Wall clock time and date at job start Tue Mar 31 2020 18:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86802 * 119.99756 * 2 1 4 4 H 1.48497 * 109.47481 * 180.02562 * 3 2 1 5 5 H 1.48511 * 109.47035 * 300.00085 * 3 2 1 6 6 H 1.48499 * 109.47314 * 59.99647 * 3 2 1 7 7 C 1.40024 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.41330 * 120.00188 * 359.97438 * 7 2 1 10 10 C 1.40606 * 119.79155 * 179.97438 * 9 7 2 11 11 C 1.38304 * 119.13435 * 180.02562 * 10 9 7 12 12 C 1.38697 * 118.66768 * 359.72913 * 11 10 9 13 13 C 1.39641 * 119.49591 * 0.55880 * 12 11 10 14 14 N 1.39245 * 119.57533 * 179.70510 * 13 12 11 15 15 C 1.34779 * 119.99852 * 185.40406 * 14 13 12 16 16 O 1.21574 * 120.00040 * 354.85779 * 15 14 13 17 17 N 1.34771 * 119.99833 * 174.85773 * 15 14 13 18 18 O 1.41601 * 120.00281 * 179.97438 * 17 15 14 19 19 C 1.42899 * 114.00294 * 179.97438 * 18 17 15 20 20 H 1.08992 * 109.47113 * 325.00460 * 19 18 17 21 21 C 1.53002 * 109.46625 * 85.00449 * 19 18 17 22 22 O 1.42899 * 109.47381 * 65.00151 * 21 19 18 23 23 C 1.53000 * 109.47051 * 205.00059 * 19 18 17 24 24 C 1.54275 * 110.03017 * 177.17178 * 23 19 18 25 25 C 1.54889 * 104.19393 * 217.10820 * 24 23 19 26 26 C 1.54893 * 102.75073 * 37.93791 * 25 24 23 27 27 C 1.53868 * 110.03287 * 60.00523 * 23 19 18 28 28 N 1.31930 * 120.84580 * 359.42802 * 13 12 11 29 29 H 0.96998 * 120.00506 * 359.97438 * 1 2 3 30 30 H 1.08010 * 120.43372 * 359.97438 * 10 9 7 31 31 H 1.08001 * 120.66852 * 180.02562 * 11 10 9 32 32 H 1.08004 * 120.25328 * 180.28352 * 12 11 10 33 33 H 0.97003 * 119.99997 * 5.40694 * 14 13 12 34 34 H 0.97003 * 120.00272 * 0.02562 * 17 15 14 35 35 H 1.08996 * 109.47276 * 304.99609 * 21 19 18 36 36 H 1.09003 * 109.47022 * 184.99915 * 21 19 18 37 37 H 0.96698 * 114.00106 * 179.97438 * 22 21 19 38 38 H 1.08997 * 110.01951 * 298.60852 * 23 19 18 39 39 H 1.09002 * 110.48051 * 335.78208 * 24 23 19 40 40 H 1.08997 * 110.48490 * 98.42469 * 24 23 19 41 41 H 1.09000 * 110.75397 * 279.62591 * 25 24 23 42 42 H 1.08997 * 110.91718 * 156.33028 * 25 24 23 43 43 H 1.08997 * 110.49098 * 203.37859 * 26 25 24 44 44 H 1.09006 * 110.59550 * 80.79588 * 26 25 24 45 45 H 1.08996 * 110.03307 * 238.56995 * 27 23 19 46 46 H 1.09001 * 110.03200 * 359.97438 * 27 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3466 -0.0006 5 1 1.8825 2.3965 -1.2126 6 1 1.8825 2.3965 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0877 -1.2125 0.0001 9 6 1.3011 -2.4366 0.0016 10 6 2.0087 -3.6517 0.0016 11 6 1.3036 -4.8415 0.0022 12 6 -0.0825 -4.7935 0.0085 13 6 -0.7276 -3.5550 0.0022 14 7 -2.1192 -3.5049 0.0022 15 6 -2.7508 -2.3200 -0.1137 16 8 -2.1091 -1.2875 -0.1242 17 7 -4.0939 -2.2797 -0.2180 18 8 -4.7577 -1.0348 -0.3392 19 6 -6.1790 -1.1414 -0.4417 20 1 -6.4365 -2.0399 -1.0024 21 6 -6.7865 -1.2234 0.9602 22 8 -6.5485 0.0024 1.6550 23 6 -6.7317 0.0877 -1.1659 24 6 -8.2579 -0.0473 -1.3465 25 6 -8.5316 0.5709 -2.7401 26 6 -7.3093 0.1022 -3.5680 27 6 -6.1287 0.1828 -2.5783 28 7 -0.0356 -2.4318 0.0017 29 1 -0.4851 0.8400 0.0004 30 1 3.0888 -3.6558 0.0004 31 1 1.8219 -5.7890 0.0026 32 1 -0.6586 -5.7070 0.0136 33 1 -2.6339 -4.3229 0.0858 34 1 -4.6060 -3.1035 -0.2092 35 1 -6.3273 -2.0465 1.5076 36 1 -7.8603 -1.3938 0.8814 37 1 -6.9074 0.0218 2.5527 38 1 -6.5005 0.9899 -0.5997 39 1 -8.5526 -1.0966 -1.3301 40 1 -8.7845 0.5100 -0.5718 41 1 -8.5636 1.6588 -2.6805 42 1 -9.4573 0.1814 -3.1636 43 1 -7.1436 0.7686 -4.4145 44 1 -7.4494 -0.9225 -3.9122 45 1 -5.6054 1.1314 -2.6978 46 1 -5.4419 -0.6465 -2.7476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001563221893.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:08 Heat of formation + Delta-G solvation = -40.875504 kcal Electronic energy + Delta-G solvation = -29404.467438 eV Core-core repulsion = 25296.241209 eV Total energy + Delta-G solvation = -4108.226229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.09620 -40.30219 -39.32366 -37.80952 -37.11722 -35.85552 -34.85345 -33.35042 -32.18237 -31.47515 -30.28524 -29.57866 -27.94573 -27.40031 -24.14596 -23.37952 -23.08041 -21.78389 -21.49013 -20.71988 -19.78560 -19.33146 -18.60905 -18.15773 -17.57708 -17.08120 -16.53442 -16.41077 -16.23787 -16.18317 -15.60243 -15.48072 -15.35775 -14.84866 -14.66624 -14.30883 -14.25753 -14.20035 -13.79517 -13.68661 -12.94847 -12.87720 -12.70605 -12.64803 -12.51857 -12.29074 -12.20124 -11.98399 -11.93483 -11.73003 -11.60314 -11.50378 -11.44591 -11.29357 -10.96326 -10.89256 -10.87451 -9.88922 -9.68555 -9.10285 -8.79681 -8.00554 -6.39437 0.70229 0.97973 1.30489 1.38675 1.52106 1.54294 2.27015 2.54354 2.84009 3.05048 3.33664 3.49991 3.61676 3.64497 3.86774 4.05733 4.09331 4.16877 4.28269 4.37359 4.47411 4.51573 4.62985 4.64874 4.71372 4.74204 4.81302 4.86443 4.87579 4.99483 5.01569 5.07482 5.07664 5.23429 5.25710 5.32507 5.40833 5.47793 5.62744 5.80246 5.87403 5.96192 6.11472 6.33042 6.43909 6.83196 6.88490 7.08721 7.18472 8.01640 8.39296 8.59605 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.003240 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.299064 B = 8640.115784 C = 9785.890578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.687 5.687 2 C 0.008 3.992 3 Si 0.972 3.028 4 H -0.249 1.249 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.465 4.465 8 H 0.088 0.912 9 C 0.237 3.763 10 C -0.327 4.327 11 C -0.033 4.033 12 C -0.339 4.339 13 C 0.366 3.634 14 N -0.648 5.648 15 C 0.672 3.328 16 O -0.504 6.504 17 N -0.607 5.607 18 O -0.143 6.143 19 C 0.060 3.940 20 H 0.111 0.889 21 C 0.054 3.946 22 O -0.586 6.586 23 C -0.075 4.075 24 C -0.103 4.103 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.125 4.125 28 N -0.512 5.512 29 H 0.266 0.734 30 H 0.106 0.894 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.421 0.579 34 H 0.412 0.588 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.393 0.607 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.043 0.957 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.953 -5.039 -1.668 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.306 5.306 2 C -0.217 4.217 3 Si 0.793 3.207 4 H -0.172 1.172 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.496 4.496 8 H 0.106 0.894 9 C 0.111 3.889 10 C -0.351 4.351 11 C -0.057 4.057 12 C -0.365 4.365 13 C 0.126 3.874 14 N -0.303 5.303 15 C 0.370 3.630 16 O -0.369 6.369 17 N -0.317 5.317 18 O -0.146 6.146 19 C 0.002 3.998 20 H 0.129 0.871 21 C -0.024 4.024 22 O -0.394 6.394 23 C -0.095 4.095 24 C -0.141 4.141 25 C -0.158 4.158 26 C -0.159 4.159 27 C -0.163 4.163 28 N -0.231 5.231 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.259 0.741 34 H 0.255 0.745 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.242 0.758 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.062 0.938 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.648 -2.718 -2.255 21.934 hybrid contribution 0.147 -0.851 0.670 1.093 sum -21.501 -3.569 -1.584 21.853 Atomic orbital electron populations 1.70561 1.07242 1.27697 1.25104 1.27077 0.95917 1.04116 0.94594 0.85321 0.79814 0.77357 0.78222 1.17193 1.19902 1.19778 1.19930 0.94453 0.90395 1.44831 0.89438 1.18877 0.87755 0.93533 0.88715 1.21811 0.99271 0.93751 1.20220 1.21049 0.93449 0.97359 0.93841 1.20899 0.95097 0.95322 1.25134 1.18757 0.83556 0.91209 0.93832 1.42055 1.03893 1.07997 1.76311 1.16131 0.80699 0.85493 0.80667 1.91400 1.63257 1.31773 1.50499 1.46044 1.02859 0.99836 1.82964 1.90745 1.19647 1.07988 1.96250 1.23207 0.79495 1.01172 0.95970 0.87100 1.22839 1.00530 0.86664 0.92319 1.86560 1.82928 1.37235 1.32661 1.21689 0.96717 0.96334 0.94752 1.22369 0.91403 1.02415 0.97901 1.22495 0.98091 1.00571 0.94623 1.22378 0.94108 1.01969 0.97409 1.22178 0.98318 1.00917 0.94862 1.68602 1.07506 1.25643 1.21353 0.92324 0.87632 0.84122 0.84470 0.74106 0.74538 0.93300 0.89165 0.75794 0.91995 0.89476 0.90498 0.91775 0.89325 0.91657 0.90620 0.93779 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -42.79 8.99 21.84 0.20 -42.59 16 2 C 0.01 0.48 5.50 85.29 0.47 0.95 16 3 Si 0.97 43.32 29.56 68.60 2.03 45.35 16 4 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.47 -27.53 9.14 23.46 0.21 -27.32 16 8 H 0.09 4.82 7.85 -2.91 -0.02 4.80 16 9 C 0.24 14.11 6.55 40.20 0.26 14.38 16 10 C -0.33 -16.76 9.83 22.86 0.22 -16.53 16 11 C -0.03 -1.42 10.15 22.40 0.23 -1.19 16 12 C -0.34 -14.32 9.95 22.72 0.23 -14.09 16 13 C 0.37 18.09 7.43 133.24 0.99 19.08 16 14 N -0.65 -25.65 5.39 -322.14 -1.74 -27.39 16 15 C 0.67 30.03 8.67 179.06 1.55 31.58 16 16 O -0.50 -29.53 12.51 13.40 0.17 -29.36 16 17 N -0.61 -19.83 6.38 -184.76 -1.18 -21.01 16 18 O -0.14 -5.07 10.15 -16.47 -0.17 -5.24 16 19 C 0.06 1.34 1.87 30.60 0.06 1.40 16 20 H 0.11 1.82 7.92 -2.39 -0.02 1.80 16 21 C 0.05 0.99 6.63 71.98 0.48 1.47 16 22 O -0.59 -13.70 12.74 -144.34 -1.84 -15.54 16 23 C -0.07 -1.68 2.53 -10.07 -0.03 -1.70 16 24 C -0.10 -1.44 5.41 31.67 0.17 -1.26 16 25 C -0.12 -1.62 6.91 31.89 0.22 -1.40 16 26 C -0.12 -2.08 6.83 31.67 0.22 -1.86 16 27 C -0.12 -3.08 6.22 31.32 0.19 -2.88 16 28 N -0.51 -30.67 5.74 -186.38 -1.07 -31.74 16 29 H 0.27 15.99 8.29 -92.71 -0.77 15.22 16 30 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 31 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 32 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 33 H 0.42 11.48 8.71 -92.71 -0.81 10.67 16 34 H 0.41 8.84 8.45 -92.71 -0.78 8.05 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 0.97 7.44 -2.39 -0.02 0.95 16 37 H 0.39 5.41 9.12 -74.06 -0.68 4.73 16 38 H 0.06 1.76 7.54 -2.39 -0.02 1.74 16 39 H 0.09 0.85 7.74 -2.39 -0.02 0.83 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 45 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.05 1.40 7.42 -2.39 -0.02 1.38 16 Total: -1.00 -88.27 378.04 0.65 -87.63 By element: Atomic # 1 Polarization: 40.52 SS G_CDS: -1.23 Total: 39.29 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 5.48 Total: 0.61 kcal Atomic # 7 Polarization: -118.94 SS G_CDS: -3.79 Total: -122.73 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -1.84 Total: -50.14 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -88.27 0.65 -87.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563221893.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.750 kcal (2) G-P(sol) polarization free energy of solvation -88.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds