Wall clock time and date at job start Tue Mar 31 2020 18:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99968 * 2 1 4 4 H 1.48507 * 109.47097 * 240.00141 * 3 2 1 5 5 H 1.48502 * 109.46998 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47434 * 119.99866 * 3 2 1 7 7 C 1.38813 * 120.00566 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00547 * 190.76938 * 7 2 1 9 9 N 1.36943 * 119.99746 * 10.76760 * 7 2 1 10 10 C 1.47148 * 120.97945 * 31.16163 * 9 7 2 11 11 C 1.53301 * 108.38540 * 129.48925 * 10 9 7 12 12 O 1.42962 * 109.21754 * 52.30064 * 11 10 9 13 13 C 1.42963 * 114.16625 * 297.41589 * 12 11 10 14 14 C 1.47144 * 120.98337 * 211.18581 * 9 7 2 15 15 H 1.09007 * 109.68218 * 110.74955 * 14 9 7 16 16 C 1.53000 * 109.68124 * 350.23514 * 14 9 7 17 17 N 1.46500 * 109.47302 * 60.59646 * 16 14 9 18 18 C 1.34770 * 120.00427 * 179.97438 * 17 16 14 19 19 O 1.21280 * 120.00026 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00399 * 179.97438 * 18 17 16 21 21 O 1.42895 * 109.47481 * 180.02562 * 20 18 17 22 22 C 1.42906 * 114.00443 * 180.02562 * 21 20 18 23 23 C 1.50696 * 109.47486 * 180.02562 * 22 21 20 24 24 C 1.38679 * 120.41753 * 269.72510 * 23 22 21 25 25 C 1.38624 * 118.42061 * 179.78068 * 24 23 22 26 26 C 1.38230 * 119.16020 * 0.51047 * 25 24 23 27 27 N 1.31855 * 120.76496 * 359.72619 * 26 25 24 28 28 C 1.31888 * 121.72173 * 359.97438 * 27 26 25 29 29 H 0.96999 * 120.00283 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.68229 * 249.21260 * 10 9 7 31 31 H 1.09006 * 109.68522 * 9.76259 * 10 9 7 32 32 H 1.09002 * 109.50915 * 172.22367 * 11 10 9 33 33 H 1.08994 * 109.50582 * 292.32783 * 11 10 9 34 34 H 1.08996 * 109.51350 * 302.66271 * 13 12 11 35 35 H 1.09002 * 109.50667 * 182.50832 * 13 12 11 36 36 H 1.08993 * 109.47453 * 300.59554 * 16 14 9 37 37 H 1.09002 * 109.47171 * 180.59232 * 16 14 9 38 38 H 0.97003 * 119.99825 * 359.97438 * 17 16 14 39 39 H 1.09001 * 109.47253 * 60.00114 * 20 18 17 40 40 H 1.09000 * 109.47292 * 300.00645 * 20 18 17 41 41 H 1.09000 * 109.46786 * 300.00200 * 22 21 20 42 42 H 1.08996 * 109.46835 * 59.99825 * 22 21 20 43 43 H 1.07999 * 120.78621 * 0.02562 * 24 23 22 44 44 H 1.07995 * 120.42172 * 180.25592 * 25 24 23 45 45 H 1.08000 * 119.61726 * 179.74335 * 26 25 24 46 46 H 1.08010 * 119.61054 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0761 -1.2102 0.1753 9 7 1.3438 -2.3777 -0.2205 10 6 0.1540 -2.4228 -1.0852 11 6 0.3411 -3.5507 -2.1066 12 8 0.6717 -4.7591 -1.4179 13 6 1.9030 -4.7018 -0.6936 14 6 1.7958 -3.6330 0.4000 15 1 1.0756 -3.9498 1.1544 16 6 3.1645 -3.4226 1.0506 17 7 3.0594 -2.3925 2.0870 18 6 4.1479 -2.0388 2.7986 19 8 5.2147 -2.5731 2.5807 20 6 4.0399 -0.9788 3.8643 21 8 5.3182 -0.7823 4.4720 22 6 5.3259 0.2077 5.5025 23 6 6.7166 0.3318 6.0696 24 6 7.1073 -0.4478 7.1479 25 6 8.3976 -0.3033 7.6334 26 6 9.2425 0.6144 7.0377 27 7 8.8352 1.3427 6.0168 28 6 7.6169 1.2275 5.5251 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7319 -2.6181 -0.4808 31 1 0.0418 -1.4714 -1.6053 32 1 -0.5835 -3.6918 -2.6663 33 1 1.1464 -3.2899 -2.7932 34 1 2.7145 -4.4458 -1.3747 35 1 2.1020 -5.6714 -0.2370 36 1 3.8816 -3.1046 0.2938 37 1 3.5008 -4.3570 1.5000 38 1 2.2063 -1.9649 2.2611 39 1 3.3224 -1.2961 4.6210 40 1 3.7043 -0.0444 3.4146 41 1 5.0163 1.1668 5.0872 42 1 4.6355 -0.0856 6.2933 43 1 6.4237 -1.1538 7.5961 44 1 8.7372 -0.8971 8.4691 45 1 10.2480 0.7360 7.4127 46 1 7.3192 1.8410 4.6875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501841939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:39 Heat of formation + Delta-G solvation = -54.112554 kcal Electronic energy + Delta-G solvation = -28913.653746 eV Core-core repulsion = 24804.853515 eV Total energy + Delta-G solvation = -4108.800230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.38108 -39.43580 -38.45481 -37.38510 -35.31708 -33.60764 -33.11806 -31.97528 -31.65017 -30.52526 -28.44036 -27.21110 -26.27592 -24.77701 -23.77903 -23.49987 -22.20402 -21.75467 -20.05319 -19.65704 -17.48928 -17.18584 -16.83631 -16.81050 -16.32504 -16.02964 -15.67523 -15.51534 -15.34314 -14.75451 -14.63280 -14.29148 -14.03889 -13.92829 -13.77775 -13.72247 -13.29351 -13.24933 -12.93114 -12.72326 -12.34501 -12.15932 -11.76627 -11.61346 -11.48845 -11.09766 -10.92577 -10.80201 -10.46056 -10.32348 -10.10036 -10.06078 -9.81905 -9.70933 -9.61122 -9.44460 -9.25660 -8.99610 -8.73165 -8.32685 -6.78910 -5.96786 -3.46897 0.81703 1.06302 3.05710 3.14602 3.21859 3.30587 3.33782 3.66250 4.14194 4.27569 4.34545 4.50035 4.55158 4.68498 4.74423 4.81827 5.05637 5.10546 5.12481 5.20241 5.27338 5.29064 5.41597 5.45976 5.55582 5.56101 5.69201 5.81994 5.86346 5.98238 6.03229 6.05309 6.12595 6.19602 6.29426 6.45982 6.48464 6.71212 6.94267 7.02850 7.07903 7.44266 7.64093 7.75291 7.83069 8.14351 8.23416 8.76777 8.99553 9.59867 10.19330 11.09463 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.002737 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.350490 B =10226.404277 C =11467.144968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.009 3.991 3 Si 0.898 3.102 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.074 0.926 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.042 0.958 16 C 0.138 3.862 17 N -0.693 5.693 18 C 0.510 3.490 19 O -0.543 6.543 20 C 0.043 3.957 21 O -0.357 6.357 22 C 0.103 3.897 23 C -0.137 4.137 24 C -0.054 4.054 25 C -0.177 4.177 26 C 0.100 3.900 27 N -0.488 5.488 28 C 0.122 3.878 29 H 0.256 0.744 30 H 0.029 0.971 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.416 0.584 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.156 0.844 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.972 -1.329 11.812 13.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.727 3.273 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.091 0.909 9 N -0.317 5.317 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.060 0.940 16 C 0.014 3.986 17 N -0.347 5.347 18 C 0.295 3.705 19 O -0.421 6.421 20 C -0.037 4.037 21 O -0.275 6.275 22 C 0.026 3.974 23 C -0.139 4.139 24 C -0.080 4.080 25 C -0.197 4.197 26 C -0.057 4.057 27 N -0.196 5.196 28 C -0.035 4.035 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.253 0.747 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.173 0.827 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 8.235 -1.211 11.220 13.970 hybrid contribution -0.757 0.967 0.472 1.315 sum 7.478 -0.244 11.692 13.881 Atomic orbital electron populations 1.69967 1.05170 1.25837 1.53348 1.25150 0.95297 0.98186 1.00390 0.86462 0.78881 0.83438 0.78517 1.20845 1.21491 1.20791 1.19216 0.91348 0.83320 1.44746 0.90893 1.44083 1.32012 1.02928 1.52683 1.21421 0.88862 0.96821 0.91054 1.23352 0.99162 0.86543 0.95279 1.87803 1.40284 1.36127 1.66885 1.22865 0.86706 0.98694 0.94061 1.21434 0.93653 0.89320 0.93784 0.94049 1.21157 0.97581 0.89927 0.89910 1.45880 1.12239 1.40580 1.35970 1.20006 0.84524 0.83424 0.82578 1.90675 1.27996 1.55002 1.68437 1.22261 0.86462 0.99329 0.95634 1.88067 1.29261 1.58427 1.51768 1.21258 0.92832 0.92745 0.90600 1.20607 0.97143 0.98775 0.97363 1.21541 0.96087 0.95956 0.94380 1.22143 0.94755 1.00642 1.02174 1.22829 0.99765 0.91479 0.91622 1.67749 1.16568 1.24125 1.11154 1.22756 0.88204 0.95365 0.97180 0.93343 0.95240 0.88965 0.90231 0.94102 0.93462 0.89876 0.91445 0.92246 0.74654 0.90435 0.89783 0.91699 0.91960 0.84634 0.84622 0.82721 0.82532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.39 11.14 55.49 0.62 -22.77 16 2 C 0.01 0.23 5.06 -17.43 -0.09 0.15 16 3 Si 0.90 20.04 29.57 -169.99 -5.03 15.01 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.26 -6.14 7.06 -15.06 -0.11 -6.24 16 8 H 0.07 1.78 5.81 -52.49 -0.30 1.48 16 9 N -0.59 -13.18 3.03 -164.30 -0.50 -13.68 16 10 C 0.14 3.18 5.38 -3.53 -0.02 3.16 16 11 C 0.03 0.65 6.99 37.31 0.26 0.91 16 12 O -0.39 -7.49 10.74 -35.23 -0.38 -7.87 16 13 C 0.06 0.97 6.29 37.31 0.23 1.20 16 14 C 0.13 2.37 3.21 -67.43 -0.22 2.15 16 15 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 16 C 0.14 2.50 4.45 -4.04 -0.02 2.48 16 17 N -0.69 -12.54 3.77 -60.30 -0.23 -12.77 16 18 C 0.51 9.43 7.91 -10.99 -0.09 9.34 16 19 O -0.54 -11.99 16.50 -14.35 -0.24 -12.23 16 20 C 0.04 0.64 6.42 36.00 0.23 0.87 16 21 O -0.36 -5.57 9.86 -55.14 -0.54 -6.12 16 22 C 0.10 1.17 6.09 36.00 0.22 1.39 16 23 C -0.14 -1.59 5.53 -104.48 -0.58 -2.17 16 24 C -0.05 -0.54 9.86 -39.28 -0.39 -0.92 16 25 C -0.18 -1.57 10.11 -39.44 -0.40 -1.97 16 26 C 0.10 1.00 11.18 -17.54 -0.20 0.80 16 27 N -0.49 -6.13 10.36 -13.25 -0.14 -6.27 16 28 C 0.12 1.49 10.86 -17.55 -0.19 1.30 16 29 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 2.25 6.33 -51.93 -0.33 1.92 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.34 7.57 -51.93 -0.39 0.95 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.42 7.65 7.31 -40.82 -0.30 7.35 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 42 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 43 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.16 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -31.40 379.68 -8.84 -40.24 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.80 Total: 8.28 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: -1.34 Total: 12.44 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.24 Total: -55.48 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -1.16 Total: -26.21 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.40 -8.84 -40.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501841939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.872 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds