Wall clock time and date at job start Tue Mar 31 2020 18:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99845 * 2 1 4 4 H 1.48500 * 109.47242 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47053 * 300.00497 * 3 2 1 6 6 H 1.48510 * 109.46679 * 60.00255 * 3 2 1 7 7 C 1.38807 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00054 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00345 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64487 * 0.02772 * 9 7 2 11 11 C 1.54910 * 104.83209 * 155.84912 * 10 9 7 12 12 C 1.55154 * 101.58031 * 37.01037 * 11 10 9 13 13 O 1.42901 * 110.87391 * 82.93102 * 12 11 10 14 14 C 1.52999 * 110.71880 * 206.13651 * 12 11 10 15 15 N 1.46497 * 109.47282 * 174.97661 * 14 12 11 16 16 C 1.34779 * 120.00072 * 179.97438 * 15 14 12 17 17 O 1.21274 * 120.00112 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99816 * 179.97438 * 16 15 14 19 19 O 1.42901 * 109.47242 * 180.02562 * 18 16 15 20 20 C 1.42899 * 114.00280 * 180.02562 * 19 18 16 21 21 C 1.50692 * 109.47134 * 180.02562 * 20 19 18 22 22 C 1.38667 * 120.42019 * 89.99707 * 21 20 19 23 23 C 1.38637 * 118.42069 * 180.02562 * 22 21 20 24 24 C 1.38221 * 119.16058 * 0.02562 * 23 22 21 25 25 N 1.31853 * 120.76402 * 0.02562 * 24 23 22 26 26 C 1.31882 * 121.72632 * 359.70165 * 25 24 23 27 27 C 1.47019 * 125.65303 * 179.97438 * 9 7 2 28 28 H 0.96993 * 120.00387 * 359.97438 * 1 2 3 29 29 H 1.08998 * 110.36718 * 274.68805 * 10 9 7 30 30 H 1.09005 * 110.36600 * 37.01366 * 10 9 7 31 31 H 1.09002 * 111.00097 * 155.08840 * 11 10 9 32 32 H 1.08999 * 111.00452 * 278.93764 * 11 10 9 33 33 H 0.96694 * 114.00195 * 184.93309 * 13 12 11 34 34 H 1.09000 * 109.46958 * 294.97310 * 14 12 11 35 35 H 1.09000 * 109.47467 * 54.97095 * 14 12 11 36 36 H 0.97006 * 119.99808 * 359.97438 * 15 14 12 37 37 H 1.08998 * 109.47556 * 300.00603 * 18 16 15 38 38 H 1.09002 * 109.46753 * 60.00224 * 18 16 15 39 39 H 1.09007 * 109.46698 * 300.00380 * 20 19 18 40 40 H 1.08993 * 109.47073 * 59.99948 * 20 19 18 41 41 H 1.07998 * 120.79328 * 359.97438 * 22 21 20 42 42 H 1.08004 * 120.41814 * 180.02562 * 23 22 21 43 43 H 1.08004 * 119.61571 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.61781 * 180.31388 * 26 25 24 45 45 H 1.09001 * 109.88389 * 300.50462 * 27 9 7 46 46 H 1.09004 * 109.87600 * 61.51420 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1414 -2.5332 -0.0006 11 6 -0.4014 -3.9320 -0.6132 12 6 0.7786 -4.7524 -0.0286 13 8 0.4766 -5.2093 1.2913 14 6 1.1234 -5.9307 -0.9416 15 7 2.3133 -6.6142 -0.4285 16 6 2.8042 -7.6898 -1.0755 17 8 2.2611 -8.0917 -2.0826 18 6 4.0286 -8.3925 -0.5480 19 8 4.3506 -9.4931 -1.4006 20 6 5.5022 -10.2313 -0.9870 21 6 5.7480 -11.3615 -1.9530 22 6 6.5577 -11.1730 -3.0628 23 6 6.7552 -12.2409 -3.9245 24 6 6.1422 -13.4492 -3.6511 25 7 5.3777 -13.5919 -2.5864 26 6 5.1718 -12.5997 -1.7423 27 6 1.9320 -3.7274 -0.0016 28 1 -0.4850 0.8399 0.0004 29 1 -0.5271 -2.4874 1.0178 30 1 -0.5992 -1.7586 -0.6158 31 1 -1.3588 -4.3326 -0.2800 32 1 -0.3518 -3.8973 -1.7016 33 1 1.2107 -5.6621 1.7283 34 1 0.2862 -6.6283 -0.9664 35 1 1.3209 -5.5643 -1.9490 36 1 2.7479 -6.2925 0.3769 37 1 4.8658 -7.6950 -0.5238 38 1 3.8315 -8.7585 0.4597 39 1 6.3700 -9.5719 -0.9713 40 1 5.3352 -10.6358 0.0112 41 1 7.0228 -10.2168 -3.2518 42 1 7.3800 -12.1300 -4.7985 43 1 6.2907 -14.2859 -4.3177 44 1 4.5432 -12.7558 -0.8782 45 1 2.5582 -3.8502 -0.8853 46 1 2.5309 -3.8639 0.8989 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500756654.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:25 Heat of formation + Delta-G solvation = -86.508080 kcal Electronic energy + Delta-G solvation = -27866.453028 eV Core-core repulsion = 23756.248022 eV Total energy + Delta-G solvation = -4110.205006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.23661 -41.03345 -39.95856 -38.47883 -36.81025 -35.35081 -34.01175 -33.92128 -32.71345 -31.51117 -30.38745 -28.84864 -27.45257 -26.75688 -24.99706 -24.54027 -22.98199 -22.44286 -21.51472 -21.35422 -19.04284 -18.80647 -18.18376 -17.86956 -17.69290 -17.39015 -16.91423 -16.75608 -16.57884 -16.20554 -15.97861 -15.63631 -15.44241 -15.11553 -14.77129 -14.72892 -14.51330 -14.27422 -13.99214 -13.91090 -13.76909 -13.30575 -13.27050 -13.02873 -12.89993 -12.79805 -12.36411 -12.33009 -12.07716 -11.98632 -11.78011 -11.61640 -11.02733 -10.88431 -10.78075 -10.76438 -10.74160 -10.40823 -10.20744 -10.04437 -8.90536 -7.77846 -5.22832 0.04754 0.31498 1.47400 1.48250 1.56073 1.58377 1.78318 2.48651 2.71842 3.15687 3.17739 3.32247 3.43470 3.55264 3.68500 3.74601 3.88075 3.91593 3.92553 3.96161 4.05888 4.07800 4.26245 4.32584 4.44312 4.48741 4.51374 4.60290 4.68069 4.71465 4.80358 4.84478 4.94775 4.98806 5.09186 5.15870 5.28131 5.28485 5.46812 5.61039 5.74204 5.79582 6.01168 6.28991 6.47561 6.81760 6.98590 7.09085 7.18517 7.76490 8.40045 9.24382 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.001836 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.174286 B =15246.528214 C =15951.024973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.070 4.070 3 Si 0.981 3.019 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.237 4.237 8 H 0.085 0.915 9 N -0.623 5.623 10 C 0.159 3.841 11 C -0.122 4.122 12 C 0.127 3.873 13 O -0.553 6.553 14 C 0.121 3.879 15 N -0.712 5.712 16 C 0.510 3.490 17 O -0.576 6.576 18 C 0.047 3.953 19 O -0.394 6.394 20 C 0.105 3.895 21 C -0.154 4.154 22 C -0.064 4.064 23 C -0.175 4.175 24 C 0.088 3.912 25 N -0.520 5.520 26 C 0.102 3.898 27 C 0.113 3.887 28 H 0.247 0.753 29 H -0.014 1.014 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.386 0.614 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.415 0.585 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.153 0.847 42 H 0.164 0.836 43 H 0.178 0.822 44 H 0.165 0.835 45 H 0.037 0.963 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.216 -23.802 -0.873 28.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.366 4.366 8 H 0.103 0.897 9 N -0.349 5.349 10 C 0.034 3.966 11 C -0.161 4.161 12 C 0.086 3.914 13 O -0.361 6.361 14 C -0.004 4.004 15 N -0.367 5.367 16 C 0.297 3.703 17 O -0.455 6.455 18 C -0.032 4.032 19 O -0.313 6.313 20 C 0.028 3.972 21 C -0.156 4.156 22 C -0.090 4.090 23 C -0.195 4.195 24 C -0.068 4.068 25 N -0.229 5.229 26 C -0.054 4.054 27 C -0.013 4.013 28 H 0.056 0.944 29 H 0.004 0.996 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.236 0.764 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.253 0.747 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.171 0.829 42 H 0.181 0.819 43 H 0.195 0.805 44 H 0.182 0.818 45 H 0.055 0.945 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 13.747 -24.487 -1.728 28.135 hybrid contribution 1.155 1.928 0.495 2.301 sum 14.902 -22.559 -1.233 27.065 Atomic orbital electron populations 1.70058 1.06308 1.24977 1.58583 1.25672 0.96633 1.01146 1.02773 0.84966 0.78196 0.79282 0.76600 1.18801 1.21986 1.22124 1.19507 0.91115 0.83579 1.42417 0.89686 1.44708 1.02510 1.00882 1.86838 1.21651 0.84355 0.94112 0.96453 1.22905 0.97463 0.95529 1.00193 1.22168 0.95413 0.90946 0.82922 1.86602 1.42988 1.78323 1.28182 1.21727 0.88056 0.93278 0.97330 1.45687 1.30184 1.30161 1.30686 1.20987 0.85842 0.80066 0.83389 1.90729 1.61764 1.66120 1.26869 1.22358 0.95250 0.90183 0.95369 1.88046 1.47791 1.43536 1.51974 1.21448 0.88501 0.90959 0.96251 1.20811 0.99995 0.96149 0.98643 1.21919 0.94983 1.00102 0.92037 1.22506 1.01772 0.93621 1.01561 1.23310 0.91655 0.98178 0.93673 1.67726 1.16237 1.34029 1.04897 1.22977 0.95855 0.88576 0.98012 1.22144 0.94685 0.85373 0.99071 0.94357 0.99621 0.90810 0.89697 0.89713 0.76413 0.90671 0.91387 0.74727 0.86868 0.86329 0.89653 0.89494 0.82890 0.81852 0.80518 0.81776 0.94483 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.45 10.09 21.65 0.22 -56.23 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 3 Si 0.98 44.93 29.55 68.60 2.03 46.96 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.24 -12.94 10.27 84.03 0.86 -12.08 16 8 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.62 -31.09 3.39 -691.99 -2.35 -33.44 16 10 C 0.16 7.89 5.88 86.86 0.51 8.40 16 11 C -0.12 -4.54 6.26 31.99 0.20 -4.34 16 12 C 0.13 3.96 0.92 -9.61 -0.01 3.95 16 13 O -0.55 -16.11 13.10 -148.98 -1.95 -18.06 16 14 C 0.12 3.20 4.73 86.38 0.41 3.60 16 15 N -0.71 -14.12 5.17 -463.07 -2.40 -16.51 16 16 C 0.51 11.74 7.91 87.66 0.69 12.43 16 17 O -0.58 -19.91 16.50 16.02 0.26 -19.65 16 18 C 0.05 0.64 6.42 71.24 0.46 1.09 16 19 O -0.39 -7.64 9.86 -129.94 -1.28 -8.92 16 20 C 0.10 1.21 6.09 71.23 0.43 1.64 16 21 C -0.15 -2.39 5.53 -19.78 -0.11 -2.50 16 22 C -0.06 -0.88 9.86 22.47 0.22 -0.66 16 23 C -0.18 -2.14 10.11 22.36 0.23 -1.91 16 24 C 0.09 1.32 11.18 84.69 0.95 2.27 16 25 N -0.52 -10.40 10.36 -195.84 -2.03 -12.43 16 26 C 0.10 1.82 10.86 84.67 0.92 2.74 16 27 C 0.11 4.15 6.02 86.73 0.52 4.67 16 28 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 29 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 30 H 0.07 4.17 5.87 -2.38 -0.01 4.15 16 31 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.08 3.00 8.04 -2.39 -0.02 2.98 16 33 H 0.39 7.27 8.12 -74.06 -0.60 6.67 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 36 H 0.42 5.45 7.38 -92.70 -0.68 4.77 16 37 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.12 0.74 8.14 -2.39 -0.02 0.73 16 39 H 0.09 0.59 8.10 -2.38 -0.02 0.57 16 40 H 0.09 0.59 8.09 -2.39 -0.02 0.57 16 41 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 42 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 43 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 44 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 45 H 0.04 1.34 7.82 -2.39 -0.02 1.32 16 46 H 0.04 1.36 8.06 -2.38 -0.02 1.34 16 Total: -1.00 -83.32 385.57 -1.02 -84.34 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -0.28 Total: 18.08 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 6.75 Total: 15.85 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -6.56 Total: -118.61 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -2.97 Total: -46.63 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -83.32 -1.02 -84.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500756654.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.163 kcal (2) G-P(sol) polarization free energy of solvation -83.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds