Wall clock time and date at job start Tue Mar 31 2020 19:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00504 * 2 1 4 4 H 1.48499 * 109.47164 * 272.94597 * 3 2 1 5 5 H 1.48501 * 109.46848 * 32.94376 * 3 2 1 6 6 H 1.48496 * 109.47154 * 152.94228 * 3 2 1 7 7 C 1.38816 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00169 * 339.33853 * 7 2 1 9 9 N 1.36942 * 120.00063 * 159.34530 * 7 2 1 10 10 C 1.46919 * 120.62752 * 332.62800 * 9 7 2 11 11 C 1.53196 * 108.77574 * 233.58498 * 10 9 7 12 12 C 1.53039 * 109.31046 * 305.36858 * 11 10 9 13 13 C 1.52996 * 109.46066 * 181.38378 * 12 11 10 14 14 C 1.53004 * 109.47531 * 174.97274 * 13 12 11 15 15 N 1.46498 * 109.47280 * 179.97438 * 14 13 12 16 16 C 1.34775 * 119.99798 * 179.97438 * 15 14 13 17 17 O 1.21609 * 120.00331 * 359.97438 * 16 15 14 18 18 C 1.47293 * 119.99927 * 179.97438 * 16 15 14 19 19 C 1.36573 * 125.80741 * 179.97438 * 18 16 15 20 20 C 1.40058 * 106.92645 * 180.02562 * 19 18 16 21 21 C 1.36569 * 106.92633 * 359.97438 * 20 19 18 22 22 C 1.47294 * 125.80442 * 179.97438 * 21 20 19 23 23 N 1.34777 * 120.00009 * 180.02562 * 22 21 20 24 24 O 1.21605 * 120.00116 * 0.02562 * 22 21 20 25 25 O 1.34544 * 108.39121 * 0.24900 * 21 20 19 26 26 C 1.53038 * 109.53007 * 61.37091 * 12 11 10 27 27 C 1.46921 * 120.62978 * 152.59820 * 9 7 2 28 28 H 0.97002 * 119.99270 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58965 * 113.80148 * 10 9 7 30 30 H 1.08999 * 109.70726 * 353.44421 * 10 9 7 31 31 H 1.08994 * 109.49826 * 185.41374 * 11 10 9 32 32 H 1.09000 * 109.49364 * 65.31705 * 11 10 9 33 33 H 1.09003 * 109.45892 * 301.35419 * 12 11 10 34 34 H 1.09001 * 109.47488 * 54.96809 * 13 12 11 35 35 H 1.09001 * 109.47273 * 294.97372 * 13 12 11 36 36 H 1.08993 * 109.46965 * 59.99607 * 14 13 12 37 37 H 1.09007 * 109.46546 * 299.99730 * 14 13 12 38 38 H 0.97003 * 119.99850 * 0.02562 * 15 14 13 39 39 H 1.07995 * 126.53478 * 359.97419 * 19 18 16 40 40 H 1.07997 * 126.53564 * 180.02562 * 20 19 18 41 41 H 0.97008 * 119.99817 * 359.97438 * 23 22 21 42 42 H 0.97000 * 120.00428 * 179.72173 * 23 22 21 43 43 H 1.08996 * 109.50216 * 58.57598 * 26 12 11 44 44 H 1.09000 * 109.50185 * 178.68161 * 26 12 11 45 45 H 1.08994 * 109.59390 * 246.20237 * 27 9 7 46 46 H 1.09003 * 109.58835 * 6.49191 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4356 2.0823 -1.3982 5 1 1.4804 2.6338 0.7614 6 1 3.5776 1.4228 0.6369 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1076 0.3291 9 7 3.3136 -1.2403 -0.4189 10 6 3.8173 -0.2586 -1.3890 11 6 4.4622 -1.0080 -2.5592 12 6 5.5288 -1.9645 -2.0214 13 6 6.1991 -2.6897 -3.1900 14 6 7.3487 -3.5514 -2.6638 15 7 7.9902 -4.2461 -3.7827 16 6 9.0350 -5.0668 -3.5565 17 8 9.4457 -5.2303 -2.4235 18 6 9.6795 -5.7658 -4.6814 19 6 10.7412 -6.6199 -4.5886 20 6 11.0301 -7.0540 -5.8885 21 6 10.1322 -6.4468 -6.7193 22 6 10.0626 -6.6119 -8.1813 23 7 9.1246 -5.9528 -8.8900 24 8 10.8514 -7.3429 -8.7489 25 8 9.3258 -5.6675 -5.9759 26 6 4.8748 -2.9902 -1.0927 27 6 4.2350 -2.2631 0.0944 28 1 -0.4849 0.8401 0.0004 29 1 4.5598 0.3801 -0.9106 30 1 2.9923 0.3519 -1.7562 31 1 4.9247 -0.2923 -3.2389 32 1 3.6995 -1.5759 -3.0920 33 1 6.2779 -1.3987 -1.4674 34 1 6.5884 -1.9571 -3.8971 35 1 5.4685 -3.3250 -3.6906 36 1 6.9595 -4.2839 -1.9568 37 1 8.0795 -2.9159 -2.1633 38 1 7.6633 -4.1149 -4.6866 39 1 11.2596 -6.9054 -3.6853 40 1 11.8131 -7.7390 -6.1785 41 1 8.4951 -5.3700 -8.4372 42 1 9.0813 -6.0584 -9.8533 43 1 4.1082 -3.5393 -1.6394 44 1 5.6311 -3.6855 -0.7284 45 1 5.0114 -1.7880 0.6938 46 1 3.6843 -2.9760 0.7083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568127337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:14 Heat of formation + Delta-G solvation = -73.046116 kcal Electronic energy + Delta-G solvation = -27895.099769 eV Core-core repulsion = 23785.478518 eV Total energy + Delta-G solvation = -4109.621251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.97696 -40.81869 -40.31023 -39.66822 -36.90420 -35.22828 -35.02486 -34.17462 -33.43528 -31.91967 -31.61211 -30.14367 -27.11025 -25.68703 -24.76377 -23.76297 -23.03701 -22.39705 -22.23195 -21.36567 -20.73089 -19.83425 -18.80079 -18.77004 -17.96154 -17.82231 -17.26395 -17.06517 -16.55444 -15.96447 -15.88200 -15.68296 -15.41738 -15.30253 -15.17194 -15.05101 -14.55003 -14.35984 -14.30708 -14.23633 -14.16553 -14.03650 -13.39604 -13.15822 -12.88930 -12.46202 -12.29546 -12.15357 -12.00512 -11.91251 -11.67708 -11.55972 -11.44577 -11.28935 -11.12671 -11.04071 -10.91966 -10.63111 -10.32838 -9.89774 -8.89508 -8.15892 -5.46410 -0.56270 0.74443 1.11117 1.29167 1.41544 1.50702 1.93038 1.93651 1.95630 2.39432 2.42101 3.08002 3.38906 3.47938 3.67606 3.77245 3.85699 3.93006 4.06463 4.25184 4.33368 4.36696 4.37946 4.44312 4.63141 4.63757 4.67723 4.72876 4.78794 4.93963 4.95761 5.03614 5.05892 5.07188 5.24435 5.28484 5.30740 5.33269 5.36611 5.40934 5.66761 5.68986 5.89114 6.13705 6.17439 6.33277 6.90333 6.95079 7.01875 7.65709 8.05920 9.04286 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.001877 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.994935 B =14916.174680 C =15542.998174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.040 4.040 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.313 1.313 6 H -0.263 1.263 7 C -0.247 4.247 8 H 0.048 0.952 9 N -0.622 5.622 10 C 0.116 3.884 11 C -0.119 4.119 12 C -0.072 4.072 13 C -0.111 4.111 14 C 0.118 3.882 15 N -0.701 5.701 16 C 0.599 3.401 17 O -0.548 6.548 18 C -0.047 4.047 19 C -0.133 4.133 20 C -0.130 4.130 21 C -0.055 4.055 22 C 0.610 3.390 23 N -0.818 5.818 24 O -0.555 6.555 25 O -0.144 6.144 26 C -0.122 4.122 27 C 0.139 3.861 28 H 0.261 0.739 29 H 0.030 0.970 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.419 0.581 39 H 0.178 0.822 40 H 0.182 0.818 41 H 0.421 0.579 42 H 0.422 0.578 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.031 0.969 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.029 -10.546 -18.167 31.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.234 4.234 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.242 1.242 6 H -0.188 1.188 7 C -0.376 4.376 8 H 0.066 0.934 9 N -0.347 5.347 10 C -0.009 4.009 11 C -0.158 4.158 12 C -0.091 4.091 13 C -0.149 4.149 14 C -0.004 4.004 15 N -0.351 5.351 16 C 0.385 3.615 17 O -0.428 6.428 18 C -0.101 4.101 19 C -0.153 4.153 20 C -0.151 4.151 21 C -0.109 4.109 22 C 0.394 3.606 23 N -0.382 5.382 24 O -0.435 6.435 25 O -0.039 6.039 26 C -0.161 4.161 27 C 0.014 3.986 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.256 0.744 39 H 0.196 0.804 40 H 0.199 0.801 41 H 0.253 0.747 42 H 0.256 0.744 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.049 0.951 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 23.457 -10.855 -17.674 31.312 hybrid contribution -0.781 1.054 0.006 1.312 sum 22.676 -9.801 -17.667 30.371 Atomic orbital electron populations 1.69979 1.07433 1.27140 1.56004 1.25939 0.95882 1.01049 1.00524 0.85856 0.78541 0.80074 0.77598 1.19831 1.24220 1.18799 1.18880 0.87002 0.93382 1.38378 0.93393 1.44512 1.07650 1.34789 1.47719 1.21423 0.96591 0.92070 0.90797 1.21938 0.98023 0.98816 0.97025 1.20914 0.96355 0.95859 0.95942 1.21718 0.96206 0.98959 0.97977 1.21558 0.94867 0.95603 0.88414 1.45852 1.31639 1.44851 1.12790 1.16751 0.80232 0.78993 0.85553 1.90894 1.64963 1.64926 1.21988 1.22316 1.00943 1.04911 0.81967 1.22224 0.96438 0.96967 0.99721 1.22232 1.00422 1.01272 0.91156 1.22418 0.96279 0.99593 0.92618 1.16613 0.81260 0.79831 0.82917 1.43577 1.33837 1.47973 1.12795 1.90927 1.42896 1.40188 1.69439 1.83990 1.49256 1.54066 1.16612 1.22016 0.99489 0.97738 0.96848 1.21140 0.91848 0.90502 0.95115 0.93040 0.95199 0.93667 0.89792 0.92698 0.90740 0.89184 0.90467 0.91305 0.91098 0.74383 0.80413 0.80111 0.74749 0.74423 0.92915 0.89964 0.95063 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.56 13.97 21.65 0.30 -60.25 16 2 C -0.04 -2.32 5.23 84.86 0.44 -1.88 16 3 Si 0.95 46.56 24.34 68.60 1.67 48.23 16 4 H -0.27 -12.40 6.62 99.48 0.66 -11.74 16 5 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 6 H -0.26 -12.39 6.63 99.48 0.66 -11.73 16 7 C -0.25 -14.04 10.04 84.03 0.84 -13.19 16 8 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 9 N -0.62 -28.71 2.77 -699.09 -1.94 -30.65 16 10 C 0.12 4.66 4.20 86.37 0.36 5.03 16 11 C -0.12 -3.46 5.36 30.67 0.16 -3.29 16 12 C -0.07 -1.67 2.15 -10.77 -0.02 -1.69 16 13 C -0.11 -1.69 4.80 30.59 0.15 -1.54 16 14 C 0.12 1.91 5.43 86.38 0.47 2.37 16 15 N -0.70 -9.78 5.55 -466.51 -2.59 -12.38 16 16 C 0.60 11.25 7.81 86.62 0.68 11.93 16 17 O -0.55 -14.31 16.86 -4.06 -0.07 -14.38 16 18 C -0.05 -0.74 7.14 24.26 0.17 -0.57 16 19 C -0.13 -1.94 10.60 22.32 0.24 -1.71 16 20 C -0.13 -1.76 10.60 22.32 0.24 -1.53 16 21 C -0.05 -0.74 7.14 24.26 0.17 -0.57 16 22 C 0.61 8.14 8.08 86.62 0.70 8.84 16 23 N -0.82 -4.16 8.87 -175.99 -1.56 -5.72 16 24 O -0.55 -11.49 17.70 -4.05 -0.07 -11.56 16 25 O -0.14 -1.76 10.14 -7.33 -0.07 -1.83 16 26 C -0.12 -3.38 5.15 30.68 0.16 -3.23 16 27 C 0.14 5.17 6.52 86.37 0.56 5.73 16 28 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.03 1.17 7.07 -2.39 -0.02 1.15 16 30 H 0.05 2.05 4.50 -2.39 -0.01 2.04 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.29 6.53 -2.39 -0.02 1.27 16 37 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.42 3.54 8.23 -92.71 -0.76 2.78 16 39 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.42 0.28 8.59 -92.70 -0.80 -0.51 16 42 H 0.42 0.89 8.93 -92.71 -0.83 0.06 16 43 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.08 1.88 6.50 -2.39 -0.02 1.86 16 45 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 Total: -1.00 -78.02 376.69 -0.44 -78.46 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -1.44 Total: 5.37 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 5.32 Total: 4.71 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -5.78 Total: -108.99 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.21 Total: -27.78 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.67 Total: 48.23 kcal Total: -78.02 -0.44 -78.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568127337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.415 kcal (2) G-P(sol) polarization free energy of solvation -78.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds