Wall clock time and date at job start Tue Mar 31 2020 18:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48505 * 109.47254 * 270.00014 * 3 2 1 5 5 H 1.48499 * 109.47262 * 29.99917 * 3 2 1 6 6 H 1.48504 * 109.47599 * 149.99962 * 3 2 1 7 7 C 1.38956 * 120.00587 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99447 * 359.97438 * 7 2 1 9 9 N 1.37094 * 120.00441 * 180.02562 * 7 2 1 10 10 C 1.34772 * 119.99957 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00082 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99766 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46979 * 180.02562 * 12 10 9 14 14 C 1.46894 * 111.00108 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47245 * 175.74865 * 14 13 12 16 16 N 1.46501 * 110.43511 * 305.62401 * 15 14 13 17 17 C 1.34773 * 119.99990 * 300.45290 * 16 15 14 18 18 O 1.21700 * 120.00301 * 355.24651 * 17 16 15 19 19 C 1.46656 * 120.00210 * 175.25382 * 17 16 15 20 20 C 1.36541 * 125.99000 * 180.02562 * 19 17 16 21 21 C 1.40361 * 106.70872 * 179.97438 * 20 19 17 22 22 C 1.35137 * 107.11659 * 359.97438 * 21 20 19 23 23 O 1.33933 * 108.76089 * 359.77096 * 22 21 20 24 24 C 1.54890 * 110.48716 * 68.16569 * 15 14 13 25 25 C 1.55239 * 102.58740 * 156.67323 * 24 15 14 26 26 C 1.54262 * 104.23502 * 322.08571 * 25 24 15 27 27 C 1.53879 * 106.59837 * 23.60826 * 26 25 24 28 28 H 0.97004 * 120.00123 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99700 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.47358 * 59.99519 * 12 10 9 31 31 H 1.09004 * 109.46749 * 299.99375 * 12 10 9 32 32 H 1.00899 * 110.99797 * 303.94609 * 13 12 10 33 33 H 1.09002 * 109.47307 * 55.74782 * 14 13 12 34 34 H 1.08997 * 109.47622 * 295.75118 * 14 13 12 35 35 H 0.96995 * 119.99875 * 120.72858 * 16 15 14 36 36 H 1.08000 * 126.64813 * 359.97438 * 20 19 17 37 37 H 1.07999 * 126.44475 * 179.97438 * 21 20 19 38 38 H 1.07994 * 125.61836 * 180.02562 * 22 21 20 39 39 H 1.08996 * 110.75210 * 275.07027 * 24 15 14 40 40 H 1.09004 * 110.75133 * 38.43737 * 24 15 14 41 41 H 1.09003 * 110.46837 * 203.39262 * 25 24 15 42 42 H 1.09000 * 110.46562 * 80.77649 * 25 24 15 43 43 H 1.08996 * 110.03234 * 264.32266 * 26 25 24 44 44 H 1.09001 * 110.03058 * 142.89268 * 26 25 24 45 45 H 1.08994 * 110.03153 * 240.71444 * 27 26 25 46 46 H 1.09000 * 110.02937 * 119.28275 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3799 -1.2033 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4208 0.0011 12 6 5.5608 -2.3703 0.0022 13 7 6.0505 -3.7553 0.0014 14 6 7.5189 -3.7945 0.0019 15 6 7.9904 -5.2462 0.1079 16 7 7.3891 -5.8953 1.2755 17 6 7.6066 -5.3983 2.5093 18 8 8.3709 -4.4638 2.6629 19 6 6.9223 -5.9837 3.6668 20 6 7.0510 -5.5786 4.9643 21 6 6.2213 -6.4114 5.7313 22 6 5.6294 -7.2771 4.8789 23 8 6.0503 -7.0127 3.6352 24 6 7.6419 -6.0251 -1.1847 25 6 8.6698 -7.1883 -1.1663 26 6 9.9616 -6.5443 -0.6222 27 6 9.5297 -5.3094 0.1880 28 1 -0.4850 0.8401 -0.0004 29 1 3.8648 -0.3632 0.0007 30 1 5.9234 -1.8569 0.8926 31 1 5.9247 -1.8562 -0.8873 32 1 5.6745 -4.2723 0.7821 33 1 7.8973 -3.2266 0.8519 34 1 7.8944 -3.3572 -0.9232 35 1 6.8378 -6.6851 1.1611 36 1 7.6711 -4.7734 5.3298 37 1 6.0820 -6.3684 6.8014 38 1 4.9291 -8.0515 5.1546 39 1 6.6218 -6.4069 -1.1424 40 1 7.7844 -5.3973 -2.0643 41 1 8.8297 -7.5716 -2.1741 42 1 8.3321 -7.9849 -0.5034 43 1 10.6050 -6.2424 -1.4486 44 1 10.4871 -7.2488 0.0225 45 1 9.9635 -4.4083 -0.2453 46 1 9.8456 -5.4147 1.2259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567992360.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:53 Heat of formation + Delta-G solvation = -52.067473 kcal Electronic energy + Delta-G solvation = -29382.283301 eV Core-core repulsion = 25273.571752 eV Total energy + Delta-G solvation = -4108.711549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.84765 -40.53153 -38.39694 -37.87646 -35.11503 -33.91592 -33.67275 -33.11120 -31.63283 -30.48689 -29.18527 -28.92777 -26.70425 -24.35790 -23.74830 -22.71902 -21.97342 -20.88275 -20.58220 -19.64579 -19.24245 -18.69228 -18.28451 -16.65671 -16.49084 -16.43338 -15.98349 -15.54684 -15.15415 -14.97265 -14.75338 -14.51424 -14.38262 -13.90815 -13.60242 -13.35663 -13.24024 -13.18411 -13.14185 -12.87128 -12.62998 -12.17991 -11.89825 -11.74664 -11.68921 -11.47808 -11.40072 -11.20249 -11.15311 -10.92353 -10.64960 -10.56688 -10.25608 -10.17579 -9.95193 -9.54135 -9.33220 -8.85579 -8.51072 -8.15669 -8.04483 -6.28658 -3.79710 0.88628 2.16419 2.48976 3.00943 3.05499 3.05754 3.09585 3.17253 3.78486 4.04493 4.13093 4.38323 4.44167 4.54479 4.68193 4.70264 4.82723 4.95372 5.06004 5.23779 5.29399 5.31793 5.40236 5.43123 5.48829 5.56304 5.59834 5.66742 5.69055 5.73298 5.75478 5.81229 5.88906 5.91715 5.94922 5.99322 6.10180 6.11629 6.19516 6.42146 6.63834 7.13871 7.32202 7.60868 7.62892 7.92647 8.17345 8.63047 8.97746 9.45601 9.86461 10.84550 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010401 B = 0.003296 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.442130 B = 8492.454805 C =10098.196930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.119 0.881 9 N -0.591 5.591 10 C 0.452 3.548 11 O -0.565 6.565 12 C 0.047 3.953 13 N -0.663 5.663 14 C 0.049 3.951 15 C 0.177 3.823 16 N -0.703 5.703 17 C 0.604 3.396 18 O -0.518 6.518 19 C -0.081 4.081 20 C -0.120 4.120 21 C -0.227 4.227 22 C -0.003 4.003 23 O -0.162 6.162 24 C -0.112 4.112 25 C -0.128 4.128 26 C -0.123 4.123 27 C -0.126 4.126 28 H 0.273 0.727 29 H 0.370 0.630 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.347 0.653 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.407 0.593 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.211 0.789 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.192 -13.952 5.114 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.238 3.762 11 O -0.447 6.447 12 C -0.086 4.086 13 N -0.295 5.295 14 C -0.082 4.082 15 C 0.091 3.909 16 N -0.355 5.355 17 C 0.390 3.610 18 O -0.395 6.395 19 C -0.133 4.133 20 C -0.141 4.141 21 C -0.246 4.246 22 C -0.073 4.073 23 O -0.057 6.057 24 C -0.150 4.150 25 C -0.166 4.166 26 C -0.161 4.161 27 C -0.165 4.165 28 H 0.083 0.917 29 H 0.203 0.797 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.166 0.834 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.243 0.757 36 H 0.177 0.823 37 H 0.174 0.826 38 H 0.227 0.773 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 19.975 -14.070 4.225 24.796 hybrid contribution 0.364 1.429 1.243 1.928 sum 20.340 -12.641 5.468 24.564 Atomic orbital electron populations 1.69620 1.05632 1.27449 1.49567 1.25028 0.95487 0.97951 0.97683 0.86677 0.79800 0.84047 0.78914 1.19580 1.20197 1.19511 1.19428 0.79272 0.96604 1.47970 0.86326 1.42203 1.07513 1.06174 1.67196 1.19714 0.88207 0.84541 0.83785 1.90548 1.69473 1.30947 1.53704 1.21711 0.94933 0.90668 1.01269 1.60118 1.05745 1.12443 1.51234 1.22379 0.88994 0.94922 1.01860 1.21259 0.92453 0.92335 0.84850 1.45947 1.52202 1.32025 1.05277 1.16567 0.80742 0.82471 0.81182 1.90861 1.35909 1.28001 1.84767 1.22123 0.99948 0.94755 0.96458 1.21970 1.00241 1.00683 0.91216 1.21868 1.02232 0.98993 1.01510 1.24439 1.00735 1.01519 0.80657 1.84074 1.47711 1.42565 1.31303 1.22744 0.99818 0.96466 0.95959 1.22496 0.95219 0.97841 1.01048 1.22132 0.97640 0.96990 0.99307 1.22491 0.93825 0.98569 1.01645 0.91654 0.79694 0.93877 0.89446 0.83363 0.93333 0.90054 0.75728 0.82347 0.82607 0.77295 0.89909 0.89433 0.91376 0.91802 0.91727 0.92134 0.90706 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.13 13.96 55.50 0.77 -25.35 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 3 Si 0.88 19.81 27.74 -169.99 -4.71 15.10 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.60 6.52 56.52 0.37 -5.23 16 7 C -0.30 -8.78 10.16 -14.93 -0.15 -8.94 16 8 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 9 N -0.59 -14.55 5.09 -10.96 -0.06 -14.61 16 10 C 0.45 10.65 7.82 -10.99 -0.09 10.57 16 11 O -0.56 -15.50 15.78 5.55 0.09 -15.41 16 12 C 0.05 0.84 6.16 -4.97 -0.03 0.81 16 13 N -0.66 -10.85 6.00 -115.06 -0.69 -11.54 16 14 C 0.05 0.64 4.29 -3.83 -0.02 0.63 16 15 C 0.18 1.94 0.52 -130.16 -0.07 1.88 16 16 N -0.70 -7.98 4.18 -47.36 -0.20 -8.18 16 17 C 0.60 8.00 6.89 -12.86 -0.09 7.92 16 18 O -0.52 -7.95 13.75 5.19 0.07 -7.88 16 19 C -0.08 -1.01 7.13 -36.80 -0.26 -1.27 16 20 C -0.12 -1.39 10.62 -39.40 -0.42 -1.81 16 21 C -0.23 -2.11 10.87 -39.89 -0.43 -2.54 16 22 C 0.00 -0.03 12.08 29.63 0.36 0.33 16 23 O -0.16 -1.82 10.41 5.00 0.05 -1.77 16 24 C -0.11 -1.09 5.73 -24.55 -0.14 -1.23 16 25 C -0.13 -1.02 6.80 -24.88 -0.17 -1.19 16 26 C -0.12 -1.00 6.80 -25.61 -0.17 -1.17 16 27 C -0.13 -1.27 5.66 -25.61 -0.14 -1.41 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 29 H 0.37 8.06 5.76 -40.82 -0.24 7.83 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.35 6.17 7.37 -39.29 -0.29 5.88 16 33 H 0.05 0.71 6.54 -51.93 -0.34 0.37 16 34 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 35 H 0.41 4.12 8.25 -40.82 -0.34 3.79 16 36 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.21 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.09 0.85 8.00 -51.93 -0.42 0.44 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 46 H 0.08 0.90 6.42 -51.93 -0.33 0.57 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -34.72 379.71 -7.43 -42.15 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -6.56 Total: 18.16 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.92 Total: 3.61 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.17 Total: -59.68 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.21 Total: -25.06 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.71 Total: 15.10 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.72 -7.43 -42.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567992360.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.917 kcal (2) G-P(sol) polarization free energy of solvation -34.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds