Wall clock time and date at job start Tue Mar 31 2020 18:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99968 * 2 1 4 4 H 1.48507 * 109.47097 * 240.00141 * 3 2 1 5 5 H 1.48502 * 109.46998 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47434 * 119.99866 * 3 2 1 7 7 C 1.38813 * 120.00566 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00547 * 190.76938 * 7 2 1 9 9 N 1.36943 * 119.99746 * 10.76760 * 7 2 1 10 10 C 1.47148 * 120.97945 * 31.16163 * 9 7 2 11 11 C 1.53301 * 108.38540 * 129.48925 * 10 9 7 12 12 O 1.42962 * 109.21754 * 52.30064 * 11 10 9 13 13 C 1.42963 * 114.16625 * 297.41589 * 12 11 10 14 14 C 1.47144 * 120.98337 * 211.18581 * 9 7 2 15 15 H 1.09007 * 109.68218 * 110.74955 * 14 9 7 16 16 C 1.53000 * 109.68124 * 350.23514 * 14 9 7 17 17 N 1.46500 * 109.47302 * 60.59646 * 16 14 9 18 18 C 1.34770 * 120.00427 * 179.97438 * 17 16 14 19 19 O 1.21280 * 120.00026 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00399 * 179.97438 * 18 17 16 21 21 O 1.42895 * 109.47481 * 180.02562 * 20 18 17 22 22 C 1.42906 * 114.00443 * 180.02562 * 21 20 18 23 23 C 1.50696 * 109.47486 * 180.02562 * 22 21 20 24 24 C 1.38679 * 120.41753 * 269.72510 * 23 22 21 25 25 C 1.38624 * 118.42061 * 179.78068 * 24 23 22 26 26 C 1.38230 * 119.16020 * 0.51047 * 25 24 23 27 27 N 1.31855 * 120.76496 * 359.72619 * 26 25 24 28 28 C 1.31888 * 121.72173 * 359.97438 * 27 26 25 29 29 H 0.96999 * 120.00283 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.68229 * 249.21260 * 10 9 7 31 31 H 1.09006 * 109.68522 * 9.76259 * 10 9 7 32 32 H 1.09002 * 109.50915 * 172.22367 * 11 10 9 33 33 H 1.08994 * 109.50582 * 292.32783 * 11 10 9 34 34 H 1.08996 * 109.51350 * 302.66271 * 13 12 11 35 35 H 1.09002 * 109.50667 * 182.50832 * 13 12 11 36 36 H 1.08993 * 109.47453 * 300.59554 * 16 14 9 37 37 H 1.09002 * 109.47171 * 180.59232 * 16 14 9 38 38 H 0.97003 * 119.99825 * 359.97438 * 17 16 14 39 39 H 1.09001 * 109.47253 * 60.00114 * 20 18 17 40 40 H 1.09000 * 109.47292 * 300.00645 * 20 18 17 41 41 H 1.09000 * 109.46786 * 300.00200 * 22 21 20 42 42 H 1.08996 * 109.46835 * 59.99825 * 22 21 20 43 43 H 1.07999 * 120.78621 * 0.02562 * 24 23 22 44 44 H 1.07995 * 120.42172 * 180.25592 * 25 24 23 45 45 H 1.08000 * 119.61726 * 179.74335 * 26 25 24 46 46 H 1.08010 * 119.61054 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0761 -1.2102 0.1753 9 7 1.3438 -2.3777 -0.2205 10 6 0.1540 -2.4228 -1.0852 11 6 0.3411 -3.5507 -2.1066 12 8 0.6717 -4.7591 -1.4179 13 6 1.9030 -4.7018 -0.6936 14 6 1.7958 -3.6330 0.4000 15 1 1.0756 -3.9498 1.1544 16 6 3.1645 -3.4226 1.0506 17 7 3.0594 -2.3925 2.0870 18 6 4.1479 -2.0388 2.7986 19 8 5.2147 -2.5731 2.5807 20 6 4.0399 -0.9788 3.8643 21 8 5.3182 -0.7823 4.4720 22 6 5.3259 0.2077 5.5025 23 6 6.7166 0.3318 6.0696 24 6 7.1073 -0.4478 7.1479 25 6 8.3976 -0.3033 7.6334 26 6 9.2425 0.6144 7.0377 27 7 8.8352 1.3427 6.0168 28 6 7.6169 1.2275 5.5251 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7319 -2.6181 -0.4808 31 1 0.0418 -1.4714 -1.6053 32 1 -0.5835 -3.6918 -2.6663 33 1 1.1464 -3.2899 -2.7932 34 1 2.7145 -4.4458 -1.3747 35 1 2.1020 -5.6714 -0.2370 36 1 3.8816 -3.1046 0.2938 37 1 3.5008 -4.3570 1.5000 38 1 2.2063 -1.9649 2.2611 39 1 3.3224 -1.2961 4.6210 40 1 3.7043 -0.0444 3.4146 41 1 5.0163 1.1668 5.0872 42 1 4.6355 -0.0856 6.2933 43 1 6.4237 -1.1538 7.5961 44 1 8.7372 -0.8971 8.4691 45 1 10.2480 0.7360 7.4127 46 1 7.3192 1.8410 4.6875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501841939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:38 Heat of formation + Delta-G solvation = -74.958448 kcal Electronic energy + Delta-G solvation = -28914.557692 eV Core-core repulsion = 24804.853515 eV Total energy + Delta-G solvation = -4109.704176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.20008 -40.86756 -39.94034 -38.53887 -36.90355 -35.28768 -33.97106 -33.32582 -32.72122 -32.18300 -29.67589 -28.88068 -27.30032 -26.14121 -25.21715 -24.55925 -23.32984 -23.00427 -21.54062 -21.25706 -18.89407 -18.24682 -17.90310 -17.83500 -17.68643 -17.49287 -17.06861 -16.74753 -16.38453 -16.24037 -16.05555 -15.93024 -15.40849 -15.15402 -15.06450 -14.76917 -14.73491 -14.41081 -14.15616 -13.99532 -13.63782 -13.31821 -13.14620 -13.04043 -12.79864 -12.71536 -12.50414 -12.35175 -12.14373 -11.99577 -11.84540 -11.30428 -10.96887 -10.83112 -10.81147 -10.59823 -10.55081 -10.43222 -10.06794 -9.87577 -8.60986 -7.85787 -5.37204 0.02673 0.29479 1.41692 1.49267 1.52566 1.65484 1.95717 2.45707 2.74301 3.03124 3.18643 3.30341 3.45056 3.52995 3.77701 3.83955 3.92040 4.03458 4.04539 4.05653 4.18657 4.24021 4.28031 4.35321 4.40923 4.47087 4.48239 4.60874 4.64783 4.66879 4.68627 4.75922 4.80993 5.01282 5.12391 5.13611 5.26662 5.31469 5.54296 5.64306 5.70070 5.72308 5.98543 6.30331 6.38392 6.68934 6.96169 7.11739 7.31802 7.77501 8.34028 9.18272 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.002737 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.350490 B =10226.404277 C =11467.144968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.028 4.028 3 Si 0.942 3.058 4 H -0.293 1.293 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.245 4.245 8 H 0.068 0.932 9 N -0.605 5.605 10 C 0.149 3.851 11 C 0.045 3.955 12 O -0.397 6.397 13 C 0.056 3.944 14 C 0.127 3.873 15 H 0.042 0.958 16 C 0.144 3.856 17 N -0.691 5.691 18 C 0.506 3.494 19 O -0.584 6.584 20 C 0.048 3.952 21 O -0.386 6.386 22 C 0.100 3.900 23 C -0.153 4.153 24 C -0.061 4.061 25 C -0.171 4.171 26 C 0.089 3.911 27 N -0.518 5.518 28 C 0.099 3.901 29 H 0.251 0.749 30 H 0.009 0.991 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.118 0.882 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.415 0.585 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.157 0.843 44 H 0.170 0.830 45 H 0.182 0.818 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.468 -2.438 13.344 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.225 4.225 3 Si 0.771 3.229 4 H -0.220 1.220 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.375 4.375 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.024 3.976 11 C -0.032 4.032 12 O -0.316 6.316 13 C -0.022 4.022 14 C 0.021 3.979 15 H 0.059 0.941 16 C 0.019 3.981 17 N -0.344 5.344 18 C 0.293 3.707 19 O -0.465 6.465 20 C -0.031 4.031 21 O -0.306 6.306 22 C 0.024 3.976 23 C -0.155 4.155 24 C -0.087 4.087 25 C -0.190 4.190 26 C -0.067 4.067 27 N -0.227 5.227 28 C -0.057 4.057 29 H 0.060 0.940 30 H 0.027 0.973 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.136 0.864 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.252 0.748 39 H 0.131 0.869 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.175 0.825 44 H 0.188 0.812 45 H 0.199 0.801 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.727 -2.330 12.761 15.635 hybrid contribution -0.845 1.256 0.038 1.514 sum 7.883 -1.075 12.800 15.071 Atomic orbital electron populations 1.70083 1.06109 1.25758 1.55085 1.25584 0.95700 1.00153 1.01099 0.85752 0.77796 0.80969 0.78356 1.22003 1.22051 1.19454 1.19248 0.91073 0.84039 1.43152 0.91463 1.44277 1.31824 1.03692 1.53311 1.21244 0.88207 0.96875 0.91322 1.23221 1.00446 0.85346 0.94230 1.87807 1.41050 1.35758 1.66971 1.22997 0.86068 0.99754 0.93395 1.21547 0.93776 0.88282 0.94298 0.94088 1.21101 0.96497 0.90828 0.89636 1.45893 1.12216 1.40462 1.35781 1.20660 0.83656 0.83567 0.82844 1.90649 1.29348 1.56681 1.69788 1.22240 0.87215 0.98083 0.95540 1.88022 1.29705 1.59792 1.53061 1.21469 0.93474 0.92292 0.90395 1.20736 0.97266 0.99287 0.98209 1.21910 0.97068 0.95822 0.93889 1.22530 0.94017 0.99998 1.02439 1.23386 1.01208 0.91189 0.90953 1.67729 1.16881 1.25513 1.12549 1.22865 0.88739 0.96320 0.97819 0.93986 0.97308 0.91626 0.87799 0.94008 0.93455 0.86415 0.93422 0.90183 0.74762 0.86899 0.89413 0.90936 0.89288 0.82541 0.81231 0.80079 0.82722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.73 11.14 21.65 0.24 -48.49 16 2 C -0.03 -1.41 5.06 84.86 0.43 -0.98 16 3 Si 0.94 41.28 29.57 68.60 2.03 43.31 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 6 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.25 -11.70 7.06 84.03 0.59 -11.11 16 8 H 0.07 3.29 5.81 -2.91 -0.02 3.27 16 9 N -0.61 -26.79 3.03 -673.72 -2.04 -28.83 16 10 C 0.15 6.60 5.38 86.36 0.46 7.07 16 11 C 0.05 1.65 6.99 72.08 0.50 2.15 16 12 O -0.40 -14.29 10.74 -148.98 -1.60 -15.89 16 13 C 0.06 1.82 6.29 72.08 0.45 2.27 16 14 C 0.13 4.65 3.21 44.97 0.14 4.79 16 15 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 16 C 0.14 5.04 4.45 86.38 0.38 5.42 16 17 N -0.69 -24.42 3.77 -463.08 -1.75 -26.17 16 18 C 0.51 18.31 7.91 87.66 0.69 19.00 16 19 O -0.58 -25.67 16.50 16.01 0.26 -25.41 16 20 C 0.05 1.36 6.42 71.24 0.46 1.82 16 21 O -0.39 -11.64 9.86 -129.94 -1.28 -12.92 16 22 C 0.10 2.13 6.09 71.23 0.43 2.56 16 23 C -0.15 -3.41 5.53 -19.78 -0.11 -3.52 16 24 C -0.06 -1.10 9.86 22.47 0.22 -0.88 16 25 C -0.17 -2.60 10.11 22.36 0.23 -2.38 16 26 C 0.09 1.64 11.18 84.69 0.95 2.59 16 27 N -0.52 -12.90 10.36 -195.84 -2.03 -14.93 16 28 C 0.10 2.44 10.86 84.67 0.92 3.36 16 29 H 0.25 13.07 8.31 -92.71 -0.77 12.30 16 30 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.07 3.26 6.33 -2.38 -0.02 3.24 16 32 H 0.10 3.25 8.14 -2.39 -0.02 3.24 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 35 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.05 1.87 7.57 -2.39 -0.02 1.85 16 37 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.41 14.92 7.31 -92.71 -0.68 14.25 16 39 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 42 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 43 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 44 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 45 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 46 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -68.43 379.68 0.91 -67.52 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.31 Total: 29.62 kcal Atomic # 6 Polarization: 25.43 SS G_CDS: 6.76 Total: 32.19 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -5.58 Total: -118.42 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -2.62 Total: -54.22 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -68.43 0.91 -67.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501841939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.443 kcal (2) G-P(sol) polarization free energy of solvation -68.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds