Wall clock time and date at job start Tue Mar 31 2020 19:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00504 * 2 1 4 4 H 1.48499 * 109.47164 * 272.94597 * 3 2 1 5 5 H 1.48501 * 109.46848 * 32.94376 * 3 2 1 6 6 H 1.48496 * 109.47154 * 152.94228 * 3 2 1 7 7 C 1.38816 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00169 * 339.33853 * 7 2 1 9 9 N 1.36942 * 120.00063 * 159.34530 * 7 2 1 10 10 C 1.46919 * 120.62752 * 332.62800 * 9 7 2 11 11 C 1.53196 * 108.77574 * 233.58498 * 10 9 7 12 12 C 1.53039 * 109.31046 * 305.36858 * 11 10 9 13 13 C 1.52996 * 109.46066 * 181.38378 * 12 11 10 14 14 C 1.53004 * 109.47531 * 174.97274 * 13 12 11 15 15 N 1.46498 * 109.47280 * 179.97438 * 14 13 12 16 16 C 1.34775 * 119.99798 * 179.97438 * 15 14 13 17 17 O 1.21609 * 120.00331 * 359.97438 * 16 15 14 18 18 C 1.47293 * 119.99927 * 179.97438 * 16 15 14 19 19 C 1.36573 * 125.80741 * 179.97438 * 18 16 15 20 20 C 1.40058 * 106.92645 * 180.02562 * 19 18 16 21 21 C 1.36569 * 106.92633 * 359.97438 * 20 19 18 22 22 C 1.47294 * 125.80442 * 179.97438 * 21 20 19 23 23 N 1.34777 * 120.00009 * 180.02562 * 22 21 20 24 24 O 1.21605 * 120.00116 * 0.02562 * 22 21 20 25 25 O 1.34544 * 108.39121 * 0.24900 * 21 20 19 26 26 C 1.53038 * 109.53007 * 61.37091 * 12 11 10 27 27 C 1.46921 * 120.62978 * 152.59820 * 9 7 2 28 28 H 0.97002 * 119.99270 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58965 * 113.80148 * 10 9 7 30 30 H 1.08999 * 109.70726 * 353.44421 * 10 9 7 31 31 H 1.08994 * 109.49826 * 185.41374 * 11 10 9 32 32 H 1.09000 * 109.49364 * 65.31705 * 11 10 9 33 33 H 1.09003 * 109.45892 * 301.35419 * 12 11 10 34 34 H 1.09001 * 109.47488 * 54.96809 * 13 12 11 35 35 H 1.09001 * 109.47273 * 294.97372 * 13 12 11 36 36 H 1.08993 * 109.46965 * 59.99607 * 14 13 12 37 37 H 1.09007 * 109.46546 * 299.99730 * 14 13 12 38 38 H 0.97003 * 119.99850 * 0.02562 * 15 14 13 39 39 H 1.07995 * 126.53478 * 359.97419 * 19 18 16 40 40 H 1.07997 * 126.53564 * 180.02562 * 20 19 18 41 41 H 0.97008 * 119.99817 * 359.97438 * 23 22 21 42 42 H 0.97000 * 120.00428 * 179.72173 * 23 22 21 43 43 H 1.08996 * 109.50216 * 58.57598 * 26 12 11 44 44 H 1.09000 * 109.50185 * 178.68161 * 26 12 11 45 45 H 1.08994 * 109.59390 * 246.20237 * 27 9 7 46 46 H 1.09003 * 109.58835 * 6.49191 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4356 2.0823 -1.3982 5 1 1.4804 2.6338 0.7614 6 1 3.5776 1.4228 0.6369 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1076 0.3291 9 7 3.3136 -1.2403 -0.4189 10 6 3.8173 -0.2586 -1.3890 11 6 4.4622 -1.0080 -2.5592 12 6 5.5288 -1.9645 -2.0214 13 6 6.1991 -2.6897 -3.1900 14 6 7.3487 -3.5514 -2.6638 15 7 7.9902 -4.2461 -3.7827 16 6 9.0350 -5.0668 -3.5565 17 8 9.4457 -5.2303 -2.4235 18 6 9.6795 -5.7658 -4.6814 19 6 10.7412 -6.6199 -4.5886 20 6 11.0301 -7.0540 -5.8885 21 6 10.1322 -6.4468 -6.7193 22 6 10.0626 -6.6119 -8.1813 23 7 9.1246 -5.9528 -8.8900 24 8 10.8514 -7.3429 -8.7489 25 8 9.3258 -5.6675 -5.9759 26 6 4.8748 -2.9902 -1.0927 27 6 4.2350 -2.2631 0.0944 28 1 -0.4849 0.8401 0.0004 29 1 4.5598 0.3801 -0.9106 30 1 2.9923 0.3519 -1.7562 31 1 4.9247 -0.2923 -3.2389 32 1 3.6995 -1.5759 -3.0920 33 1 6.2779 -1.3987 -1.4674 34 1 6.5884 -1.9571 -3.8971 35 1 5.4685 -3.3250 -3.6906 36 1 6.9595 -4.2839 -1.9568 37 1 8.0795 -2.9159 -2.1633 38 1 7.6633 -4.1149 -4.6866 39 1 11.2596 -6.9054 -3.6853 40 1 11.8131 -7.7390 -6.1785 41 1 8.4951 -5.3700 -8.4372 42 1 9.0813 -6.0584 -9.8533 43 1 4.1082 -3.5393 -1.6394 44 1 5.6311 -3.6855 -0.7284 45 1 5.0114 -1.7880 0.6938 46 1 3.6843 -2.9760 0.7083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568127337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:15 Heat of formation + Delta-G solvation = -45.317879 kcal Electronic energy + Delta-G solvation = -27893.897382 eV Core-core repulsion = 23785.478518 eV Total energy + Delta-G solvation = -4108.418865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.38217 -40.06062 -39.65627 -38.33353 -35.82636 -34.53959 -33.89535 -33.49060 -31.67443 -30.86886 -30.40207 -28.98725 -25.90612 -24.59668 -23.38881 -22.73589 -22.08027 -21.61200 -21.13957 -20.64876 -19.44642 -19.19383 -18.18929 -17.46571 -17.20955 -16.88548 -16.28160 -15.76991 -15.30104 -15.24609 -15.03412 -14.68404 -14.38625 -14.11947 -13.80331 -13.76690 -13.68839 -13.64026 -13.36672 -13.17771 -12.84972 -12.37114 -11.92972 -11.76065 -11.55050 -11.28337 -11.17481 -10.81439 -10.74166 -10.70042 -10.55726 -10.45163 -10.44355 -10.11605 -9.82152 -9.66583 -9.57989 -9.40420 -9.26071 -8.61556 -6.96699 -5.95328 -3.30433 0.06818 1.36725 1.75753 2.51409 2.59961 2.67577 2.89580 3.30294 3.47553 3.50620 4.03750 4.25320 4.38006 4.52470 4.68308 4.84701 4.92264 4.96361 4.98381 5.07498 5.25526 5.31851 5.34202 5.50138 5.54413 5.63283 5.76925 5.79523 5.85412 5.90932 5.93567 6.05253 6.08725 6.12593 6.21606 6.37100 6.42387 6.53615 6.59102 6.64869 6.66899 6.71007 6.97818 6.99556 7.43902 7.60629 7.97051 8.32836 8.94970 9.72443 10.10924 11.20823 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.001877 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.994935 B =14916.174680 C =15542.998174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.021 3.979 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.258 4.258 8 H 0.085 0.915 9 N -0.606 5.606 10 C 0.125 3.875 11 C -0.127 4.127 12 C -0.076 4.076 13 C -0.126 4.126 14 C 0.114 3.886 15 N -0.714 5.714 16 C 0.598 3.402 17 O -0.509 6.509 18 C -0.035 4.035 19 C -0.135 4.135 20 C -0.125 4.125 21 C -0.055 4.055 22 C 0.610 3.390 23 N -0.840 5.840 24 O -0.516 6.516 25 O -0.154 6.154 26 C -0.132 4.132 27 C 0.147 3.853 28 H 0.262 0.738 29 H 0.023 0.977 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.405 0.595 39 H 0.171 0.829 40 H 0.170 0.830 41 H 0.409 0.591 42 H 0.412 0.588 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.021 0.979 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.618 -10.950 -16.175 28.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.714 3.286 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.386 4.386 8 H 0.102 0.898 9 N -0.330 5.330 10 C 0.000 4.000 11 C -0.167 4.167 12 C -0.095 4.095 13 C -0.164 4.164 14 C -0.008 4.008 15 N -0.364 5.364 16 C 0.382 3.618 17 O -0.386 6.386 18 C -0.089 4.089 19 C -0.155 4.155 20 C -0.146 4.146 21 C -0.109 4.109 22 C 0.394 3.606 23 N -0.404 5.404 24 O -0.393 6.393 25 O -0.050 6.050 26 C -0.171 4.171 27 C 0.021 3.979 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.240 0.760 39 H 0.189 0.811 40 H 0.188 0.812 41 H 0.238 0.762 42 H 0.244 0.756 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.039 0.961 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 21.045 -11.280 -15.626 28.536 hybrid contribution -0.008 1.270 -0.609 1.409 sum 21.037 -10.009 -16.235 28.396 Atomic orbital electron populations 1.69844 1.05724 1.26491 1.53205 1.25293 0.95241 0.97587 0.99633 0.86936 0.80023 0.84687 0.76915 1.21717 1.23213 1.19625 1.18934 0.85040 0.94706 1.39943 0.89766 1.44357 1.08617 1.33409 1.46646 1.21315 0.97159 0.92039 0.89519 1.22047 0.97647 0.98186 0.98782 1.20972 0.97029 0.96559 0.94935 1.21904 0.96450 0.98712 0.99319 1.21686 0.94945 0.95890 0.88277 1.46002 1.32427 1.45756 1.12259 1.16652 0.80242 0.79134 0.85778 1.90913 1.63713 1.63505 1.20447 1.22564 1.00375 1.04173 0.81768 1.22031 0.96775 0.97511 0.99181 1.22027 1.00073 1.01092 0.91393 1.22291 0.96372 0.99821 0.92378 1.16608 0.81068 0.79899 0.83017 1.43699 1.35084 1.49284 1.12287 1.90939 1.41179 1.38271 1.68900 1.84014 1.49521 1.54238 1.17253 1.22135 0.99306 0.97367 0.98334 1.20925 0.92380 0.91331 0.93231 0.92821 0.95904 0.91051 0.92941 0.91682 0.91437 0.91488 0.91130 0.90262 0.90861 0.76011 0.81118 0.81210 0.76170 0.75563 0.91875 0.92579 0.96085 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.75 13.97 55.49 0.78 -26.97 16 2 C 0.02 0.61 5.23 -17.43 -0.09 0.52 16 3 Si 0.88 22.25 24.34 -169.99 -4.14 18.11 16 4 H -0.29 -6.99 6.62 56.52 0.37 -6.61 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16 6 H -0.27 -6.73 6.63 56.52 0.37 -6.35 16 7 C -0.26 -7.14 10.04 -15.06 -0.15 -7.29 16 8 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 9 N -0.61 -14.10 2.77 -172.32 -0.48 -14.57 16 10 C 0.13 2.64 4.20 -3.71 -0.02 2.62 16 11 C -0.13 -2.05 5.36 -26.61 -0.14 -2.19 16 12 C -0.08 -1.02 2.15 -90.58 -0.19 -1.21 16 13 C -0.13 -1.23 4.80 -26.73 -0.13 -1.36 16 14 C 0.11 1.11 5.43 -4.04 -0.02 1.09 16 15 N -0.71 -6.07 5.55 -61.43 -0.34 -6.41 16 16 C 0.60 6.20 7.81 -12.58 -0.10 6.10 16 17 O -0.51 -6.96 16.86 5.27 0.09 -6.87 16 18 C -0.03 -0.30 7.14 -36.50 -0.26 -0.56 16 19 C -0.13 -1.08 10.60 -39.50 -0.42 -1.50 16 20 C -0.13 -0.94 10.60 -39.50 -0.42 -1.36 16 21 C -0.05 -0.42 7.14 -36.50 -0.26 -0.68 16 22 C 0.61 4.61 8.08 -12.58 -0.10 4.51 16 23 N -0.84 -3.16 8.87 30.40 0.27 -2.89 16 24 O -0.52 -5.61 17.70 5.27 0.09 -5.52 16 25 O -0.15 -1.13 10.14 4.35 0.04 -1.09 16 26 C -0.13 -1.98 5.15 -26.61 -0.14 -2.12 16 27 C 0.15 2.81 6.52 -3.71 -0.02 2.78 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.02 0.48 7.07 -51.93 -0.37 0.11 16 30 H 0.07 1.67 4.50 -51.93 -0.23 1.43 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.86 6.53 -51.93 -0.34 0.52 16 37 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.41 2.47 8.23 -40.82 -0.34 2.13 16 39 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 40 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.41 0.75 8.59 -40.82 -0.35 0.40 16 42 H 0.41 0.92 8.93 -40.82 -0.36 0.56 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.72 6.50 -51.93 -0.34 0.38 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -34.75 376.69 -7.05 -41.80 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.58 Total: -0.60 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -2.46 Total: -0.67 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.23 Total: -50.85 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.23 Total: -13.48 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.75 -7.05 -41.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568127337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.514 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds