Wall clock time and date at job start Tue Mar 31 2020 18:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86802 * 119.99756 * 2 1 4 4 H 1.48497 * 109.47481 * 180.02562 * 3 2 1 5 5 H 1.48511 * 109.47035 * 300.00085 * 3 2 1 6 6 H 1.48499 * 109.47314 * 59.99647 * 3 2 1 7 7 C 1.40024 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.41330 * 120.00188 * 359.97438 * 7 2 1 10 10 C 1.40606 * 119.79155 * 179.97438 * 9 7 2 11 11 C 1.38304 * 119.13435 * 180.02562 * 10 9 7 12 12 C 1.38697 * 118.66768 * 359.72913 * 11 10 9 13 13 C 1.39641 * 119.49591 * 0.55880 * 12 11 10 14 14 N 1.39245 * 119.57533 * 179.70510 * 13 12 11 15 15 C 1.34779 * 119.99852 * 185.40406 * 14 13 12 16 16 O 1.21574 * 120.00040 * 354.85779 * 15 14 13 17 17 N 1.34771 * 119.99833 * 174.85773 * 15 14 13 18 18 O 1.41601 * 120.00281 * 179.97438 * 17 15 14 19 19 C 1.42899 * 114.00294 * 179.97438 * 18 17 15 20 20 H 1.08992 * 109.47113 * 325.00460 * 19 18 17 21 21 C 1.53002 * 109.46625 * 85.00449 * 19 18 17 22 22 O 1.42899 * 109.47381 * 65.00151 * 21 19 18 23 23 C 1.53000 * 109.47051 * 205.00059 * 19 18 17 24 24 C 1.54275 * 110.03017 * 177.17178 * 23 19 18 25 25 C 1.54889 * 104.19393 * 217.10820 * 24 23 19 26 26 C 1.54893 * 102.75073 * 37.93791 * 25 24 23 27 27 C 1.53868 * 110.03287 * 60.00523 * 23 19 18 28 28 N 1.31930 * 120.84580 * 359.42802 * 13 12 11 29 29 H 0.96998 * 120.00506 * 359.97438 * 1 2 3 30 30 H 1.08010 * 120.43372 * 359.97438 * 10 9 7 31 31 H 1.08001 * 120.66852 * 180.02562 * 11 10 9 32 32 H 1.08004 * 120.25328 * 180.28352 * 12 11 10 33 33 H 0.97003 * 119.99997 * 5.40694 * 14 13 12 34 34 H 0.97003 * 120.00272 * 0.02562 * 17 15 14 35 35 H 1.08996 * 109.47276 * 304.99609 * 21 19 18 36 36 H 1.09003 * 109.47022 * 184.99915 * 21 19 18 37 37 H 0.96698 * 114.00106 * 179.97438 * 22 21 19 38 38 H 1.08997 * 110.01951 * 298.60852 * 23 19 18 39 39 H 1.09002 * 110.48051 * 335.78208 * 24 23 19 40 40 H 1.08997 * 110.48490 * 98.42469 * 24 23 19 41 41 H 1.09000 * 110.75397 * 279.62591 * 25 24 23 42 42 H 1.08997 * 110.91718 * 156.33028 * 25 24 23 43 43 H 1.08997 * 110.49098 * 203.37859 * 26 25 24 44 44 H 1.09006 * 110.59550 * 80.79588 * 26 25 24 45 45 H 1.08996 * 110.03307 * 238.56995 * 27 23 19 46 46 H 1.09001 * 110.03200 * 359.97438 * 27 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3466 -0.0006 5 1 1.8825 2.3965 -1.2126 6 1 1.8825 2.3965 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0877 -1.2125 0.0001 9 6 1.3011 -2.4366 0.0016 10 6 2.0087 -3.6517 0.0016 11 6 1.3036 -4.8415 0.0022 12 6 -0.0825 -4.7935 0.0085 13 6 -0.7276 -3.5550 0.0022 14 7 -2.1192 -3.5049 0.0022 15 6 -2.7508 -2.3200 -0.1137 16 8 -2.1091 -1.2875 -0.1242 17 7 -4.0939 -2.2797 -0.2180 18 8 -4.7577 -1.0348 -0.3392 19 6 -6.1790 -1.1414 -0.4417 20 1 -6.4365 -2.0399 -1.0024 21 6 -6.7865 -1.2234 0.9602 22 8 -6.5485 0.0024 1.6550 23 6 -6.7317 0.0877 -1.1659 24 6 -8.2579 -0.0473 -1.3465 25 6 -8.5316 0.5709 -2.7401 26 6 -7.3093 0.1022 -3.5680 27 6 -6.1287 0.1828 -2.5783 28 7 -0.0356 -2.4318 0.0017 29 1 -0.4851 0.8400 0.0004 30 1 3.0888 -3.6558 0.0004 31 1 1.8219 -5.7890 0.0026 32 1 -0.6586 -5.7070 0.0136 33 1 -2.6339 -4.3229 0.0858 34 1 -4.6060 -3.1035 -0.2092 35 1 -6.3273 -2.0465 1.5076 36 1 -7.8603 -1.3938 0.8814 37 1 -6.9074 0.0218 2.5527 38 1 -6.5005 0.9899 -0.5997 39 1 -8.5526 -1.0966 -1.3301 40 1 -8.7845 0.5100 -0.5718 41 1 -8.5636 1.6588 -2.6805 42 1 -9.4573 0.1814 -3.1636 43 1 -7.1436 0.7686 -4.4145 44 1 -7.4494 -0.9225 -3.9122 45 1 -5.6054 1.1314 -2.6978 46 1 -5.4419 -0.6465 -2.7476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001563221893.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:09 Heat of formation + Delta-G solvation = -14.494908 kcal Electronic energy + Delta-G solvation = -29403.323490 eV Core-core repulsion = 25296.241209 eV Total energy + Delta-G solvation = -4107.082280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.59730 -39.08481 -37.61322 -36.81882 -35.98530 -33.96675 -32.94309 -32.04066 -30.35403 -30.11085 -28.87461 -28.43109 -27.13977 -25.43547 -22.69053 -22.09711 -21.20879 -20.78913 -20.24954 -19.55530 -18.14601 -17.99068 -17.29672 -16.72076 -16.16868 -15.83950 -15.66433 -14.87911 -14.63471 -14.48889 -14.36690 -14.17912 -13.72277 -13.53440 -13.47455 -13.01469 -12.92770 -12.78173 -12.19910 -11.97298 -11.89275 -11.60893 -11.35683 -11.26521 -11.18343 -11.10379 -10.87181 -10.84317 -10.57463 -10.54621 -10.40708 -10.37075 -10.14128 -9.84546 -9.64923 -9.06020 -8.97526 -8.25817 -7.90420 -7.16195 -6.91634 -6.03323 -4.32547 2.07595 2.89882 3.18365 3.24921 3.28420 3.33239 4.02176 4.14653 4.26959 4.28201 4.37193 4.41929 4.60614 4.75004 4.82774 4.95724 5.02648 5.07523 5.22522 5.28592 5.41397 5.45293 5.53902 5.57412 5.61861 5.72191 5.82565 5.97656 6.09568 6.12799 6.12946 6.26396 6.33686 6.50201 6.59827 6.81300 6.89713 7.17693 7.34453 7.42207 7.51304 7.65920 7.75661 7.86331 8.21399 8.35105 8.65155 8.86540 9.12084 9.65444 10.32338 10.57828 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.003240 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.299064 B = 8640.115784 C = 9785.890578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.645 5.645 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.423 4.423 8 H 0.083 0.917 9 C 0.270 3.730 10 C -0.306 4.306 11 C -0.035 4.035 12 C -0.358 4.358 13 C 0.390 3.610 14 N -0.664 5.664 15 C 0.677 3.323 16 O -0.439 6.439 17 N -0.631 5.631 18 O -0.105 6.105 19 C 0.070 3.930 20 H 0.083 0.917 21 C 0.054 3.946 22 O -0.555 6.555 23 C -0.077 4.077 24 C -0.113 4.113 25 C -0.124 4.124 26 C -0.126 4.126 27 C -0.121 4.121 28 N -0.473 5.473 29 H 0.274 0.726 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.395 0.605 34 H 0.386 0.614 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.375 0.625 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.783 -2.700 -1.590 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.263 5.263 2 C -0.175 4.175 3 Si 0.718 3.282 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.453 4.453 8 H 0.101 0.899 9 C 0.146 3.854 10 C -0.329 4.329 11 C -0.060 4.060 12 C -0.385 4.385 13 C 0.150 3.850 14 N -0.317 5.317 15 C 0.375 3.625 16 O -0.300 6.300 17 N -0.341 5.341 18 O -0.107 6.107 19 C 0.011 3.989 20 H 0.101 0.899 21 C -0.025 4.025 22 O -0.360 6.360 23 C -0.097 4.097 24 C -0.151 4.151 25 C -0.162 4.162 26 C -0.163 4.163 27 C -0.158 4.158 28 N -0.191 5.191 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.228 0.772 34 H 0.224 0.776 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.222 0.778 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.390 -0.283 -2.191 19.515 hybrid contribution -0.402 -1.360 0.654 1.561 sum -19.792 -1.643 -1.537 19.919 Atomic orbital electron populations 1.70310 1.05576 1.27597 1.22841 1.26202 0.95132 1.00555 0.95628 0.86490 0.80796 0.82473 0.78400 1.18651 1.20085 1.20077 1.19623 0.94060 0.89368 1.42269 0.89908 1.18380 0.87019 0.92002 0.88042 1.21616 0.98538 0.93513 1.19235 1.20532 0.93066 0.96510 0.95850 1.20376 0.94706 0.94582 1.28793 1.18236 0.81868 0.90975 0.93885 1.42310 1.05153 1.07132 1.77069 1.15892 0.79429 0.85924 0.81243 1.91408 1.61197 1.29576 1.47795 1.46667 1.04108 0.98580 1.84768 1.90731 1.16377 1.07633 1.95965 1.22779 0.82218 0.99900 0.94031 0.89924 1.22762 0.98536 0.87375 0.93818 1.86596 1.82197 1.36090 1.31073 1.21698 0.94281 0.97695 0.96025 1.22377 0.94384 1.00808 0.97483 1.22487 0.97938 1.00643 0.95107 1.22393 0.94875 1.01083 0.97994 1.22181 0.97503 1.03169 0.92991 1.68648 1.06998 1.23122 1.20366 0.91394 0.88567 0.88594 0.89124 0.77218 0.77626 0.93436 0.92940 0.77838 0.88925 0.91735 0.91306 0.91386 0.91647 0.91713 0.91840 0.91326 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.88 8.99 55.55 0.50 -18.38 16 2 C 0.05 1.50 5.50 -17.35 -0.10 1.40 16 3 Si 0.89 20.05 29.56 -169.99 -5.02 15.02 16 4 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.42 -11.95 9.14 -37.74 -0.34 -12.30 16 8 H 0.08 2.18 7.85 -52.48 -0.41 1.77 16 9 C 0.27 7.78 6.55 -85.00 -0.56 7.23 16 10 C -0.31 -7.82 9.83 -38.66 -0.38 -8.20 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 12 C -0.36 -8.09 9.95 -38.89 -0.39 -8.47 16 13 C 0.39 9.70 7.43 -154.99 -1.15 8.55 16 14 N -0.66 -13.42 5.39 -15.79 -0.09 -13.50 16 15 C 0.68 14.85 8.67 -86.92 -0.75 14.10 16 16 O -0.44 -12.21 12.51 -12.85 -0.16 -12.37 16 17 N -0.63 -10.42 6.38 27.63 0.18 -10.24 16 18 O -0.11 -1.82 10.15 -34.80 -0.35 -2.17 16 19 C 0.07 0.83 1.87 -26.73 -0.05 0.78 16 20 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 21 C 0.05 0.54 6.63 37.16 0.25 0.79 16 22 O -0.56 -6.63 12.74 -40.08 -0.51 -7.14 16 23 C -0.08 -0.87 2.53 -89.50 -0.23 -1.10 16 24 C -0.11 -0.93 5.41 -25.07 -0.14 -1.07 16 25 C -0.12 -0.98 6.91 -24.74 -0.17 -1.15 16 26 C -0.13 -1.15 6.83 -25.07 -0.17 -1.32 16 27 C -0.12 -1.43 6.22 -25.62 -0.16 -1.59 16 28 N -0.47 -13.70 5.74 -10.26 -0.06 -13.76 16 29 H 0.27 7.65 8.29 -40.82 -0.34 7.32 16 30 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 31 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 33 H 0.39 5.90 8.71 -40.82 -0.36 5.54 16 34 H 0.39 4.52 8.45 -40.82 -0.34 4.18 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.38 7.44 -51.93 -0.39 0.00 16 37 H 0.38 2.74 9.12 45.56 0.42 3.15 16 38 H 0.09 1.25 7.54 -51.93 -0.39 0.86 16 39 H 0.06 0.46 7.74 -51.93 -0.40 0.06 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.07 0.96 7.42 -51.93 -0.39 0.57 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -37.16 378.04 -10.59 -47.75 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -6.04 Total: 12.67 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -4.74 Total: -3.57 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.53 Total: -55.89 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -1.02 Total: -21.68 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.16 -10.59 -47.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563221893.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.253 kcal (2) G-P(sol) polarization free energy of solvation -37.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds