Wall clock time and date at job start Tue Mar 31 2020 18:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86796 * 119.99836 * 2 1 4 4 H 1.48498 * 109.47410 * 240.00468 * 3 2 1 5 5 H 1.48502 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47267 * 120.00330 * 3 2 1 7 7 C 1.40022 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.41335 * 120.00341 * 359.97438 * 7 2 1 10 10 C 1.40608 * 119.78858 * 179.97438 * 9 7 2 11 11 C 1.38313 * 119.12791 * 180.02562 * 10 9 7 12 12 C 1.38691 * 118.67194 * 359.72927 * 11 10 9 13 13 C 1.39642 * 119.49349 * 0.53640 * 12 11 10 14 14 N 1.39253 * 119.57389 * 179.72162 * 13 12 11 15 15 C 1.34779 * 120.00089 * 185.40097 * 14 13 12 16 16 O 1.21581 * 119.99885 * 354.86384 * 15 14 13 17 17 N 1.34769 * 120.00097 * 175.13410 * 15 14 13 18 18 O 1.41603 * 120.00067 * 179.72503 * 17 15 14 19 19 C 1.42902 * 113.99778 * 180.02562 * 18 17 15 20 20 H 1.08998 * 109.47691 * 35.00340 * 19 18 17 21 21 C 1.53004 * 109.47169 * 274.99820 * 19 18 17 22 22 O 1.42896 * 109.47503 * 295.00674 * 21 19 18 23 23 C 1.53008 * 109.46838 * 155.00629 * 19 18 17 24 24 C 1.54259 * 110.03624 * 57.16451 * 23 19 18 25 25 C 1.54885 * 104.19940 * 217.10845 * 24 23 19 26 26 C 1.54895 * 102.74920 * 37.94003 * 25 24 23 27 27 C 1.53878 * 110.02896 * 299.99750 * 23 19 18 28 28 N 1.31933 * 120.85034 * 359.45493 * 13 12 11 29 29 H 0.97003 * 120.00567 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.43399 * 359.97438 * 10 9 7 31 31 H 1.07998 * 120.66772 * 180.02562 * 11 10 9 32 32 H 1.07993 * 120.25680 * 180.27790 * 12 11 10 33 33 H 0.96999 * 119.99891 * 5.41411 * 14 13 12 34 34 H 0.96998 * 120.00050 * 359.73083 * 17 15 14 35 35 H 1.09001 * 109.46844 * 55.00365 * 21 19 18 36 36 H 1.08998 * 109.46712 * 174.99621 * 21 19 18 37 37 H 0.96699 * 113.99695 * 180.02562 * 22 21 19 38 38 H 1.09004 * 110.01356 * 178.60882 * 23 19 18 39 39 H 1.09001 * 110.48538 * 335.78819 * 24 23 19 40 40 H 1.09004 * 110.48660 * 98.42534 * 24 23 19 41 41 H 1.09003 * 110.75207 * 279.63118 * 25 24 23 42 42 H 1.08993 * 110.91795 * 156.32929 * 25 24 23 43 43 H 1.08994 * 110.48795 * 203.38238 * 26 25 24 44 44 H 1.08998 * 110.59802 * 80.79065 * 26 25 24 45 45 H 1.09002 * 110.03157 * 238.57060 * 27 23 19 46 46 H 1.09006 * 110.03337 * 359.94928 * 27 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0950 1.6965 -1.2125 5 1 1.2763 2.7464 0.0006 6 1 3.0952 1.6964 1.2124 7 6 2.0075 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3009 -2.4367 -0.0005 10 6 2.0085 -3.6517 -0.0016 11 6 1.3033 -4.8415 -0.0022 12 6 -0.0828 -4.7935 0.0042 13 6 -0.7278 -3.5550 -0.0005 14 7 -2.1194 -3.5048 -0.0001 15 6 -2.7511 -2.3197 -0.1144 16 8 -2.1093 -1.2872 -0.1240 17 7 -4.0946 -2.2790 -0.2127 18 8 -4.7587 -1.0335 -0.3270 19 6 -6.1805 -1.1396 -0.4224 20 1 -6.5247 -1.9732 0.1897 21 6 -6.5773 -1.3797 -1.8805 22 8 -6.2302 -0.2357 -2.6633 23 6 -6.8232 0.1572 0.0740 24 6 -6.2905 1.3556 -0.7382 25 6 -6.1721 2.4970 0.3021 26 6 -5.6756 1.7555 1.5681 27 6 -6.4322 0.4114 1.5404 28 7 -0.0357 -2.4317 -0.0001 29 1 -0.4851 0.8400 0.0004 30 1 3.0885 -3.6559 -0.0029 31 1 1.8215 -5.7891 -0.0026 32 1 -0.6589 -5.7069 0.0084 33 1 -2.6342 -4.3228 0.0827 34 1 -4.6067 -3.1027 -0.2051 35 1 -6.0497 -2.2542 -2.2613 36 1 -7.6524 -1.5491 -1.9412 37 1 -6.4539 -0.3179 -3.6004 38 1 -7.9076 0.0952 -0.0180 39 1 -5.3140 1.1243 -1.1636 40 1 -6.9953 1.6273 -1.5241 41 1 -7.1431 2.9589 0.4809 42 1 -5.4447 3.2424 -0.0192 43 1 -5.9316 2.3189 2.4653 44 1 -4.5996 1.5886 1.5176 45 1 -7.3269 0.4737 2.1599 46 1 -5.7854 -0.3896 1.8987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001563221892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:04 Heat of formation + Delta-G solvation = -36.167607 kcal Electronic energy + Delta-G solvation = -29931.306509 eV Core-core repulsion = 25823.284430 eV Total energy + Delta-G solvation = -4108.022079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.07657 -40.31527 -39.29405 -37.57033 -37.04124 -35.83794 -34.83882 -33.29640 -32.17569 -31.44154 -30.20784 -29.51724 -28.03837 -27.39334 -24.09682 -23.26653 -23.07446 -21.75767 -21.52283 -20.75886 -19.80595 -18.98702 -18.69463 -18.13990 -17.62182 -16.87993 -16.53582 -16.33945 -16.23131 -16.18465 -15.60443 -15.32363 -15.16489 -14.88368 -14.66045 -14.21373 -14.13359 -14.01027 -13.88066 -13.68425 -13.35420 -12.89244 -12.71771 -12.60559 -12.54644 -12.29553 -12.01015 -11.78521 -11.78111 -11.67049 -11.56408 -11.50283 -11.40832 -11.15051 -10.87768 -10.85168 -10.81611 -9.87880 -9.63247 -9.09280 -8.78650 -7.99827 -6.39137 0.75872 0.99460 1.31294 1.38161 1.50787 1.53739 2.27071 2.56959 2.88371 3.05782 3.40048 3.56961 3.64229 3.68003 3.90880 4.09844 4.14784 4.23227 4.36979 4.39868 4.54032 4.61358 4.67423 4.71871 4.77513 4.79485 4.85069 4.86718 4.90472 4.99619 5.03313 5.08083 5.11739 5.25142 5.26942 5.44566 5.47906 5.63397 5.68604 5.81669 5.88412 5.96767 6.13739 6.34759 6.44734 6.83632 6.94951 7.09165 7.20735 8.04669 8.39906 8.59794 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011295 B = 0.003899 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.360272 B = 7180.347376 C = 8846.665247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.684 5.684 2 C 0.009 3.991 3 Si 0.970 3.030 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.467 4.467 8 H 0.087 0.913 9 C 0.238 3.762 10 C -0.329 4.329 11 C -0.033 4.033 12 C -0.340 4.340 13 C 0.366 3.634 14 N -0.649 5.649 15 C 0.672 3.328 16 O -0.503 6.503 17 N -0.609 5.609 18 O -0.134 6.134 19 C 0.053 3.947 20 H 0.112 0.888 21 C 0.055 3.945 22 O -0.575 6.575 23 C -0.072 4.072 24 C -0.093 4.093 25 C -0.128 4.128 26 C -0.127 4.127 27 C -0.116 4.116 28 N -0.510 5.510 29 H 0.266 0.734 30 H 0.105 0.895 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.420 0.580 34 H 0.411 0.589 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.386 0.614 38 H 0.119 0.881 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.028 0.972 45 H 0.088 0.912 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.594 -3.615 -1.244 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.303 5.303 2 C -0.217 4.217 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.498 4.498 8 H 0.105 0.895 9 C 0.113 3.887 10 C -0.352 4.352 11 C -0.057 4.057 12 C -0.365 4.365 13 C 0.127 3.873 14 N -0.304 5.304 15 C 0.370 3.630 16 O -0.368 6.368 17 N -0.319 5.319 18 O -0.137 6.137 19 C -0.005 4.005 20 H 0.129 0.871 21 C -0.023 4.023 22 O -0.382 6.382 23 C -0.091 4.091 24 C -0.130 4.130 25 C -0.165 4.165 26 C -0.165 4.165 27 C -0.154 4.154 28 N -0.229 5.229 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.258 0.742 34 H 0.254 0.746 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.235 0.765 38 H 0.137 0.863 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.047 0.953 45 H 0.106 0.894 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.389 -1.233 -0.703 20.439 hybrid contribution 0.241 -1.119 -0.552 1.271 sum -20.148 -2.352 -1.255 20.324 Atomic orbital electron populations 1.70546 1.07139 1.27769 1.24837 1.27056 0.95943 1.04017 0.94679 0.85457 0.78630 0.76729 0.80081 1.18215 1.20479 1.18112 1.19882 0.94460 0.90458 1.45028 0.89475 1.18847 0.87777 0.93433 0.88657 1.21813 0.99259 0.93793 1.20353 1.21042 0.93462 0.97336 0.93854 1.20893 0.95087 0.95348 1.25222 1.18765 0.83605 0.91198 0.93780 1.42067 1.03870 1.08057 1.76367 1.16119 0.80757 0.85438 0.80691 1.91402 1.63261 1.31721 1.50437 1.46050 1.02836 1.00110 1.82928 1.90771 1.19405 1.07249 1.96248 1.23175 0.80296 1.01018 0.96031 0.87066 1.22769 1.00206 0.88344 0.90967 1.86747 1.86868 1.40068 1.24535 1.21881 1.00431 0.92359 0.94423 1.22134 1.00866 0.93459 0.96585 1.22578 1.01081 0.97615 0.95241 1.22304 0.98596 0.96920 0.98666 1.22155 1.00126 0.96776 0.96307 1.68613 1.07431 1.25566 1.21314 0.92338 0.87678 0.84187 0.84540 0.74180 0.74650 0.93741 0.89417 0.76520 0.86345 0.93961 0.90526 0.89620 0.93376 0.90925 0.95344 0.89385 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -42.43 8.99 21.84 0.20 -42.24 16 2 C 0.01 0.51 5.50 85.29 0.47 0.97 16 3 Si 0.97 43.29 29.56 68.60 2.03 45.32 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 7 C -0.47 -27.68 9.14 23.47 0.21 -27.47 16 8 H 0.09 4.79 7.85 -2.91 -0.02 4.77 16 9 C 0.24 14.20 6.55 40.20 0.26 14.46 16 10 C -0.33 -16.88 9.83 22.87 0.22 -16.65 16 11 C -0.03 -1.42 10.15 22.40 0.23 -1.19 16 12 C -0.34 -14.39 9.95 22.72 0.23 -14.17 16 13 C 0.37 18.08 7.43 133.24 0.99 19.07 16 14 N -0.65 -25.62 5.39 -322.13 -1.74 -27.35 16 15 C 0.67 29.73 8.67 179.06 1.55 31.28 16 16 O -0.50 -29.18 12.51 13.39 0.17 -29.01 16 17 N -0.61 -19.51 6.38 -184.76 -1.18 -20.69 16 18 O -0.13 -4.52 9.16 -16.48 -0.15 -4.67 16 19 C 0.05 1.11 2.31 30.60 0.07 1.18 16 20 H 0.11 1.64 7.94 -2.39 -0.02 1.62 16 21 C 0.06 0.94 6.92 71.98 0.50 1.43 16 22 O -0.57 -12.26 9.90 -144.34 -1.43 -13.69 16 23 C -0.07 -1.43 2.83 -10.07 -0.03 -1.46 16 24 C -0.09 -2.34 4.43 31.67 0.14 -2.20 16 25 C -0.13 -3.11 6.91 31.89 0.22 -2.89 16 26 C -0.13 -3.41 6.83 31.67 0.22 -3.20 16 27 C -0.12 -2.59 6.22 31.32 0.19 -2.40 16 28 N -0.51 -30.46 5.74 -186.37 -1.07 -31.53 16 29 H 0.27 16.02 8.29 -92.71 -0.77 15.25 16 30 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 31 H 0.14 4.79 8.06 -2.91 -0.02 4.76 16 32 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 33 H 0.42 11.47 8.71 -92.71 -0.81 10.66 16 34 H 0.41 8.64 8.45 -92.71 -0.78 7.86 16 35 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.39 4.93 9.12 -74.06 -0.68 4.25 16 38 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.04 1.47 6.23 -2.39 -0.01 1.46 16 40 H 0.08 1.69 7.55 -2.38 -0.02 1.67 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.05 1.25 7.42 -2.38 -0.02 1.23 16 Total: -1.00 -87.18 373.48 1.07 -86.11 By element: Atomic # 1 Polarization: 42.22 SS G_CDS: -1.23 Total: 40.99 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 5.48 Total: -3.23 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -3.79 Total: -121.81 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -1.41 Total: -47.38 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -87.18 1.07 -86.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563221892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.940 kcal (2) G-P(sol) polarization free energy of solvation -87.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds