Wall clock time and date at job start Tue Mar 31 2020 18:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00217 * 2 1 4 4 H 1.48497 * 109.47102 * 270.00323 * 3 2 1 5 5 H 1.48501 * 109.46823 * 29.99839 * 3 2 1 6 6 H 1.48495 * 109.46953 * 149.99923 * 3 2 1 7 7 C 1.38812 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00079 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99845 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99917 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47219 * 180.02562 * 10 9 7 12 12 O 1.42895 * 109.45732 * 65.02890 * 11 10 9 13 13 C 1.53045 * 109.46113 * 185.00284 * 11 10 9 14 14 C 1.53191 * 109.30956 * 181.38809 * 13 11 10 15 15 N 1.46926 * 108.77710 * 305.36182 * 14 13 11 16 16 C 1.34778 * 120.63248 * 233.59154 * 15 14 13 17 17 O 1.21276 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99865 * 180.02562 * 16 15 14 19 19 N 1.46501 * 109.47181 * 179.97438 * 18 16 15 20 20 C 1.35761 * 119.62485 * 89.99671 * 19 18 16 21 21 C 1.35346 * 120.70252 * 179.97438 * 20 19 18 22 22 C 1.40196 * 119.94872 * 359.97438 * 21 20 19 23 23 C 1.36400 * 119.26458 * 359.97438 * 22 21 20 24 24 C 1.34659 * 119.62348 * 270.21987 * 19 18 16 25 25 O 1.22061 * 119.98796 * 0.03541 * 24 19 18 26 26 C 1.46927 * 118.73792 * 53.86298 * 15 14 13 27 27 C 1.53038 * 109.45996 * 305.07248 * 11 10 9 28 28 H 0.97003 * 120.00006 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00212 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.46927 * 60.00486 * 10 9 7 31 31 H 1.08998 * 109.47555 * 300.00111 * 10 9 7 32 32 H 0.96702 * 114.00309 * 299.97248 * 12 11 10 33 33 H 1.09000 * 109.49694 * 61.43479 * 13 11 10 34 34 H 1.08995 * 109.49604 * 301.33795 * 13 11 10 35 35 H 1.09002 * 109.58417 * 185.57830 * 14 13 11 36 36 H 1.08993 * 109.59273 * 65.15044 * 14 13 11 37 37 H 1.09002 * 109.47271 * 59.99403 * 18 16 15 38 38 H 1.08999 * 109.47509 * 299.99655 * 18 16 15 39 39 H 1.08001 * 119.64874 * 359.97438 * 20 19 18 40 40 H 1.08000 * 120.02652 * 179.97438 * 21 20 19 41 41 H 1.07998 * 120.36756 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.34439 * 179.97438 * 23 22 21 43 43 H 1.09006 * 109.58563 * 65.92578 * 26 15 14 44 44 H 1.08997 * 109.59129 * 186.35433 * 26 15 14 45 45 H 1.09003 * 109.49789 * 298.56168 * 27 11 10 46 46 H 1.08998 * 109.49837 * 58.62642 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0014 9 7 3.3795 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0011 12 8 5.9804 -1.5453 1.2203 13 6 6.3802 -3.5117 -0.1269 14 6 7.8858 -3.2311 -0.0917 15 7 8.2078 -2.2460 -1.1331 16 6 9.1647 -2.5011 -2.0473 17 8 9.7696 -3.5517 -2.0150 18 6 9.4837 -1.4802 -3.1090 19 7 10.5511 -1.9911 -3.9727 20 6 10.2326 -2.7115 -5.0785 21 6 11.2011 -3.1934 -5.8919 22 6 12.5495 -2.9495 -5.5956 23 6 12.8675 -2.2246 -4.4847 24 6 11.8371 -1.7447 -3.6583 25 8 12.1077 -1.0995 -2.6581 26 6 7.4709 -0.9751 -1.1554 27 6 5.9661 -1.2832 -1.1820 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3622 -0.0007 30 1 3.8483 -3.0427 -0.8909 31 1 3.8490 -3.0424 0.8891 32 1 5.5334 -0.7004 1.3668 33 1 6.1217 -3.9931 -1.0701 34 1 6.1128 -4.1671 0.7019 35 1 8.4340 -4.1542 -0.2799 36 1 8.1606 -2.8331 0.8851 37 1 9.8113 -0.5544 -2.6361 38 1 8.5931 -1.2873 -3.7070 39 1 9.1954 -2.9019 -5.3116 40 1 10.9354 -3.7655 -6.7685 41 1 13.3277 -3.3305 -6.2401 42 1 13.9005 -2.0267 -4.2396 43 1 7.7126 -0.3969 -0.2635 44 1 7.7452 -0.4091 -2.0457 45 1 5.7116 -1.7856 -2.1153 46 1 5.4035 -0.3528 -1.1045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502895717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:53 Heat of formation + Delta-G solvation = -55.633522 kcal Electronic energy + Delta-G solvation = -29486.350903 eV Core-core repulsion = 25377.484718 eV Total energy + Delta-G solvation = -4108.866185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80149 -40.34735 -38.66308 -37.14009 -35.78821 -34.87702 -34.27448 -32.27951 -31.56305 -30.73731 -30.21790 -28.89199 -26.93189 -24.40050 -23.86233 -23.64176 -23.00851 -21.71136 -20.55679 -19.38743 -18.18577 -17.92217 -17.73821 -17.58135 -16.67857 -16.20661 -16.01854 -15.51340 -15.36880 -15.02438 -14.81251 -14.59429 -14.43557 -14.35162 -13.95821 -13.79348 -13.36327 -13.17321 -12.84335 -12.73838 -12.56634 -12.47337 -12.23948 -12.16246 -12.13310 -11.80646 -11.50455 -11.30924 -11.27865 -10.99989 -10.81771 -10.38569 -10.34797 -10.22954 -9.95522 -9.71769 -9.64406 -9.05508 -8.80023 -8.27872 -7.40100 -5.88920 -3.26602 0.51785 1.60733 2.11309 2.27342 2.77990 3.20932 3.24656 3.34207 3.40467 4.07803 4.18995 4.23422 4.30871 4.44999 4.51955 4.53799 4.69448 4.73373 4.82878 4.86113 4.94105 4.94643 5.01642 5.17502 5.28332 5.34791 5.43656 5.48014 5.59769 5.61324 5.72532 5.74968 5.78926 5.89351 5.95827 6.02605 6.14174 6.17162 6.32422 6.45468 6.51858 6.74246 7.10854 7.74472 7.78441 7.84090 7.87070 8.28489 9.05204 9.77006 9.94496 11.29267 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020005 B = 0.002589 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.339820 B =10811.685235 C =11200.167262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.133 3.867 11 C 0.125 3.875 12 O -0.558 6.558 13 C -0.115 4.115 14 C 0.119 3.881 15 N -0.601 5.601 16 C 0.504 3.496 17 O -0.533 6.533 18 C 0.069 3.931 19 N -0.480 5.480 20 C 0.143 3.857 21 C -0.234 4.234 22 C -0.015 4.015 23 C -0.243 4.243 24 C 0.519 3.481 25 O -0.551 6.551 26 C 0.107 3.893 27 C -0.159 4.159 28 H 0.261 0.739 29 H 0.357 0.643 30 H 0.035 0.965 31 H 0.038 0.962 32 H 0.379 0.621 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.161 0.839 40 H 0.146 0.854 41 H 0.134 0.866 42 H 0.148 0.852 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.986 -4.673 -11.822 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.006 3.994 11 C 0.084 3.916 12 O -0.365 6.365 13 C -0.154 4.154 14 C -0.003 4.003 15 N -0.335 5.335 16 C 0.290 3.710 17 O -0.410 6.410 18 C -0.056 4.056 19 N -0.190 5.190 20 C 0.016 3.984 21 C -0.257 4.257 22 C -0.037 4.037 23 C -0.265 4.265 24 C 0.321 3.679 25 O -0.434 6.434 26 C -0.015 4.015 27 C -0.198 4.198 28 H 0.071 0.929 29 H 0.191 0.809 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.227 0.773 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.178 0.822 40 H 0.164 0.836 41 H 0.152 0.848 42 H 0.165 0.835 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 22.591 -5.408 -11.062 25.729 hybrid contribution -0.158 1.731 -0.123 1.742 sum 22.433 -3.677 -11.185 25.335 Atomic orbital electron populations 1.69694 1.05114 1.25945 1.57067 1.24699 0.95260 0.97209 1.01866 0.86566 0.79108 0.85097 0.77697 1.21019 1.21556 1.20522 1.19024 0.80388 0.94815 1.43495 0.89156 1.42690 1.04221 1.01755 1.91383 1.21305 0.88572 0.89853 0.99697 1.21380 0.94436 0.92086 0.83672 1.86424 1.70104 1.39747 1.40189 1.21844 0.94117 0.96030 1.03377 1.21572 0.95436 0.92736 0.90576 1.48072 1.36547 1.18887 1.29977 1.20574 0.79846 0.87965 0.82582 1.90731 1.50325 1.26246 1.73676 1.21889 0.91589 0.98773 0.93362 1.45087 1.08325 1.44379 1.21233 1.21949 1.01129 0.89937 0.85367 1.20637 0.92266 1.09002 1.03751 1.21444 0.96527 0.91270 0.94410 1.22089 0.99775 1.06644 0.97965 1.17164 0.81681 0.82062 0.86976 1.90964 1.81892 1.42452 1.28054 1.21913 0.91913 0.84762 1.02952 1.22651 0.94704 1.02068 1.00363 0.92907 0.80936 0.94709 0.94373 0.77261 0.90213 0.89583 0.89195 0.90355 0.85196 0.85901 0.82184 0.83639 0.84769 0.83458 0.90053 0.90148 0.90154 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.21 13.97 55.49 0.78 -27.44 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.89 20.54 27.74 -169.99 -4.71 15.83 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -5.83 6.52 56.52 0.37 -5.46 16 7 C -0.25 -6.62 10.47 -15.06 -0.16 -6.77 16 8 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 9 N -0.75 -16.06 4.87 -59.90 -0.29 -16.36 16 10 C 0.13 2.33 5.43 -4.04 -0.02 2.31 16 11 C 0.13 1.70 0.71 -90.57 -0.06 1.64 16 12 O -0.56 -7.95 11.70 -35.23 -0.41 -8.37 16 13 C -0.12 -1.37 5.11 -26.61 -0.14 -1.51 16 14 C 0.12 1.43 6.19 -3.71 -0.02 1.41 16 15 N -0.60 -6.87 2.97 -172.50 -0.51 -7.38 16 16 C 0.50 6.22 7.76 -10.99 -0.09 6.14 16 17 O -0.53 -8.52 15.84 5.56 0.09 -8.43 16 18 C 0.07 0.64 4.16 -5.19 -0.02 0.62 16 19 N -0.48 -4.93 2.07 -121.06 -0.25 -5.18 16 20 C 0.14 1.04 10.28 -16.84 -0.17 0.87 16 21 C -0.23 -1.47 10.01 -39.88 -0.40 -1.87 16 22 C -0.01 -0.10 10.10 -39.51 -0.40 -0.50 16 23 C -0.24 -2.44 9.99 -39.38 -0.39 -2.83 16 24 C 0.52 6.75 7.40 -15.45 -0.11 6.63 16 25 O -0.55 -9.23 16.64 4.86 0.08 -9.15 16 26 C 0.11 1.06 6.13 -3.48 -0.02 1.04 16 27 C -0.16 -1.88 4.89 -26.39 -0.13 -2.01 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.36 7.15 3.41 -40.82 -0.14 7.01 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.38 5.21 8.19 45.56 0.37 5.58 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.14 7.01 -51.93 -0.36 0.78 16 36 H 0.08 0.99 7.81 -51.93 -0.41 0.59 16 37 H 0.13 1.21 7.18 -51.93 -0.37 0.84 16 38 H 0.12 0.65 7.57 -51.93 -0.39 0.26 16 39 H 0.16 0.66 8.04 -52.49 -0.42 0.24 16 40 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.08 0.83 7.81 -51.93 -0.41 0.42 16 44 H 0.08 0.57 5.93 -51.93 -0.31 0.26 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.08 1.10 6.53 -51.93 -0.34 0.76 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -36.87 371.40 -7.63 -44.50 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -5.75 Total: 11.18 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -2.24 Total: 5.21 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.28 Total: -56.36 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.24 Total: -25.95 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.71 Total: 15.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.87 -7.63 -44.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502895717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.137 kcal (2) G-P(sol) polarization free energy of solvation -36.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds