Wall clock time and date at job start Tue Mar 31 2020 18:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00127 * 2 1 4 4 H 1.48493 * 109.47261 * 239.99981 * 3 2 1 5 5 H 1.48505 * 109.46946 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46945 * 119.99863 * 3 2 1 7 7 C 1.38813 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99828 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00152 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47432 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47241 * 179.97438 * 11 10 9 13 13 C 1.46498 * 120.00372 * 269.99696 * 12 11 10 14 14 C 1.52999 * 109.47448 * 270.00238 * 13 12 11 15 15 O 1.42898 * 109.46829 * 64.99792 * 14 13 12 16 16 C 1.34779 * 120.00045 * 90.00330 * 12 11 10 17 17 O 1.21286 * 119.99742 * 359.97438 * 16 12 11 18 18 C 1.50701 * 120.00372 * 180.02562 * 16 12 11 19 19 C 1.50694 * 109.47119 * 179.97438 * 18 16 12 20 20 C 1.38364 * 119.85421 * 89.99568 * 19 18 16 21 21 C 1.37967 * 120.14264 * 179.97438 * 20 19 18 22 22 C 1.39570 * 119.85310 * 0.02562 * 21 20 19 23 23 C 1.47842 * 120.14248 * 179.97438 * 22 21 20 24 24 N 1.34784 * 120.00082 * 180.02562 * 23 22 21 25 25 O 1.21552 * 120.00146 * 359.97438 * 23 22 21 26 26 C 1.39581 * 119.71335 * 0.25292 * 22 21 20 27 27 C 1.37955 * 119.84955 * 359.46623 * 26 22 21 28 28 H 0.97010 * 120.00112 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00242 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47413 * 59.99702 * 10 9 7 31 31 H 1.09006 * 109.46956 * 299.99915 * 10 9 7 32 32 H 1.09003 * 109.46751 * 59.99611 * 11 10 9 33 33 H 1.08998 * 109.46727 * 300.00122 * 11 10 9 34 34 H 1.09004 * 109.46706 * 30.00293 * 13 12 11 35 35 H 1.09002 * 109.46868 * 149.99887 * 13 12 11 36 36 H 1.08996 * 109.47105 * 184.99943 * 14 13 12 37 37 H 1.09001 * 109.46834 * 304.99767 * 14 13 12 38 38 H 0.96705 * 114.00050 * 179.97438 * 15 14 13 39 39 H 1.08997 * 109.46887 * 59.99410 * 18 16 12 40 40 H 1.09007 * 109.46587 * 299.99483 * 18 16 12 41 41 H 1.07998 * 119.92639 * 0.02562 * 20 19 18 42 42 H 1.07996 * 120.07026 * 180.02562 * 21 20 19 43 43 H 0.97000 * 119.99339 * 359.97438 * 24 23 22 44 44 H 0.96995 * 120.00015 * 179.72522 * 24 23 22 45 45 H 1.07995 * 120.07371 * 179.72649 * 26 22 21 46 46 H 1.08002 * 119.92829 * 180.27238 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 7 1.7962 -6.0884 -0.0018 13 6 2.1625 -6.7222 -1.2708 14 6 1.0408 -7.6641 -1.7130 15 8 -0.1357 -6.9039 -1.9958 16 6 2.1330 -6.6727 1.1651 17 8 1.8301 -6.1478 2.2157 18 6 2.8870 -7.9775 1.1646 19 6 3.1385 -8.4129 2.5852 20 6 2.2143 -9.2123 3.2343 21 6 2.4387 -9.6149 4.5347 22 6 3.6008 -9.2136 5.1955 23 6 3.8474 -9.6408 6.5892 24 7 4.9703 -9.2512 7.2248 25 8 3.0372 -10.3427 7.1622 26 6 4.5262 -8.4024 4.5368 27 6 4.2924 -8.0117 3.2346 28 1 -0.4851 0.8401 -0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 2.6847 -3.7145 0.8894 31 1 2.6846 -3.7145 -0.8906 32 1 0.4374 -4.7617 -0.8914 33 1 0.4367 -4.7621 0.8886 34 1 2.3130 -5.9547 -2.0300 35 1 3.0837 -7.2901 -1.1406 36 1 1.3501 -8.2018 -2.6092 37 1 0.8298 -8.3771 -0.9160 38 1 -0.8893 -7.4375 -2.2830 39 1 3.8395 -7.8464 0.6510 40 1 2.2983 -8.7370 0.6501 41 1 1.3158 -9.5224 2.7217 42 1 1.7168 -10.2392 5.0402 43 1 5.6167 -8.6907 6.7676 44 1 5.1303 -9.5281 8.1405 45 1 5.4251 -8.0848 5.0441 46 1 5.0097 -7.3876 2.7222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501518737.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:18 Heat of formation + Delta-G solvation = -116.134026 kcal Electronic energy + Delta-G solvation = -28208.816435 eV Core-core repulsion = 24097.326752 eV Total energy + Delta-G solvation = -4111.489683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44579 -40.83871 -39.24692 -38.03276 -37.05732 -35.84596 -35.02713 -33.94033 -33.22377 -31.88043 -30.80686 -29.60927 -28.30466 -25.70403 -24.37244 -23.82517 -23.64748 -23.03392 -21.44364 -20.10134 -19.20811 -19.15535 -18.61920 -17.91736 -17.71284 -17.52162 -16.79665 -16.49382 -16.12886 -16.03815 -15.86386 -15.70201 -15.40285 -15.30813 -15.08387 -15.02548 -14.62352 -14.52008 -14.25440 -13.95681 -13.37532 -13.32610 -13.16205 -13.00788 -12.87067 -12.68530 -12.60054 -12.44153 -12.16781 -12.10605 -11.97391 -11.87556 -11.24579 -10.97296 -10.96804 -10.78687 -10.75856 -9.94684 -9.77300 -9.65463 -9.06955 -7.97387 -5.28675 -0.21771 0.42345 1.45238 1.50104 1.56134 1.66501 1.71521 2.06036 2.51137 2.55984 2.85644 3.35353 3.48823 3.57026 3.70217 3.78687 3.91295 4.01313 4.09482 4.17477 4.23618 4.26910 4.33013 4.38339 4.44817 4.53368 4.59441 4.63554 4.65979 4.73361 4.83348 4.98058 5.03538 5.08939 5.11544 5.25708 5.33818 5.42155 5.53286 5.57739 5.81348 5.90803 6.23441 6.36218 6.48400 7.01635 7.23194 7.23326 7.29029 8.01701 8.26688 9.26066 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.002582 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.890455 B =10840.551990 C =12860.463338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.980 3.020 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.075 0.925 9 N -0.744 5.744 10 C 0.151 3.849 11 C 0.133 3.867 12 N -0.597 5.597 13 C 0.094 3.906 14 C 0.055 3.945 15 O -0.597 6.597 16 C 0.504 3.496 17 O -0.583 6.583 18 C -0.096 4.096 19 C -0.045 4.045 20 C -0.122 4.122 21 C -0.077 4.077 22 C -0.161 4.161 23 C 0.561 3.439 24 N -0.829 5.829 25 O -0.591 6.591 26 C -0.079 4.079 27 C -0.122 4.122 28 H 0.253 0.747 29 H 0.373 0.627 30 H 0.002 0.998 31 H 0.029 0.971 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.393 0.607 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.126 0.874 43 H 0.417 0.583 44 H 0.413 0.587 45 H 0.159 0.841 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.471 -26.672 -0.092 29.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.808 3.192 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.093 0.907 9 N -0.387 5.387 10 C 0.023 3.977 11 C 0.009 3.991 12 N -0.329 5.329 13 C -0.028 4.028 14 C -0.023 4.023 15 O -0.405 6.405 16 C 0.294 3.706 17 O -0.462 6.462 18 C -0.135 4.135 19 C -0.046 4.046 20 C -0.139 4.139 21 C -0.096 4.096 22 C -0.164 4.164 23 C 0.348 3.652 24 N -0.393 5.393 25 O -0.473 6.473 26 C -0.098 4.098 27 C -0.140 4.140 28 H 0.062 0.938 29 H 0.205 0.795 30 H 0.020 0.980 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.154 0.846 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.243 0.757 39 H 0.160 0.840 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.144 0.856 43 H 0.249 0.751 44 H 0.245 0.755 45 H 0.176 0.824 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.283 -26.246 0.825 28.990 hybrid contribution -0.503 0.943 0.293 1.108 sum 11.780 -25.304 1.118 27.934 Atomic orbital electron populations 1.69830 1.06761 1.26389 1.59025 1.25678 0.96515 1.01403 1.03224 0.85121 0.77188 0.78558 0.78331 1.19791 1.21854 1.20479 1.19575 0.91445 0.85177 1.42062 0.90708 1.42421 1.05630 1.01137 1.89548 1.20953 0.94314 0.85337 0.97049 1.21159 0.93570 0.82386 1.02016 1.47876 1.56187 1.21826 1.06996 1.22174 0.98482 0.97784 0.84314 1.22834 0.85664 0.93175 1.00613 1.86554 1.23996 1.39556 1.90433 1.21334 0.79308 0.87221 0.82721 1.90761 1.56031 1.66596 1.32825 1.20920 1.03770 0.93750 0.95046 1.19817 0.94169 0.94871 0.95694 1.21177 0.99527 0.98686 0.94557 1.21308 0.95956 0.97740 0.94551 1.19958 0.98319 1.03994 0.94122 1.18502 0.81488 0.78667 0.86538 1.43580 1.22249 1.54781 1.18737 1.90781 1.47331 1.40302 1.68895 1.21537 0.98739 0.94784 0.94695 1.21307 0.97972 0.99595 0.95114 0.93806 0.79501 0.98045 0.95356 0.89574 0.93329 0.90098 0.84597 0.89396 0.92459 0.75735 0.84020 0.84541 0.84195 0.85581 0.75076 0.75483 0.82365 0.83425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.62 13.06 21.65 0.28 -61.34 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 3 Si 0.98 47.33 29.55 68.60 2.03 49.36 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 7 C -0.25 -14.80 9.99 84.03 0.84 -13.96 16 8 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.74 -40.99 5.60 -343.45 -1.92 -42.91 16 10 C 0.15 6.66 6.58 86.38 0.57 7.23 16 11 C 0.13 4.89 5.34 86.38 0.46 5.35 16 12 N -0.60 -15.45 2.44 -821.81 -2.00 -17.45 16 13 C 0.09 1.44 5.62 86.38 0.49 1.92 16 14 C 0.06 0.65 7.38 71.98 0.53 1.18 16 15 O -0.60 -11.26 12.48 -148.98 -1.86 -13.11 16 16 C 0.50 13.34 7.67 87.66 0.67 14.02 16 17 O -0.58 -22.45 15.61 -3.05 -0.05 -22.49 16 18 C -0.10 -1.33 4.38 29.10 0.13 -1.20 16 19 C -0.04 -0.82 4.38 -19.81 -0.09 -0.91 16 20 C -0.12 -2.42 9.68 22.24 0.22 -2.20 16 21 C -0.08 -1.73 9.60 22.53 0.22 -1.51 16 22 C -0.16 -3.37 5.87 -20.09 -0.12 -3.49 16 23 C 0.56 12.25 8.05 86.78 0.70 12.95 16 24 N -0.83 -9.81 8.83 -175.60 -1.55 -11.36 16 25 O -0.59 -18.03 17.18 -3.88 -0.07 -18.10 16 26 C -0.08 -1.26 9.54 22.53 0.21 -1.05 16 27 C -0.12 -2.07 9.68 22.23 0.22 -1.85 16 28 H 0.25 15.48 8.31 -92.70 -0.77 14.71 16 29 H 0.37 21.81 7.67 -92.71 -0.71 21.10 16 30 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.03 1.18 8.14 -2.38 -0.02 1.17 16 32 H 0.09 3.17 7.11 -2.39 -0.02 3.15 16 33 H 0.05 2.09 7.42 -2.39 -0.02 2.07 16 34 H 0.08 1.48 8.07 -2.39 -0.02 1.46 16 35 H 0.14 0.84 6.44 -2.39 -0.02 0.83 16 36 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.06 0.54 7.30 -2.39 -0.02 0.52 16 38 H 0.39 4.00 9.12 -74.05 -0.68 3.33 16 39 H 0.14 0.97 7.34 -2.39 -0.02 0.96 16 40 H 0.14 0.99 7.20 -2.38 -0.02 0.98 16 41 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.13 2.95 7.65 -2.91 -0.02 2.92 16 43 H 0.42 2.29 6.86 -92.71 -0.64 1.66 16 44 H 0.41 3.79 8.93 -92.71 -0.83 2.96 16 45 H 0.16 1.28 6.41 -2.91 -0.02 1.26 16 46 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -93.14 389.54 -1.42 -94.57 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -1.79 Total: 30.46 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 5.51 Total: 12.39 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -5.19 Total: -133.06 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -1.97 Total: -53.71 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -93.14 -1.42 -94.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501518737.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.569 kcal (2) G-P(sol) polarization free energy of solvation -93.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds