Wall clock time and date at job start Tue Mar 31 2020 18:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.43783 * 307.54183 * 11 10 9 13 13 C 1.54890 * 110.48670 * 70.22087 * 11 10 9 14 14 C 1.54888 * 102.74996 * 156.61991 * 13 11 10 15 15 C 1.54270 * 104.19756 * 322.06245 * 14 13 11 16 16 C 1.53874 * 106.59709 * 23.60720 * 15 14 13 17 17 H 1.08998 * 110.07122 * 240.69625 * 16 15 14 18 18 N 1.46499 * 110.03422 * 119.28333 * 16 15 14 19 19 C 1.34780 * 119.99469 * 87.83420 * 18 16 15 20 20 O 1.21497 * 120.00535 * 359.97438 * 19 18 16 21 21 C 1.48336 * 119.99607 * 180.02562 * 19 18 16 22 22 N 1.31600 * 127.15835 * 0.02562 * 21 19 18 23 23 O 1.21564 * 111.54657 * 179.97438 * 22 21 19 24 24 C 1.32814 * 111.52126 * 359.96900 * 23 22 21 25 25 C 1.35711 * 106.69776 * 359.79988 * 24 23 22 26 26 C 1.50045 * 123.86032 * 179.42824 * 25 24 23 27 27 O 1.43619 * 107.88317 * 345.87462 * 26 25 24 28 28 C 1.42986 * 114.38344 * 49.77365 * 27 26 25 29 29 C 1.50658 * 130.83236 * 180.18912 * 24 23 22 30 30 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 33 33 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 34 34 H 1.08998 * 110.75888 * 274.94005 * 13 11 10 35 35 H 1.09004 * 110.75395 * 38.30810 * 13 11 10 36 36 H 1.08998 * 110.49376 * 203.38070 * 14 13 11 37 37 H 1.09001 * 110.59695 * 80.79264 * 14 13 11 38 38 H 1.09001 * 110.03076 * 264.32096 * 15 14 13 39 39 H 1.09001 * 110.07650 * 142.91446 * 15 14 13 40 40 H 0.96991 * 120.00494 * 267.83457 * 18 16 15 41 41 H 1.08995 * 109.95650 * 226.15913 * 26 25 24 42 42 H 1.08997 * 109.56457 * 105.36360 * 26 25 24 43 43 H 1.08999 * 109.40612 * 169.44366 * 28 27 26 44 44 H 1.09008 * 109.33019 * 49.65999 * 28 27 26 45 45 H 1.08999 * 109.82325 * 283.57576 * 29 24 23 46 46 H 1.08998 * 109.82666 * 44.43256 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.3433 -4.7047 0.8074 13 6 0.3391 -4.9124 -1.3679 14 6 -0.1114 -6.3935 -1.4159 15 6 1.0600 -7.1663 -0.7751 16 6 1.8074 -6.1656 0.1237 17 1 2.8377 -6.0560 -0.2146 18 7 1.7822 -6.6244 1.5147 19 6 2.7414 -7.4561 1.9673 20 8 3.6266 -7.8256 1.2217 21 6 2.7157 -7.9212 3.3756 22 7 1.8292 -7.6134 4.2983 23 8 2.0808 -8.1547 5.3573 24 6 3.1770 -8.9000 5.2752 25 6 3.6302 -8.7880 4.0010 26 6 4.8651 -9.4700 3.4898 27 8 5.6097 -9.9418 4.6237 28 6 4.8372 -10.6865 5.5688 29 6 3.8706 -9.7491 6.3086 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 2.6855 -3.7140 -0.8911 33 1 2.6842 -3.7148 0.8888 34 1 -0.5226 -4.2454 -1.3939 35 1 1.0253 -4.6907 -2.1853 36 1 -0.2609 -6.7137 -2.4470 37 1 -1.0240 -6.5357 -0.8371 38 1 1.7275 -7.5426 -1.5504 39 1 0.6794 -7.9938 -0.1765 40 1 1.0754 -6.3298 2.1099 41 1 5.4696 -8.7656 2.9185 42 1 4.5821 -10.3118 2.8579 43 1 5.5045 -11.1602 6.2889 44 1 4.2673 -11.4536 5.0443 45 1 4.4269 -9.1129 6.9969 46 1 3.1351 -10.3351 6.8598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496918271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:26 Heat of formation + Delta-G solvation = -36.051157 kcal Electronic energy + Delta-G solvation = -28867.362540 eV Core-core repulsion = 24759.345510 eV Total energy + Delta-G solvation = -4108.017030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.36060 -41.26486 -39.92948 -39.26821 -36.39258 -35.39995 -34.82111 -34.19350 -33.34276 -31.68358 -30.28372 -29.08222 -27.65189 -26.48485 -25.52095 -24.92624 -23.84949 -22.46424 -21.78402 -21.29210 -20.69143 -19.37976 -19.13425 -18.84810 -17.97552 -17.74213 -17.13987 -16.68872 -16.56976 -16.35037 -15.92979 -15.85509 -15.75850 -15.24585 -15.11766 -14.85645 -14.65750 -14.57255 -14.43685 -13.82241 -13.55402 -13.21477 -13.04148 -12.86092 -12.79397 -12.73944 -12.53831 -12.24016 -12.06027 -12.02709 -11.94147 -11.71511 -11.64991 -11.59137 -11.50264 -11.46378 -10.96475 -10.93692 -10.32090 -10.27958 -9.04486 -7.98713 -5.27855 -0.14269 0.39373 1.44244 1.47307 1.53572 1.60379 1.80335 1.88060 2.52517 2.57693 2.80897 3.31447 3.34589 3.41415 3.50360 3.59490 3.68409 3.82828 3.95297 4.08832 4.13656 4.21112 4.33703 4.34150 4.39782 4.42635 4.46930 4.51420 4.58214 4.65911 4.67290 4.78556 4.88777 4.92025 4.92467 4.98182 4.99593 5.10717 5.18807 5.28337 5.42098 5.42860 5.47072 6.00130 6.15074 6.23404 6.73048 6.86170 7.30133 8.03906 8.29785 9.24315 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.002563 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.199471 B =10923.738475 C =11999.059503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.973 3.027 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.070 0.930 9 N -0.739 5.739 10 C 0.163 3.837 11 C -0.093 4.093 12 H 0.078 0.922 13 C -0.109 4.109 14 C -0.112 4.112 15 C -0.123 4.123 16 C 0.151 3.849 17 H 0.082 0.918 18 N -0.697 5.697 19 C 0.597 3.403 20 O -0.544 6.544 21 C -0.022 4.022 22 N -0.351 5.351 23 O 0.139 5.861 24 C -0.014 4.014 25 C -0.222 4.222 26 C 0.146 3.854 27 O -0.390 6.390 28 C 0.052 3.948 29 C -0.067 4.067 30 H 0.253 0.747 31 H 0.376 0.624 32 H 0.021 0.979 33 H 0.005 0.995 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.411 0.589 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.145 0.855 44 H 0.070 0.930 45 H 0.121 0.879 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.013 -27.791 11.269 30.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.383 4.383 8 H 0.088 0.912 9 N -0.382 5.382 10 C 0.036 3.964 11 C -0.112 4.112 12 H 0.096 0.904 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.161 4.161 16 C 0.047 3.953 17 H 0.101 0.899 18 N -0.347 5.347 19 C 0.381 3.619 20 O -0.421 6.421 21 C -0.179 4.179 22 N -0.053 5.053 23 O 0.066 5.934 24 C -0.079 4.079 25 C -0.228 4.228 26 C 0.070 3.930 27 O -0.308 6.308 28 C -0.025 4.025 29 C -0.104 4.104 30 H 0.062 0.938 31 H 0.209 0.791 32 H 0.039 0.961 33 H 0.023 0.977 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.247 0.753 41 H 0.122 0.878 42 H 0.103 0.897 43 H 0.163 0.837 44 H 0.089 0.911 45 H 0.139 0.861 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.897 -27.109 10.663 29.539 hybrid contribution -0.090 1.316 -0.050 1.320 sum 4.807 -25.792 10.614 28.302 Atomic orbital electron populations 1.69795 1.06472 1.26273 1.59124 1.25545 0.96451 1.00995 1.03399 0.85223 0.77282 0.79174 0.78153 1.20338 1.21738 1.20607 1.19556 0.91345 0.85529 1.41852 0.91218 1.42454 1.05606 1.00783 1.89362 1.20766 0.93585 0.85059 0.96991 1.22295 0.97045 0.92180 0.99710 0.90359 1.22402 0.99704 0.97304 0.95261 1.22323 0.97565 0.93227 1.01817 1.22486 0.97641 0.97319 0.98672 1.21714 1.00757 0.92945 0.79896 0.89946 1.46053 1.28191 1.46866 1.13616 1.17007 0.81889 0.78956 0.84024 1.90763 1.36708 1.58004 1.56600 1.22851 0.96345 1.02442 0.96276 1.74692 1.21802 1.16211 0.92621 1.84627 1.36384 1.44706 1.27652 1.24815 0.88227 0.96957 0.97896 1.21606 1.02412 1.03783 0.94966 1.20846 0.87112 0.97320 0.87770 1.88125 1.36148 1.72682 1.33885 1.23121 0.94935 0.92269 0.92129 1.21399 0.98129 0.96528 0.94364 0.93840 0.79120 0.96121 0.97714 0.91972 0.91583 0.89707 0.90783 0.90275 0.90968 0.75315 0.87787 0.89714 0.83730 0.91119 0.86117 0.84178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.69 13.06 21.65 0.28 -59.41 16 2 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 3 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.25 -14.52 9.99 84.03 0.84 -13.68 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -38.64 5.49 -343.45 -1.89 -40.52 16 10 C 0.16 6.86 5.54 86.38 0.48 7.34 16 11 C -0.09 -3.02 2.59 -9.72 -0.03 -3.05 16 12 H 0.08 2.59 7.74 -2.38 -0.02 2.58 16 13 C -0.11 -3.22 6.19 31.89 0.20 -3.02 16 14 C -0.11 -2.49 6.83 31.67 0.22 -2.27 16 15 C -0.12 -2.85 6.59 31.32 0.21 -2.65 16 16 C 0.15 4.30 2.82 45.72 0.13 4.43 16 17 H 0.08 2.63 7.26 -2.39 -0.02 2.61 16 18 N -0.70 -19.42 4.98 -441.50 -2.20 -21.62 16 19 C 0.60 17.72 7.85 86.93 0.68 18.41 16 20 O -0.54 -18.15 15.95 -3.70 -0.06 -18.21 16 21 C -0.02 -0.59 7.18 42.46 0.30 -0.29 16 22 N -0.35 -9.04 11.90 -48.98 -0.58 -9.62 16 23 O 0.14 2.91 11.17 81.72 0.91 3.82 16 24 C -0.01 -0.23 7.50 25.09 0.19 -0.04 16 25 C -0.22 -4.88 6.15 -20.06 -0.12 -5.00 16 26 C 0.15 2.86 6.67 71.03 0.47 3.34 16 27 O -0.39 -6.37 10.76 -148.98 -1.60 -7.98 16 28 C 0.05 0.37 6.77 72.20 0.49 0.85 16 29 C -0.07 -0.43 6.56 30.05 0.20 -0.23 16 30 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.38 20.54 7.64 -92.71 -0.71 19.83 16 32 H 0.02 0.89 8.02 -2.39 -0.02 0.87 16 33 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 2.04 7.97 -2.38 -0.02 2.02 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 1.60 7.92 -2.39 -0.02 1.58 16 40 H 0.41 10.83 8.13 -92.72 -0.75 10.08 16 41 H 0.10 2.35 8.00 -2.39 -0.02 2.33 16 42 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.07 0.39 8.10 -2.38 -0.02 0.37 16 45 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.14 0.03 8.14 -2.39 -0.02 0.01 16 Total: -1.00 -73.49 379.08 1.17 -72.32 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: -0.44 Total: 31.68 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 4.72 Total: 0.42 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -4.39 Total: -131.17 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.75 Total: -22.36 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -73.49 1.17 -72.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496918271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.264 kcal (2) G-P(sol) polarization free energy of solvation -73.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds