Wall clock time and date at job start Tue Mar 31 2020 18:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00127 * 2 1 4 4 H 1.48493 * 109.47261 * 239.99981 * 3 2 1 5 5 H 1.48505 * 109.46946 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46945 * 119.99863 * 3 2 1 7 7 C 1.38813 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99828 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00152 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47432 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47241 * 179.97438 * 11 10 9 13 13 C 1.46498 * 120.00372 * 269.99696 * 12 11 10 14 14 C 1.52999 * 109.47448 * 270.00238 * 13 12 11 15 15 O 1.42898 * 109.46829 * 64.99792 * 14 13 12 16 16 C 1.34779 * 120.00045 * 90.00330 * 12 11 10 17 17 O 1.21286 * 119.99742 * 359.97438 * 16 12 11 18 18 C 1.50701 * 120.00372 * 180.02562 * 16 12 11 19 19 C 1.50694 * 109.47119 * 179.97438 * 18 16 12 20 20 C 1.38364 * 119.85421 * 89.99568 * 19 18 16 21 21 C 1.37967 * 120.14264 * 179.97438 * 20 19 18 22 22 C 1.39570 * 119.85310 * 0.02562 * 21 20 19 23 23 C 1.47842 * 120.14248 * 179.97438 * 22 21 20 24 24 N 1.34784 * 120.00082 * 180.02562 * 23 22 21 25 25 O 1.21552 * 120.00146 * 359.97438 * 23 22 21 26 26 C 1.39581 * 119.71335 * 0.25292 * 22 21 20 27 27 C 1.37955 * 119.84955 * 359.46623 * 26 22 21 28 28 H 0.97010 * 120.00112 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00242 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47413 * 59.99702 * 10 9 7 31 31 H 1.09006 * 109.46956 * 299.99915 * 10 9 7 32 32 H 1.09003 * 109.46751 * 59.99611 * 11 10 9 33 33 H 1.08998 * 109.46727 * 300.00122 * 11 10 9 34 34 H 1.09004 * 109.46706 * 30.00293 * 13 12 11 35 35 H 1.09002 * 109.46868 * 149.99887 * 13 12 11 36 36 H 1.08996 * 109.47105 * 184.99943 * 14 13 12 37 37 H 1.09001 * 109.46834 * 304.99767 * 14 13 12 38 38 H 0.96705 * 114.00050 * 179.97438 * 15 14 13 39 39 H 1.08997 * 109.46887 * 59.99410 * 18 16 12 40 40 H 1.09007 * 109.46587 * 299.99483 * 18 16 12 41 41 H 1.07998 * 119.92639 * 0.02562 * 20 19 18 42 42 H 1.07996 * 120.07026 * 180.02562 * 21 20 19 43 43 H 0.97000 * 119.99339 * 359.97438 * 24 23 22 44 44 H 0.96995 * 120.00015 * 179.72522 * 24 23 22 45 45 H 1.07995 * 120.07371 * 179.72649 * 26 22 21 46 46 H 1.08002 * 119.92829 * 180.27238 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 7 1.7962 -6.0884 -0.0018 13 6 2.1625 -6.7222 -1.2708 14 6 1.0408 -7.6641 -1.7130 15 8 -0.1357 -6.9039 -1.9958 16 6 2.1330 -6.6727 1.1651 17 8 1.8301 -6.1478 2.2157 18 6 2.8870 -7.9775 1.1646 19 6 3.1385 -8.4129 2.5852 20 6 2.2143 -9.2123 3.2343 21 6 2.4387 -9.6149 4.5347 22 6 3.6008 -9.2136 5.1955 23 6 3.8474 -9.6408 6.5892 24 7 4.9703 -9.2512 7.2248 25 8 3.0372 -10.3427 7.1622 26 6 4.5262 -8.4024 4.5368 27 6 4.2924 -8.0117 3.2346 28 1 -0.4851 0.8401 -0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 2.6847 -3.7145 0.8894 31 1 2.6846 -3.7145 -0.8906 32 1 0.4374 -4.7617 -0.8914 33 1 0.4367 -4.7621 0.8886 34 1 2.3130 -5.9547 -2.0300 35 1 3.0837 -7.2901 -1.1406 36 1 1.3501 -8.2018 -2.6092 37 1 0.8298 -8.3771 -0.9160 38 1 -0.8893 -7.4375 -2.2830 39 1 3.8395 -7.8464 0.6510 40 1 2.2983 -8.7370 0.6501 41 1 1.3158 -9.5224 2.7217 42 1 1.7168 -10.2392 5.0402 43 1 5.6167 -8.6907 6.7676 44 1 5.1303 -9.5281 8.1405 45 1 5.4251 -8.0848 5.0441 46 1 5.0097 -7.3876 2.7222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501518737.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:19 Heat of formation + Delta-G solvation = -81.825498 kcal Electronic energy + Delta-G solvation = -28207.328706 eV Core-core repulsion = 24097.326752 eV Total energy + Delta-G solvation = -4110.001954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.56844 -39.87772 -38.41861 -37.20489 -35.57544 -34.33868 -34.21787 -32.97754 -31.44228 -31.15769 -29.53187 -28.71572 -26.93986 -24.03621 -23.35703 -22.94577 -22.85043 -21.43747 -20.62929 -19.01874 -18.46623 -17.89549 -17.17092 -17.15327 -16.82019 -16.39043 -15.75556 -15.41884 -15.23885 -15.00541 -14.75449 -14.65430 -14.38487 -13.90796 -13.79543 -13.67220 -13.53009 -13.29086 -13.15021 -12.78353 -12.58247 -12.43136 -12.29263 -11.89757 -11.62150 -11.29011 -11.16513 -10.89094 -10.85668 -10.58095 -10.36392 -10.23609 -10.10812 -10.05254 -9.80048 -9.65548 -9.21527 -8.99179 -8.81707 -8.48619 -6.87418 -5.70845 -2.99796 0.55804 1.15685 2.55387 2.69936 3.07087 3.18995 3.47617 3.51386 3.53016 3.63374 4.02778 4.30295 4.43834 4.50822 4.58460 4.65437 4.69503 4.82245 4.90290 4.97223 5.07367 5.09192 5.18382 5.26209 5.34098 5.52613 5.58529 5.60987 5.74155 5.81435 5.96734 5.99285 6.05899 6.12110 6.26657 6.27459 6.42737 6.59740 6.62529 6.81025 6.98456 6.98789 7.42205 7.56395 7.73606 7.92760 8.28921 8.47752 9.58263 10.15868 10.50937 11.52072 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.002582 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.890455 B =10840.551990 C =12860.463338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.144 3.856 11 C 0.112 3.888 12 N -0.599 5.599 13 C 0.105 3.895 14 C 0.057 3.943 15 O -0.561 6.561 16 C 0.509 3.491 17 O -0.522 6.522 18 C -0.109 4.109 19 C -0.033 4.033 20 C -0.113 4.113 21 C -0.056 4.056 22 C -0.145 4.145 23 C 0.566 3.434 24 N -0.852 5.852 25 O -0.543 6.543 26 C -0.083 4.083 27 C -0.112 4.112 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.020 0.980 31 H 0.015 0.985 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.044 0.956 38 H 0.377 0.623 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.128 0.872 42 H 0.136 0.864 43 H 0.401 0.599 44 H 0.404 0.596 45 H 0.126 0.874 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.799 -25.756 1.348 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.015 3.985 11 C -0.010 4.010 12 N -0.332 5.332 13 C -0.019 4.019 14 C -0.022 4.022 15 O -0.366 6.366 16 C 0.296 3.704 17 O -0.397 6.397 18 C -0.148 4.148 19 C -0.033 4.033 20 C -0.131 4.131 21 C -0.075 4.075 22 C -0.148 4.148 23 C 0.352 3.648 24 N -0.416 5.416 25 O -0.421 6.421 26 C -0.101 4.101 27 C -0.130 4.130 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.224 0.776 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.146 0.854 42 H 0.154 0.846 43 H 0.231 0.769 44 H 0.235 0.765 45 H 0.144 0.856 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.530 -25.284 2.306 27.119 hybrid contribution 0.288 0.704 -0.149 0.775 sum 9.817 -24.580 2.157 26.556 Atomic orbital electron populations 1.69656 1.05093 1.25734 1.57712 1.24747 0.95550 0.97667 1.03076 0.86244 0.78495 0.83508 0.77800 1.21306 1.21656 1.21275 1.19153 0.90921 0.84048 1.42736 0.91337 1.42196 1.05893 0.99768 1.89551 1.20903 0.93962 0.85906 0.97716 1.21708 0.94531 0.81023 1.03710 1.47811 1.57004 1.23474 1.04915 1.21721 0.95787 0.97469 0.86938 1.22700 0.87044 0.93717 0.98714 1.86606 1.22406 1.37539 1.90096 1.20375 0.80133 0.86037 0.83860 1.90782 1.53598 1.64638 1.30666 1.20858 1.02409 0.96452 0.95132 1.19555 0.94032 0.95013 0.94743 1.20977 0.98885 0.98489 0.94755 1.21202 0.95452 0.97012 0.93805 1.19825 0.97791 1.03169 0.94064 1.18328 0.81063 0.79073 0.86297 1.43760 1.23461 1.55909 1.18469 1.90809 1.45485 1.37903 1.67893 1.21192 0.98195 0.96008 0.94732 1.20943 0.97625 0.99679 0.94738 0.93459 0.78226 0.96252 0.96696 0.89497 0.90137 0.88857 0.89039 0.92742 0.93744 0.77595 0.87653 0.87963 0.85402 0.84644 0.76892 0.76493 0.85632 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.13 13.06 55.49 0.72 -28.40 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -19.63 5.60 -59.91 -0.34 -19.96 16 10 C 0.14 3.13 6.58 -4.04 -0.03 3.10 16 11 C 0.11 2.03 5.34 -4.04 -0.02 2.01 16 12 N -0.60 -8.17 2.44 -173.69 -0.42 -8.59 16 13 C 0.10 0.97 5.62 -4.04 -0.02 0.95 16 14 C 0.06 0.43 7.38 37.16 0.27 0.71 16 15 O -0.56 -5.73 12.48 -35.23 -0.44 -6.17 16 16 C 0.51 7.11 7.67 -10.98 -0.08 7.02 16 17 O -0.52 -9.92 15.61 5.55 0.09 -9.83 16 18 C -0.11 -0.95 4.38 -29.04 -0.13 -1.08 16 19 C -0.03 -0.33 4.38 -104.53 -0.46 -0.79 16 20 C -0.11 -1.17 9.68 -39.63 -0.38 -1.55 16 21 C -0.06 -0.62 9.60 -39.18 -0.38 -0.99 16 22 C -0.15 -1.55 5.87 -104.97 -0.62 -2.16 16 23 C 0.57 6.19 8.05 -12.33 -0.10 6.09 16 24 N -0.85 -5.61 8.83 30.53 0.27 -5.34 16 25 O -0.54 -7.98 17.18 5.32 0.09 -7.89 16 26 C -0.08 -0.74 9.54 -39.18 -0.37 -1.11 16 27 C -0.11 -1.08 9.68 -39.64 -0.38 -1.46 16 28 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 29 H 0.38 10.81 7.67 -40.82 -0.31 10.49 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 1.57 7.11 -51.93 -0.37 1.20 16 33 H 0.08 1.64 7.42 -51.93 -0.39 1.26 16 34 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 35 H 0.09 0.53 6.44 -51.93 -0.33 0.20 16 36 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.04 0.30 7.30 -51.93 -0.38 -0.08 16 38 H 0.38 2.19 9.12 45.56 0.42 2.60 16 39 H 0.11 0.65 7.34 -51.93 -0.38 0.27 16 40 H 0.10 0.62 7.20 -51.92 -0.37 0.25 16 41 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.14 1.46 7.65 -52.49 -0.40 1.05 16 43 H 0.40 1.58 6.86 -40.82 -0.28 1.30 16 44 H 0.40 2.11 8.93 -40.82 -0.36 1.74 16 45 H 0.13 0.70 6.41 -52.49 -0.34 0.36 16 46 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 389.54 15.07 5.87 5.87 Total: -1.00 -40.75 389.54 -7.71 -48.45 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -5.58 Total: 10.76 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -2.94 Total: 3.11 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.24 Total: -62.30 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.26 Total: -23.88 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -40.75 -7.71 -48.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501518737.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.372 kcal (2) G-P(sol) polarization free energy of solvation -40.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds