -10.78079 -10.73507 -10.54442 -10.42143 -10.34981 -10.32954 -10.28364 -10.00853 -9.70226 -9.55562 -9.12026 -8.85697 -6.91075 -5.75479 -3.03949 0.77765 1.22955 2.39038 2.80019 2.95980 3.21870 3.45392 3.49424 3.50654 3.69999 4.01940 4.22202 4.37270 4.50382 4.55499 4.61690 4.70724 4.78461 4.88509 4.94778 5.00313 5.08781 5.11740 5.25016 5.34993 5.42442 5.53788 5.57750 5.61370 5.63055 5.72966 5.79114 5.87728 6.01944 6.09516 6.19218 6.26046 6.46743 6.51214 6.54002 6.55434 6.76752 6.87810 7.26195 7.64229 7.70993 7.94489 8.43510 9.54748 10.12045 10.47336 11.47385 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.002563 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.199471 B =10923.738475 C =11999.059503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.161 3.839 11 C -0.103 4.103 12 H 0.080 0.920 13 C -0.110 4.110 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.145 3.855 17 H 0.098 0.902 18 N -0.699 5.699 19 C 0.598 3.402 20 O -0.522 6.522 21 C -0.001 4.001 22 N -0.332 5.332 23 O 0.135 5.865 24 C -0.030 4.030 25 C -0.201 4.201 26 C 0.141 3.859 27 O -0.374 6.374 28 C 0.060 3.940 29 C -0.069 4.069 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.022 0.978 33 H 0.017 0.983 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.407 0.593 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.624 -26.023 10.068 28.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.033 3.967 11 C -0.122 4.122 12 H 0.099 0.901 13 C -0.147 4.147 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.041 3.959 17 H 0.116 0.884 18 N -0.350 5.350 19 C 0.381 3.619 20 O -0.396 6.396 21 C -0.160 4.160 22 N -0.034 5.034 23 O 0.062 5.938 24 C -0.095 4.095 25 C -0.207 4.207 26 C 0.064 3.936 27 O -0.292 6.292 28 C -0.017 4.017 29 C -0.108 4.108 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.243 0.757 41 H 0.140 0.860 42 H 0.096 0.904 43 H 0.132 0.868 44 H 0.079 0.921 45 H 0.124 0.876 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.496 -25.318 9.463 27.400 hybrid contribution -0.027 0.836 0.223 0.865 sum 4.470 -24.482 9.686 26.705 Atomic orbital electron populations 1.69644 1.05085 1.25744 1.57848 1.24724 0.95528 0.97656 1.03058 0.86264 0.78523 0.83528 0.77871 1.21253 1.21677 1.21296 1.19185 0.91007 0.84190 1.42632 0.91312 1.42306 1.05802 0.99823 1.89493 1.20681 0.92885 0.85197 0.97889 1.22451 0.97993 0.92977 0.98775 0.90145 1.22453 1.00569 0.95216 0.96507 1.22388 0.97530 0.95950 1.00397 1.22547 0.97682 0.97817 0.98927 1.21857 1.01608 0.93351 0.79108 0.88423 1.46081 1.28156 1.47045 1.13723 1.16814 0.82342 0.79258 0.83443 1.90787 1.35957 1.57101 1.55795 1.22919 0.95089 1.01174 0.96783 1.74713 1.21267 1.15307 0.92143 1.84660 1.35807 1.44833 1.28471 1.24014 0.89628 0.98314 0.97518 1.21366 1.01904 1.03333 0.94068 1.20994 0.87875 0.97504 0.87182 1.88147 1.35305 1.72133 1.33631 1.22746 0.94300 0.92444 0.92191 1.21069 0.97736 0.96707 0.95244 0.93489 0.78254 0.95999 0.96566 0.90573 0.90899 0.91668 0.91803 0.91033 0.91775 0.75749 0.85963 0.90405 0.86817 0.92052 0.87559 0.87602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -18.64 5.49 -59.91 -0.33 -18.96 16 10 C 0.16 3.31 5.54 -4.04 -0.02 3.29 16 11 C -0.10 -1.65 2.59 -88.96 -0.23 -1.88 16 12 H 0.08 1.31 7.74 -51.93 -0.40 0.91 16 13 C -0.11 -1.63 6.19 -24.74 -0.15 -1.79 16 14 C -0.12 -1.50 6.83 -25.07 -0.17 -1.67 16 15 C -0.13 -1.61 6.59 -25.61 -0.17 -1.78 16 16 C 0.14 2.06 2.82 -66.81 -0.19 1.87 16 17 H 0.10 1.52 7.26 -51.93 -0.38 1.15 16 18 N -0.70 -9.63 4.98 -53.51 -0.27 -9.89 16 19 C 0.60 8.70 7.85 -12.10 -0.09 8.60 16 20 O -0.52 -8.48 15.95 5.37 0.09 -8.39 16 21 C 0.00 -0.02 7.18 -82.89 -0.60 -0.61 16 22 N -0.33 -4.29 11.90 33.26 0.40 -3.90 16 23 O 0.13 1.48 11.17 20.05 0.22 1.70 16 24 C -0.03 -0.27 7.50 -35.23 -0.26 -0.54 16 25 C -0.20 -2.26 6.15 -104.93 -0.65 -2.90 16 26 C 0.14 1.39 6.67 35.69 0.24 1.63 16 27 O -0.37 -3.33 10.76 -35.23 -0.38 -3.71 16 28 C 0.06 0.30 6.77 37.49 0.25 0.56 16 29 C -0.07 -0.34 6.56 -27.57 -0.18 -0.52 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.38 10.18 7.64 -40.82 -0.31 9.87 16 32 H 0.02 0.46 8.02 -51.93 -0.42 0.04 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.12 7.97 -51.93 -0.41 0.71 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.77 7.92 -51.93 -0.41 0.36 16 40 H 0.41 5.29 8.13 -40.82 -0.33 4.96 16 41 H 0.12 1.31 8.00 -51.93 -0.42 0.89 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.06 0.26 8.10 -51.92 -0.42 -0.16 16 45 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -33.57 379.08 -8.17 -41.75 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.85 Total: 8.89 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.47 Total: -3.22 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.52 Total: -60.49 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.07 Total: -10.40 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.57 -8.17 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496918271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.129 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds