Wall clock time and date at job start Tue Mar 31 2020 18:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48505 * 109.47254 * 270.00014 * 3 2 1 5 5 H 1.48499 * 109.47262 * 29.99917 * 3 2 1 6 6 H 1.48504 * 109.47599 * 149.99962 * 3 2 1 7 7 C 1.38956 * 120.00587 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99447 * 359.97438 * 7 2 1 9 9 N 1.37094 * 120.00441 * 180.02562 * 7 2 1 10 10 C 1.34772 * 119.99957 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00082 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99766 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46979 * 180.02562 * 12 10 9 14 14 C 1.46894 * 111.00108 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47245 * 175.74865 * 14 13 12 16 16 N 1.46501 * 110.43511 * 305.62401 * 15 14 13 17 17 C 1.34773 * 119.99990 * 300.45290 * 16 15 14 18 18 O 1.21700 * 120.00301 * 355.24651 * 17 16 15 19 19 C 1.46656 * 120.00210 * 175.25382 * 17 16 15 20 20 C 1.36541 * 125.99000 * 180.02562 * 19 17 16 21 21 C 1.40361 * 106.70872 * 179.97438 * 20 19 17 22 22 C 1.35137 * 107.11659 * 359.97438 * 21 20 19 23 23 O 1.33933 * 108.76089 * 359.77096 * 22 21 20 24 24 C 1.54890 * 110.48716 * 68.16569 * 15 14 13 25 25 C 1.55239 * 102.58740 * 156.67323 * 24 15 14 26 26 C 1.54262 * 104.23502 * 322.08571 * 25 24 15 27 27 C 1.53879 * 106.59837 * 23.60826 * 26 25 24 28 28 H 0.97004 * 120.00123 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99700 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.47358 * 59.99519 * 12 10 9 31 31 H 1.09004 * 109.46749 * 299.99375 * 12 10 9 32 32 H 1.00899 * 110.99797 * 303.94609 * 13 12 10 33 33 H 1.09002 * 109.47307 * 55.74782 * 14 13 12 34 34 H 1.08997 * 109.47622 * 295.75118 * 14 13 12 35 35 H 0.96995 * 119.99875 * 120.72858 * 16 15 14 36 36 H 1.08000 * 126.64813 * 359.97438 * 20 19 17 37 37 H 1.07999 * 126.44475 * 179.97438 * 21 20 19 38 38 H 1.07994 * 125.61836 * 180.02562 * 22 21 20 39 39 H 1.08996 * 110.75210 * 275.07027 * 24 15 14 40 40 H 1.09004 * 110.75133 * 38.43737 * 24 15 14 41 41 H 1.09003 * 110.46837 * 203.39262 * 25 24 15 42 42 H 1.09000 * 110.46562 * 80.77649 * 25 24 15 43 43 H 1.08996 * 110.03234 * 264.32266 * 26 25 24 44 44 H 1.09001 * 110.03058 * 142.89268 * 26 25 24 45 45 H 1.08994 * 110.03153 * 240.71444 * 27 26 25 46 46 H 1.09000 * 110.02937 * 119.28275 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3799 -1.2033 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4208 0.0011 12 6 5.5608 -2.3703 0.0022 13 7 6.0505 -3.7553 0.0014 14 6 7.5189 -3.7945 0.0019 15 6 7.9904 -5.2462 0.1079 16 7 7.3891 -5.8953 1.2755 17 6 7.6066 -5.3983 2.5093 18 8 8.3709 -4.4638 2.6629 19 6 6.9223 -5.9837 3.6668 20 6 7.0510 -5.5786 4.9643 21 6 6.2213 -6.4114 5.7313 22 6 5.6294 -7.2771 4.8789 23 8 6.0503 -7.0127 3.6352 24 6 7.6419 -6.0251 -1.1847 25 6 8.6698 -7.1883 -1.1663 26 6 9.9616 -6.5443 -0.6222 27 6 9.5297 -5.3094 0.1880 28 1 -0.4850 0.8401 -0.0004 29 1 3.8648 -0.3632 0.0007 30 1 5.9234 -1.8569 0.8926 31 1 5.9247 -1.8562 -0.8873 32 1 5.6745 -4.2723 0.7821 33 1 7.8973 -3.2266 0.8519 34 1 7.8944 -3.3572 -0.9232 35 1 6.8378 -6.6851 1.1611 36 1 7.6711 -4.7734 5.3298 37 1 6.0820 -6.3684 6.8014 38 1 4.9291 -8.0515 5.1546 39 1 6.6218 -6.4069 -1.1424 40 1 7.7844 -5.3973 -2.0643 41 1 8.8297 -7.5716 -2.1741 42 1 8.3321 -7.9849 -0.5034 43 1 10.6050 -6.2424 -1.4486 44 1 10.4871 -7.2488 0.0225 45 1 9.9635 -4.4083 -0.2453 46 1 9.8456 -5.4147 1.2259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567992360.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:53 Heat of formation + Delta-G solvation = -79.054192 kcal Electronic energy + Delta-G solvation = -29383.453533 eV Core-core repulsion = 25273.571752 eV Total energy + Delta-G solvation = -4109.881781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.65812 -41.47387 -40.27159 -38.83198 -36.49709 -35.78722 -34.66073 -33.96812 -33.76422 -31.41230 -30.20994 -29.69029 -28.17785 -26.01271 -24.67922 -23.93120 -22.75744 -21.71828 -21.36060 -21.34009 -20.58033 -20.11545 -19.54183 -18.00818 -17.46886 -17.29121 -17.09970 -17.03190 -16.65148 -16.14719 -15.89802 -15.57479 -15.43245 -15.17069 -15.15186 -14.90743 -14.47618 -14.15238 -14.05818 -13.98526 -13.96847 -13.59169 -13.27321 -13.08278 -12.89233 -12.56996 -12.44137 -12.40659 -12.13207 -12.00212 -11.95591 -11.79925 -11.53883 -11.33437 -11.14122 -11.06733 -10.53463 -10.27107 -10.21269 -9.65992 -9.36230 -8.43406 -6.04136 0.01135 1.28945 1.33383 1.40181 1.42303 1.66410 1.91360 2.07609 2.18415 2.20847 2.66749 3.12356 3.29095 3.57404 3.67034 3.79106 3.87256 3.93260 4.08914 4.10755 4.25854 4.34170 4.43196 4.52347 4.57228 4.61350 4.63185 4.65407 4.79037 4.82616 4.86864 4.88909 4.93390 5.11820 5.13062 5.25220 5.33870 5.37342 5.48336 5.50657 5.55293 5.82269 5.85632 5.97436 6.23657 6.42096 6.56952 6.84951 6.97671 7.36380 7.91979 8.74121 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010401 B = 0.003296 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.442130 B = 8492.454805 C =10098.196930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.963 3.037 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.237 1.237 7 C -0.329 4.329 8 H 0.057 0.943 9 N -0.590 5.590 10 C 0.450 3.550 11 O -0.610 6.610 12 C 0.059 3.941 13 N -0.669 5.669 14 C 0.052 3.948 15 C 0.174 3.826 16 N -0.696 5.696 17 C 0.601 3.399 18 O -0.547 6.547 19 C -0.113 4.113 20 C -0.130 4.130 21 C -0.236 4.236 22 C 0.006 3.994 23 O -0.172 6.172 24 C -0.109 4.109 25 C -0.122 4.122 26 C -0.118 4.118 27 C -0.122 4.122 28 H 0.280 0.720 29 H 0.389 0.611 30 H 0.061 0.939 31 H 0.119 0.881 32 H 0.336 0.664 33 H 0.035 0.965 34 H 0.100 0.900 35 H 0.412 0.588 36 H 0.158 0.842 37 H 0.182 0.818 38 H 0.252 0.748 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.529 -13.253 4.982 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.211 4.211 3 Si 0.783 3.217 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.459 4.459 8 H 0.075 0.925 9 N -0.232 5.232 10 C 0.238 3.762 11 O -0.495 6.495 12 C -0.073 4.073 13 N -0.301 5.301 14 C -0.077 4.077 15 C 0.088 3.912 16 N -0.347 5.347 17 C 0.388 3.612 18 O -0.427 6.427 19 C -0.165 4.165 20 C -0.150 4.150 21 C -0.254 4.254 22 C -0.064 4.064 23 O -0.067 6.067 24 C -0.147 4.147 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.161 4.161 28 H 0.089 0.911 29 H 0.224 0.776 30 H 0.079 0.921 31 H 0.137 0.863 32 H 0.154 0.846 33 H 0.053 0.947 34 H 0.118 0.882 35 H 0.248 0.752 36 H 0.176 0.824 37 H 0.200 0.800 38 H 0.268 0.732 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 22.339 -13.392 4.076 26.363 hybrid contribution -0.463 1.063 1.343 1.774 sum 21.875 -12.329 5.418 25.688 Atomic orbital electron populations 1.69792 1.08034 1.29276 1.50153 1.26075 0.96461 1.02572 0.96010 0.85391 0.79328 0.76921 0.80057 1.17892 1.19810 1.16012 1.19014 0.81357 0.95018 1.50464 0.92520 1.42027 1.05920 1.07499 1.67720 1.20844 0.90695 0.83434 0.81263 1.90526 1.71236 1.32645 1.55055 1.21653 0.90033 0.92142 1.03521 1.60164 1.07690 1.11451 1.50744 1.22466 0.86708 0.96440 1.02135 1.21358 0.93199 0.91340 0.85267 1.45928 1.51829 1.31913 1.04996 1.16722 0.80470 0.82208 0.81798 1.90825 1.37289 1.29308 1.85298 1.22089 1.01548 0.96208 0.96627 1.22240 1.00432 1.00916 0.91454 1.22223 1.01787 0.98575 1.02857 1.25359 0.99961 1.01513 0.79544 1.84066 1.47659 1.42297 1.32719 1.22719 0.99674 0.97049 0.95231 1.22463 0.94391 0.97096 1.01962 1.22107 0.97850 0.96074 0.99479 1.22439 0.92806 0.99899 1.00925 0.91067 0.77579 0.92136 0.86286 0.84634 0.94673 0.88195 0.75205 0.82396 0.80032 0.73239 0.91182 0.88986 0.89928 0.91666 0.90288 0.91853 0.90129 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.96 21.66 0.30 -56.40 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 3 Si 0.96 39.72 27.74 68.60 1.90 41.63 16 4 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.24 -8.43 6.52 99.48 0.65 -7.78 16 7 C -0.33 -19.71 10.16 84.04 0.85 -18.85 16 8 H 0.06 4.01 7.39 -2.91 -0.02 3.99 16 9 N -0.59 -28.92 5.09 -306.99 -1.56 -30.48 16 10 C 0.45 21.30 7.82 87.66 0.69 21.98 16 11 O -0.61 -34.71 15.78 -3.05 -0.05 -34.76 16 12 C 0.06 2.00 6.16 85.56 0.53 2.53 16 13 N -0.67 -21.43 6.00 -517.94 -3.11 -24.54 16 14 C 0.05 1.31 4.29 86.30 0.37 1.68 16 15 C 0.17 3.70 0.52 4.68 0.00 3.70 16 16 N -0.70 -15.96 4.18 -421.98 -1.76 -17.73 16 17 C 0.60 16.36 6.89 86.44 0.60 16.95 16 18 O -0.55 -17.26 13.75 -4.35 -0.06 -17.32 16 19 C -0.11 -2.90 7.13 24.07 0.17 -2.72 16 20 C -0.13 -3.01 10.62 22.39 0.24 -2.77 16 21 C -0.24 -4.08 10.87 22.07 0.24 -3.84 16 22 C 0.01 0.09 12.08 67.11 0.81 0.90 16 23 O -0.17 -3.84 10.41 -5.03 -0.05 -3.89 16 24 C -0.11 -1.98 5.73 32.01 0.18 -1.80 16 25 C -0.12 -1.70 6.80 31.79 0.22 -1.49 16 26 C -0.12 -1.68 6.80 31.32 0.21 -1.46 16 27 C -0.12 -2.31 5.66 31.32 0.18 -2.13 16 28 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.39 15.99 5.76 -92.71 -0.53 15.45 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.12 3.34 8.14 -2.38 -0.02 3.32 16 32 H 0.34 12.07 7.37 -89.69 -0.66 11.41 16 33 H 0.04 1.00 6.54 -2.39 -0.02 0.99 16 34 H 0.10 2.13 8.06 -2.39 -0.02 2.11 16 35 H 0.41 8.52 8.25 -92.71 -0.76 7.75 16 36 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 37 H 0.18 2.05 8.06 -2.91 -0.02 2.02 16 38 H 0.25 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.07 1.47 8.08 -2.39 -0.02 1.45 16 40 H 0.09 1.61 8.00 -2.38 -0.02 1.59 16 41 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 1.42 7.84 -2.39 -0.02 1.40 16 46 H 0.06 1.35 6.42 -2.39 -0.02 1.34 16 Total: -1.00 -80.75 379.71 0.38 -80.37 By element: Atomic # 1 Polarization: 51.65 SS G_CDS: -0.98 Total: 50.66 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 5.75 Total: 12.46 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -6.13 Total: -129.14 kcal Atomic # 8 Polarization: -55.82 SS G_CDS: -0.16 Total: -55.98 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 1.90 Total: 41.63 kcal Total: -80.75 0.38 -80.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567992360.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.315 kcal (2) G-P(sol) polarization free energy of solvation -80.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds