Wall clock time and date at job start Tue Mar 31 2020 18:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00200 * 2 1 4 4 H 1.48506 * 109.47031 * 269.99778 * 3 2 1 5 5 H 1.48498 * 109.47010 * 29.99368 * 3 2 1 6 6 H 1.48492 * 109.47286 * 149.99664 * 3 2 1 7 7 C 1.38810 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99825 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00018 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99805 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47066 * 180.02562 * 10 9 7 12 12 H 1.09006 * 110.53447 * 307.61167 * 11 10 9 13 13 C 1.54889 * 110.48935 * 70.22167 * 11 10 9 14 14 C 1.54885 * 102.74804 * 156.62391 * 13 11 10 15 15 C 1.54272 * 104.19688 * 322.05650 * 14 13 11 16 16 C 1.53874 * 106.59521 * 23.61220 * 15 14 13 17 17 H 1.09007 * 110.03171 * 119.33080 * 16 15 14 18 18 N 1.46498 * 110.03522 * 240.71169 * 16 15 14 19 19 C 1.34777 * 119.99878 * 273.55224 * 18 16 15 20 20 O 1.21493 * 120.00441 * 359.97438 * 19 18 16 21 21 C 1.48335 * 119.99899 * 179.97438 * 19 18 16 22 22 N 1.31598 * 127.15512 * 359.97438 * 21 19 18 23 23 O 1.21569 * 111.54835 * 179.73632 * 22 21 19 24 24 C 1.32812 * 111.51526 * 0.37226 * 23 22 21 25 25 C 1.35713 * 106.70436 * 359.68522 * 24 23 22 26 26 C 1.50029 * 123.86729 * 180.11803 * 25 24 23 27 27 O 1.43614 * 107.82503 * 345.22466 * 26 25 24 28 28 C 1.42990 * 114.39335 * 50.02535 * 27 26 25 29 29 C 1.50666 * 130.83247 * 179.97438 * 24 23 22 30 30 H 0.97001 * 120.00101 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00034 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47107 * 60.00193 * 10 9 7 33 33 H 1.09002 * 109.47335 * 299.99565 * 10 9 7 34 34 H 1.09004 * 110.75266 * 38.30822 * 13 11 10 35 35 H 1.09002 * 110.91661 * 275.01350 * 13 11 10 36 36 H 1.09000 * 110.48724 * 203.38695 * 14 13 11 37 37 H 1.08993 * 110.48918 * 80.73671 * 14 13 11 38 38 H 1.08990 * 110.03428 * 264.32923 * 15 14 13 39 39 H 1.09000 * 110.06997 * 142.91849 * 15 14 13 40 40 H 0.96998 * 119.99668 * 93.54301 * 18 16 15 41 41 H 1.09000 * 109.79288 * 225.63861 * 26 25 24 42 42 H 1.09004 * 109.79174 * 104.80032 * 26 25 24 43 43 H 1.09004 * 109.40002 * 169.47861 * 28 27 26 44 44 H 1.08992 * 109.33034 * 49.68993 * 28 27 26 45 45 H 1.09002 * 109.81978 * 283.28338 * 29 24 23 46 46 H 1.08994 * 109.82247 * 44.14356 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0022 11 6 5.6163 -2.1914 0.0032 12 1 5.8791 -1.5094 -0.8055 13 6 6.0586 -1.6091 1.3686 14 6 7.5666 -1.9594 1.4173 15 6 7.6503 -3.3607 0.7776 16 6 6.4103 -3.5082 -0.1215 17 1 6.7157 -3.6643 -1.1562 18 7 5.5906 -4.6335 0.3346 19 6 5.8544 -5.8805 -0.1036 20 8 6.7716 -6.0713 -0.8771 21 6 5.0248 -7.0200 0.3586 22 7 4.0049 -6.9753 1.1890 23 8 3.5263 -8.0783 1.3681 24 6 4.1769 -9.0093 0.6797 25 6 5.1648 -8.3731 0.0005 26 6 6.1368 -9.0677 -0.9069 27 8 6.0540 -10.4771 -0.6436 28 6 4.7238 -11.0017 -0.6490 29 6 3.9573 -10.4967 0.5830 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3622 0.0014 32 1 3.8491 -3.0431 -0.8875 33 1 3.8485 -3.0419 0.8925 34 1 5.5232 -2.0920 2.1862 35 1 5.9118 -0.5294 1.3972 36 1 7.9182 -1.9894 2.4486 37 1 8.1443 -1.2400 0.8370 38 1 7.6422 -4.1264 1.5533 39 1 8.5575 -3.4452 0.1793 40 1 4.8581 -4.4811 0.9519 41 1 7.1477 -8.7134 -0.7055 42 1 5.8764 -8.8707 -1.9469 43 1 4.7640 -12.0908 -0.6290 44 1 4.2107 -10.6748 -1.5534 45 1 4.3367 -10.9855 1.4803 46 1 2.8938 -10.7066 0.4695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496918272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:30 Heat of formation + Delta-G solvation = -3.424607 kcal Electronic energy + Delta-G solvation = -29314.098930 eV Core-core repulsion = 25207.496694 eV Total energy + Delta-G solvation = -4106.602236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.39742 -40.22728 -39.26319 -38.13134 -34.62852 -34.38544 -33.76265 -33.37854 -31.60101 -30.96132 -29.11387 -28.06849 -26.80890 -24.95106 -24.52767 -24.14142 -22.07760 -21.46290 -20.53437 -20.37337 -19.46477 -18.29173 -18.13917 -17.59395 -17.21884 -16.48935 -15.99583 -15.91767 -15.25800 -15.15971 -15.04751 -14.72039 -14.45882 -14.09216 -14.05430 -13.92055 -13.65643 -13.27395 -13.21512 -12.68303 -12.51385 -12.17949 -11.88832 -11.81815 -11.61059 -11.53108 -11.05644 -11.03232 -10.93680 -10.67778 -10.58039 -10.51580 -10.44196 -10.34801 -10.27832 -10.12221 -9.61149 -9.49001 -9.15741 -8.92482 -7.26678 -5.78835 -3.14910 0.85760 1.28694 2.46624 2.83815 2.99074 3.26123 3.35010 3.37684 3.43280 3.75769 4.07590 4.27502 4.41723 4.48164 4.56878 4.60317 4.65118 4.69103 4.89791 4.94068 5.01499 5.13633 5.16726 5.24905 5.30493 5.40407 5.40674 5.50633 5.53695 5.60177 5.63087 5.68987 5.74006 5.80737 5.92486 5.94165 6.11701 6.31170 6.35752 6.44654 6.58410 6.58976 6.64176 7.29791 7.71913 7.96046 7.97695 8.39825 9.18574 9.90608 10.10332 11.39530 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013917 B = 0.002973 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.408818 B = 9416.599228 C =10873.730638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.089 0.911 9 N -0.752 5.752 10 C 0.167 3.833 11 C -0.111 4.111 12 H 0.091 0.909 13 C -0.117 4.117 14 C -0.124 4.124 15 C -0.131 4.131 16 C 0.149 3.851 17 H 0.094 0.906 18 N -0.700 5.700 19 C 0.600 3.400 20 O -0.526 6.526 21 C -0.004 4.004 22 N -0.327 5.327 23 O 0.138 5.862 24 C -0.031 4.031 25 C -0.202 4.202 26 C 0.142 3.858 27 O -0.376 6.376 28 C 0.060 3.940 29 C -0.069 4.069 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.028 0.972 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.412 0.588 41 H 0.121 0.879 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.555 -20.849 1.443 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.397 5.397 10 C 0.039 3.961 11 C -0.131 4.131 12 H 0.109 0.891 13 C -0.154 4.154 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.044 3.956 17 H 0.112 0.888 18 N -0.353 5.353 19 C 0.383 3.617 20 O -0.401 6.401 21 C -0.163 4.163 22 N -0.029 5.029 23 O 0.065 5.935 24 C -0.096 4.096 25 C -0.207 4.207 26 C 0.065 3.935 27 O -0.294 6.294 28 C -0.017 4.017 29 C -0.107 4.107 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.251 0.749 41 H 0.138 0.862 42 H 0.097 0.903 43 H 0.132 0.868 44 H 0.081 0.919 45 H 0.123 0.877 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.573 -20.103 1.565 24.879 hybrid contribution 0.167 1.196 -0.058 1.209 sum 14.740 -18.907 1.507 24.021 Atomic orbital electron populations 1.69706 1.05115 1.25843 1.57460 1.24674 0.95238 0.97214 1.01955 0.86538 0.79210 0.84939 0.77781 1.21074 1.21715 1.20282 1.19049 0.80583 0.94752 1.43141 0.89299 1.42659 1.04017 1.02014 1.91057 1.20563 0.87696 0.89527 0.98284 1.22544 0.96468 0.95108 0.98944 0.89117 1.22562 0.94631 1.01400 0.96856 1.22381 0.97163 0.96163 1.00507 1.22580 0.97607 0.97794 0.99028 1.21715 0.90133 0.84660 0.99090 0.88787 1.46177 1.35298 1.05868 1.47925 1.16810 0.82662 0.81491 0.80725 1.90768 1.30240 1.84223 1.34864 1.22875 0.97776 0.95374 1.00238 1.74766 1.10371 1.01284 1.16445 1.84684 1.45655 1.11107 1.52103 1.24019 0.94056 0.95095 0.96392 1.21336 1.01990 0.92267 1.05118 1.20973 0.98376 0.78395 0.95750 1.88123 1.26562 1.22312 1.92367 1.22749 0.83365 0.99847 0.95743 1.21059 1.03615 0.84088 1.01967 0.93033 0.80571 0.95401 0.95883 0.91105 0.91054 0.91685 0.91497 0.91425 0.91050 0.74929 0.86168 0.90322 0.86841 0.91945 0.87658 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.52 13.97 55.49 0.78 -28.75 16 2 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.89 22.10 27.74 -169.99 -4.71 17.39 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 7 C -0.25 -7.00 10.47 -15.06 -0.16 -7.16 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.75 -17.76 5.30 -59.91 -0.32 -18.08 16 10 C 0.17 3.19 4.72 -4.04 -0.02 3.17 16 11 C -0.11 -1.66 2.85 -88.96 -0.25 -1.91 16 12 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.12 -1.61 6.19 -24.74 -0.15 -1.77 16 14 C -0.12 -1.39 6.83 -25.07 -0.17 -1.56 16 15 C -0.13 -1.53 6.59 -25.61 -0.17 -1.70 16 16 C 0.15 2.00 3.10 -66.81 -0.21 1.79 16 17 H 0.09 1.30 7.61 -51.93 -0.39 0.91 16 18 N -0.70 -9.89 4.37 -53.51 -0.23 -10.12 16 19 C 0.60 8.85 7.84 -12.11 -0.09 8.75 16 20 O -0.53 -8.40 15.97 5.37 0.09 -8.32 16 21 C 0.00 -0.06 7.18 -82.90 -0.60 -0.66 16 22 N -0.33 -4.64 11.90 33.26 0.40 -4.24 16 23 O 0.14 1.67 11.17 20.05 0.22 1.89 16 24 C -0.03 -0.31 7.50 -35.23 -0.26 -0.57 16 25 C -0.20 -2.37 6.15 -104.93 -0.65 -3.01 16 26 C 0.14 1.43 6.67 35.68 0.24 1.67 16 27 O -0.38 -3.39 10.76 -35.23 -0.38 -3.77 16 28 C 0.06 0.34 6.77 37.49 0.25 0.59 16 29 C -0.07 -0.39 6.56 -27.57 -0.18 -0.57 16 30 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 31 H 0.36 8.27 5.50 -40.82 -0.22 8.05 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.02 0.45 6.39 -51.93 -0.33 0.12 16 34 H 0.07 1.02 7.96 -51.93 -0.41 0.61 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.81 7.92 -51.93 -0.41 0.40 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.41 5.99 6.27 -40.82 -0.26 5.74 16 41 H 0.12 1.25 8.00 -51.93 -0.42 0.83 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 45 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -34.11 372.34 -7.75 -41.86 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.69 Total: 9.40 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -2.51 Total: -2.89 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.62 Total: -61.19 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.07 Total: -10.20 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.11 -7.75 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496918272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.439 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds