Wall clock time and date at job start Tue Mar 31 2020 18:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00200 * 2 1 4 4 H 1.48506 * 109.47031 * 269.99778 * 3 2 1 5 5 H 1.48498 * 109.47010 * 29.99368 * 3 2 1 6 6 H 1.48492 * 109.47286 * 149.99664 * 3 2 1 7 7 C 1.38810 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99825 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00018 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99805 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47066 * 180.02562 * 10 9 7 12 12 H 1.09006 * 110.53447 * 307.61167 * 11 10 9 13 13 C 1.54889 * 110.48935 * 70.22167 * 11 10 9 14 14 C 1.54885 * 102.74804 * 156.62391 * 13 11 10 15 15 C 1.54272 * 104.19688 * 322.05650 * 14 13 11 16 16 C 1.53874 * 106.59521 * 23.61220 * 15 14 13 17 17 H 1.09007 * 110.03171 * 119.33080 * 16 15 14 18 18 N 1.46498 * 110.03522 * 240.71169 * 16 15 14 19 19 C 1.34777 * 119.99878 * 273.55224 * 18 16 15 20 20 O 1.21493 * 120.00441 * 359.97438 * 19 18 16 21 21 C 1.48335 * 119.99899 * 179.97438 * 19 18 16 22 22 N 1.31598 * 127.15512 * 359.97438 * 21 19 18 23 23 O 1.21569 * 111.54835 * 179.73632 * 22 21 19 24 24 C 1.32812 * 111.51526 * 0.37226 * 23 22 21 25 25 C 1.35713 * 106.70436 * 359.68522 * 24 23 22 26 26 C 1.50029 * 123.86729 * 180.11803 * 25 24 23 27 27 O 1.43614 * 107.82503 * 345.22466 * 26 25 24 28 28 C 1.42990 * 114.39335 * 50.02535 * 27 26 25 29 29 C 1.50666 * 130.83247 * 179.97438 * 24 23 22 30 30 H 0.97001 * 120.00101 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00034 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47107 * 60.00193 * 10 9 7 33 33 H 1.09002 * 109.47335 * 299.99565 * 10 9 7 34 34 H 1.09004 * 110.75266 * 38.30822 * 13 11 10 35 35 H 1.09002 * 110.91661 * 275.01350 * 13 11 10 36 36 H 1.09000 * 110.48724 * 203.38695 * 14 13 11 37 37 H 1.08993 * 110.48918 * 80.73671 * 14 13 11 38 38 H 1.08990 * 110.03428 * 264.32923 * 15 14 13 39 39 H 1.09000 * 110.06997 * 142.91849 * 15 14 13 40 40 H 0.96998 * 119.99668 * 93.54301 * 18 16 15 41 41 H 1.09000 * 109.79288 * 225.63861 * 26 25 24 42 42 H 1.09004 * 109.79174 * 104.80032 * 26 25 24 43 43 H 1.09004 * 109.40002 * 169.47861 * 28 27 26 44 44 H 1.08992 * 109.33034 * 49.68993 * 28 27 26 45 45 H 1.09002 * 109.81978 * 283.28338 * 29 24 23 46 46 H 1.08994 * 109.82247 * 44.14356 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0022 11 6 5.6163 -2.1914 0.0032 12 1 5.8791 -1.5094 -0.8055 13 6 6.0586 -1.6091 1.3686 14 6 7.5666 -1.9594 1.4173 15 6 7.6503 -3.3607 0.7776 16 6 6.4103 -3.5082 -0.1215 17 1 6.7157 -3.6643 -1.1562 18 7 5.5906 -4.6335 0.3346 19 6 5.8544 -5.8805 -0.1036 20 8 6.7716 -6.0713 -0.8771 21 6 5.0248 -7.0200 0.3586 22 7 4.0049 -6.9753 1.1890 23 8 3.5263 -8.0783 1.3681 24 6 4.1769 -9.0093 0.6797 25 6 5.1648 -8.3731 0.0005 26 6 6.1368 -9.0677 -0.9069 27 8 6.0540 -10.4771 -0.6436 28 6 4.7238 -11.0017 -0.6490 29 6 3.9573 -10.4967 0.5830 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3622 0.0014 32 1 3.8491 -3.0431 -0.8875 33 1 3.8485 -3.0419 0.8925 34 1 5.5232 -2.0920 2.1862 35 1 5.9118 -0.5294 1.3972 36 1 7.9182 -1.9894 2.4486 37 1 8.1443 -1.2400 0.8370 38 1 7.6422 -4.1264 1.5533 39 1 8.5575 -3.4452 0.1793 40 1 4.8581 -4.4811 0.9519 41 1 7.1477 -8.7134 -0.7055 42 1 5.8764 -8.8707 -1.9469 43 1 4.7640 -12.0908 -0.6290 44 1 4.2107 -10.6748 -1.5534 45 1 4.3367 -10.9855 1.4803 46 1 2.8938 -10.7066 0.4695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496918272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:30 Heat of formation + Delta-G solvation = -27.591737 kcal Electronic energy + Delta-G solvation = -29315.146896 eV Core-core repulsion = 25207.496694 eV Total energy + Delta-G solvation = -4107.650202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.36136 -41.38164 -39.93771 -39.30522 -36.48387 -35.38473 -34.74122 -34.17549 -33.63835 -31.68955 -30.67449 -29.12725 -27.64800 -26.47572 -25.53691 -24.91293 -23.91017 -22.42372 -21.52243 -21.38478 -20.79901 -19.72252 -19.16351 -18.95661 -18.19725 -17.34614 -17.04549 -16.75161 -16.57314 -16.32507 -16.05720 -15.90991 -15.81792 -15.53758 -15.12404 -14.82864 -14.68604 -14.60208 -14.50819 -13.83147 -13.79524 -13.62402 -12.96284 -12.86537 -12.81375 -12.70978 -12.36518 -12.11294 -12.06887 -12.04468 -11.89815 -11.79927 -11.68518 -11.59062 -11.55552 -11.46277 -11.00956 -10.94364 -10.32459 -10.28322 -9.36278 -8.06681 -5.41617 -0.13257 0.39668 1.35285 1.39876 1.47213 1.62339 1.82277 1.88223 2.45426 2.57824 2.80868 3.20920 3.26340 3.39288 3.50464 3.56980 3.67991 3.71099 3.91680 3.96434 4.12933 4.21117 4.29703 4.33980 4.37615 4.42353 4.43388 4.46603 4.53977 4.65680 4.69715 4.74388 4.78764 4.88513 4.93150 4.97728 5.02852 5.09622 5.18310 5.24176 5.36961 5.43761 5.69636 5.98688 6.13995 6.16639 6.72230 6.86922 7.03115 7.77018 7.98769 9.14898 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013917 B = 0.002973 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.408818 B = 9416.599228 C =10873.730638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.063 4.063 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.246 1.246 7 C -0.240 4.240 8 H 0.050 0.950 9 N -0.751 5.751 10 C 0.168 3.832 11 C -0.103 4.103 12 H 0.099 0.901 13 C -0.118 4.118 14 C -0.112 4.112 15 C -0.124 4.124 16 C 0.150 3.850 17 H 0.091 0.909 18 N -0.700 5.700 19 C 0.598 3.402 20 O -0.542 6.542 21 C -0.025 4.025 22 N -0.355 5.355 23 O 0.137 5.863 24 C -0.017 4.017 25 C -0.220 4.220 26 C 0.148 3.852 27 O -0.387 6.387 28 C 0.052 3.948 29 C -0.066 4.066 30 H 0.259 0.741 31 H 0.369 0.631 32 H 0.013 0.987 33 H 0.021 0.979 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.409 0.591 41 H 0.111 0.889 42 H 0.081 0.919 43 H 0.147 0.853 44 H 0.066 0.934 45 H 0.125 0.875 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.709 -21.432 1.752 27.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.785 3.215 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.170 1.170 7 C -0.371 4.371 8 H 0.068 0.932 9 N -0.397 5.397 10 C 0.041 3.959 11 C -0.122 4.122 12 H 0.118 0.882 13 C -0.155 4.155 14 C -0.150 4.150 15 C -0.163 4.163 16 C 0.046 3.954 17 H 0.109 0.891 18 N -0.352 5.352 19 C 0.382 3.618 20 O -0.418 6.418 21 C -0.182 4.182 22 N -0.058 5.058 23 O 0.064 5.936 24 C -0.082 4.082 25 C -0.226 4.226 26 C 0.071 3.929 27 O -0.305 6.305 28 C -0.024 4.024 29 C -0.104 4.104 30 H 0.068 0.932 31 H 0.203 0.797 32 H 0.031 0.969 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.247 0.753 41 H 0.129 0.871 42 H 0.099 0.901 43 H 0.165 0.835 44 H 0.084 0.916 45 H 0.143 0.857 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 16.777 -20.710 1.879 26.719 hybrid contribution -0.606 1.171 -0.165 1.329 sum 16.171 -19.539 1.714 25.421 Atomic orbital electron populations 1.69900 1.07289 1.26868 1.59328 1.25568 0.96175 1.01507 1.02202 0.85357 0.78851 0.79063 0.78219 1.20349 1.22150 1.16982 1.18990 0.82767 0.93369 1.41988 0.93217 1.42595 1.02350 1.03919 1.90849 1.20640 0.90421 0.87537 0.97265 1.22457 0.93131 0.96318 1.00311 0.88247 1.22552 0.96610 1.00949 0.95417 1.22329 0.95134 0.95827 1.01678 1.22530 0.96913 0.98189 0.98662 1.21765 0.90545 0.83555 0.99547 0.89112 1.46217 1.35233 1.06092 1.47687 1.16953 0.82575 0.81799 0.80437 1.90743 1.30964 1.84524 1.35600 1.22941 0.98101 0.96122 1.00991 1.74744 1.11075 1.02509 1.17446 1.84642 1.45639 1.11092 1.52221 1.24875 0.92509 0.96550 0.94293 1.21614 1.03206 0.91582 1.06186 1.20857 0.97472 0.79155 0.95445 1.88109 1.28772 1.21231 1.92395 1.23103 0.81854 1.01573 0.95873 1.21399 1.05584 0.80603 1.02825 0.93218 0.79732 0.96946 0.96130 0.92145 0.91289 0.90272 0.89823 0.91803 0.89708 0.75339 0.87116 0.90132 0.83518 0.91577 0.85686 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.96 13.97 21.65 0.30 -63.66 16 2 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 3 Si 0.96 45.39 27.74 68.60 1.90 47.29 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.25 -10.26 6.52 99.48 0.65 -9.61 16 7 C -0.24 -14.05 10.47 84.03 0.88 -13.17 16 8 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 9 N -0.75 -35.36 5.30 -343.45 -1.82 -37.18 16 10 C 0.17 6.49 4.72 86.38 0.41 6.90 16 11 C -0.10 -2.95 2.85 -9.72 -0.03 -2.98 16 12 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 13 C -0.12 -3.02 6.19 31.88 0.20 -2.82 16 14 C -0.11 -2.17 6.83 31.67 0.22 -1.95 16 15 C -0.12 -2.65 6.59 31.32 0.21 -2.44 16 16 C 0.15 3.91 3.10 45.71 0.14 4.06 16 17 H 0.09 2.45 7.61 -2.38 -0.02 2.43 16 18 N -0.70 -20.15 4.37 -441.50 -1.93 -22.08 16 19 C 0.60 18.11 7.84 86.93 0.68 18.80 16 20 O -0.54 -17.57 15.97 -3.69 -0.06 -17.63 16 21 C -0.02 -0.71 7.18 42.46 0.30 -0.40 16 22 N -0.36 -10.41 11.90 -48.98 -0.58 -11.00 16 23 O 0.14 3.32 11.17 81.73 0.91 4.24 16 24 C -0.02 -0.32 7.50 25.09 0.19 -0.14 16 25 C -0.22 -5.16 6.15 -20.07 -0.12 -5.29 16 26 C 0.15 2.95 6.67 71.03 0.47 3.43 16 27 O -0.39 -6.41 10.76 -148.98 -1.60 -8.01 16 28 C 0.05 0.45 6.77 72.20 0.49 0.94 16 29 C -0.07 -0.55 6.56 30.05 0.20 -0.36 16 30 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 31 H 0.37 16.22 5.50 -92.71 -0.51 15.71 16 32 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.02 0.82 6.39 -2.39 -0.02 0.81 16 34 H 0.06 1.67 7.96 -2.39 -0.02 1.65 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.43 7.92 -2.39 -0.02 1.41 16 39 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.41 12.33 6.27 -92.71 -0.58 11.75 16 41 H 0.11 2.37 8.00 -2.39 -0.02 2.35 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.15 0.31 8.14 -2.38 -0.02 0.29 16 44 H 0.07 0.54 8.09 -2.39 -0.02 0.52 16 45 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -76.39 372.34 1.69 -74.70 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: -0.13 Total: 32.07 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 4.70 Total: 1.27 kcal Atomic # 7 Polarization: -129.89 SS G_CDS: -4.03 Total: -133.92 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.75 Total: -21.41 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.29 kcal Total: -76.39 1.69 -74.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496918272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.104 kcal (2) G-P(sol) polarization free energy of solvation -76.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds