Wall clock time and date at job start Tue Mar 31 2020 18:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99985 * 2 1 4 4 H 1.48499 * 109.46983 * 269.99954 * 3 2 1 5 5 H 1.48500 * 109.47441 * 29.99754 * 3 2 1 6 6 H 1.48496 * 109.47196 * 150.00267 * 3 2 1 7 7 C 1.38947 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99788 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00395 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00436 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99886 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00461 * 179.97438 * 10 9 7 13 13 N 1.46892 * 109.47369 * 179.97438 * 12 10 9 14 14 C 1.46907 * 110.99887 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46990 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.87596 * 65.42697 * 15 14 13 17 17 C 1.54323 * 109.88415 * 186.44934 * 15 14 13 18 18 C 1.55160 * 102.94127 * 141.76289 * 17 15 14 19 19 C 1.54908 * 101.58344 * 324.49914 * 18 17 15 20 20 N 1.47192 * 109.92306 * 304.31229 * 15 14 13 21 21 C 1.34775 * 125.73680 * 61.57695 * 20 15 14 22 22 O 1.21283 * 119.99641 * 359.88379 * 21 20 15 23 23 C 1.50699 * 120.00079 * 179.88358 * 21 20 15 24 24 C 1.50696 * 109.47172 * 179.97438 * 23 21 20 25 25 C 1.34512 * 125.78854 * 89.71906 * 24 23 21 26 26 C 1.41379 * 106.84730 * 179.88787 * 25 24 23 27 27 C 1.34514 * 106.83555 * 0.37277 * 26 25 24 28 28 O 1.34298 * 125.79478 * 270.02449 * 24 23 21 29 29 H 0.97006 * 119.99714 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99546 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.46673 * 59.99665 * 12 10 9 32 32 H 1.09000 * 109.46695 * 300.00184 * 12 10 9 33 33 H 1.00895 * 111.00353 * 56.04447 * 13 12 10 34 34 H 1.08993 * 109.47337 * 59.99996 * 14 13 12 35 35 H 1.08996 * 109.46646 * 299.99419 * 14 13 12 36 36 H 1.09004 * 110.71764 * 23.40196 * 17 15 14 37 37 H 1.09001 * 110.71924 * 260.12967 * 17 15 14 38 38 H 1.08995 * 110.99972 * 206.42545 * 18 17 15 39 39 H 1.09000 * 111.03564 * 82.58736 * 18 17 15 40 40 H 1.09002 * 110.36632 * 155.84970 * 19 18 17 41 41 H 1.08995 * 110.36781 * 278.06207 * 19 18 17 42 42 H 1.09000 * 109.47019 * 300.00562 * 23 21 20 43 43 H 1.09006 * 109.46871 * 59.99615 * 23 21 20 44 44 H 1.08010 * 126.57632 * 0.02623 * 25 24 23 45 45 H 1.07996 * 126.58568 * 180.12104 * 26 25 24 46 46 H 1.07997 * 125.79294 * 179.78905 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2103 -3.5578 0.0022 12 6 1.2438 -4.8629 0.0044 13 7 2.1984 -5.9794 0.0047 14 6 1.4981 -7.2708 0.0057 15 6 2.5230 -8.4068 0.0053 16 1 3.0885 -8.3960 0.9371 17 6 1.8038 -9.7626 -0.1566 18 6 2.7654 -10.5582 -1.0784 19 6 3.3016 -9.4404 -2.0073 20 7 3.4372 -8.2571 -1.1385 21 6 4.2628 -7.2140 -1.3551 22 8 4.2919 -6.2905 -0.5695 23 6 5.1497 -7.1953 -2.5733 24 6 5.9670 -5.9293 -2.5802 25 6 7.1773 -5.7713 -2.0149 26 6 7.5742 -4.4372 -2.2626 27 6 6.5791 -3.8573 -2.9574 28 8 5.6083 -4.7658 -3.1469 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0024 31 1 0.6168 -4.9216 -0.8853 32 1 0.6175 -4.9196 0.8947 33 1 2.8339 -5.9117 0.7854 34 1 0.8728 -7.3458 -0.8839 35 1 0.8737 -7.3447 0.8961 36 1 0.8333 -9.6296 -0.6347 37 1 1.6951 -10.2590 0.8077 38 1 2.2245 -11.3136 -1.6481 39 1 3.5740 -11.0098 -0.5036 40 1 4.2709 -9.7218 -2.4190 41 1 2.5922 -9.2419 -2.8106 42 1 5.8154 -8.0581 -2.5513 43 1 4.5337 -7.2347 -3.4718 44 1 7.7392 -6.5206 -1.4770 45 1 8.4972 -3.9716 -1.9501 46 1 6.5634 -2.8347 -3.3043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568148179.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:50 Heat of formation + Delta-G solvation = -22.845392 kcal Electronic energy + Delta-G solvation = -29843.130051 eV Core-core repulsion = 25735.685666 eV Total energy + Delta-G solvation = -4107.444385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.16352 -40.01984 -37.96166 -37.23058 -35.00682 -33.60956 -32.81480 -32.12246 -31.14886 -31.02812 -30.11435 -26.84484 -26.69767 -24.64068 -23.39670 -22.19510 -21.42268 -21.38145 -20.17320 -19.09696 -18.69004 -17.71555 -17.13302 -16.97597 -16.59172 -15.91592 -15.37928 -15.08450 -14.91828 -14.39778 -14.31682 -14.08338 -14.00171 -13.78475 -13.48905 -13.21070 -13.15946 -12.90124 -12.47165 -12.36591 -12.32717 -12.19265 -11.99839 -11.54845 -11.48833 -11.45672 -11.40890 -11.23429 -11.03394 -10.93195 -10.88530 -10.29437 -10.06829 -9.52348 -9.32774 -9.21790 -8.50046 -8.08428 -8.07498 -7.77041 -7.50462 -6.26268 -3.65469 2.06661 2.89859 3.13035 3.18069 3.26859 3.33683 3.40617 3.46533 4.14910 4.20302 4.33004 4.33520 4.60308 4.69603 4.84846 4.99258 5.06679 5.19661 5.22328 5.27507 5.32573 5.37627 5.39468 5.42587 5.46820 5.49835 5.53366 5.61373 5.64780 5.68709 5.87339 5.99007 6.11475 6.13255 6.20268 6.20818 6.41841 6.48149 6.53844 6.85064 7.52289 7.53212 7.69630 7.79051 8.08102 8.24943 8.73022 8.82050 9.36408 9.74797 10.29771 10.92442 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010520 B = 0.003877 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.966968 B = 7220.910297 C = 9525.620086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.018 3.982 3 Si 0.927 3.073 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.290 4.290 8 H 0.100 0.900 9 N -0.575 5.575 10 C 0.445 3.555 11 O -0.558 6.558 12 C 0.047 3.953 13 N -0.639 5.639 14 C 0.047 3.953 15 C 0.144 3.856 16 H 0.070 0.930 17 C -0.126 4.126 18 C -0.132 4.132 19 C 0.099 3.901 20 N -0.618 5.618 21 C 0.514 3.486 22 O -0.441 6.441 23 C -0.051 4.051 24 C 0.010 3.990 25 C -0.200 4.200 26 C -0.220 4.220 27 C -0.024 4.024 28 O -0.164 6.164 29 H 0.268 0.732 30 H 0.389 0.611 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.358 0.642 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.111 0.889 43 H 0.101 0.899 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.760 -22.724 -5.189 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.182 4.182 3 Si 0.754 3.246 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.420 4.420 8 H 0.118 0.882 9 N -0.213 5.213 10 C 0.230 3.770 11 O -0.439 6.439 12 C -0.086 4.086 13 N -0.276 5.276 14 C -0.084 4.084 15 C 0.040 3.960 16 H 0.088 0.912 17 C -0.165 4.165 18 C -0.170 4.170 19 C -0.024 4.024 20 N -0.358 5.358 21 C 0.299 3.701 22 O -0.308 6.308 23 C -0.091 4.091 24 C -0.041 4.041 25 C -0.220 4.220 26 C -0.239 4.239 27 C -0.093 4.093 28 O -0.059 6.059 29 H 0.078 0.922 30 H 0.222 0.778 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.182 0.818 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.129 0.871 43 H 0.119 0.881 44 H 0.158 0.842 45 H 0.161 0.839 46 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 6.409 -21.858 -5.564 23.448 hybrid contribution -0.603 0.932 0.962 1.469 sum 5.806 -20.927 -4.602 22.199 Atomic orbital electron populations 1.69623 1.05845 1.27725 1.51855 1.25199 0.95596 0.99459 0.97988 0.85904 0.79222 0.81177 0.78249 1.20569 1.21080 1.19548 1.19669 0.93242 0.82387 1.46670 0.88184 1.41865 1.08968 1.04566 1.65946 1.19878 0.88620 0.84628 0.83917 1.90605 1.13267 1.86785 1.53283 1.21698 0.94573 0.92157 1.00138 1.60644 1.16200 0.98385 1.52406 1.22450 0.95355 0.90572 1.00043 1.21533 0.90385 0.93922 0.90147 0.91237 1.22657 0.98867 0.94236 1.00721 1.22749 0.99296 0.97060 0.97878 1.22248 1.00994 0.85477 0.93714 1.48358 1.41794 1.20394 1.25234 1.19830 0.80907 0.81375 0.87949 1.90903 1.62527 1.31908 1.45441 1.19971 0.97592 0.92575 0.98952 1.21368 0.94919 0.86787 1.01027 1.21356 0.97231 0.97907 1.05485 1.21673 1.01710 0.95235 1.05304 1.23939 0.87181 0.94740 1.03402 1.84015 1.41814 1.18890 1.61145 0.92180 0.77787 0.90583 0.94858 0.81808 0.91461 0.95402 0.90351 0.90186 0.90051 0.90686 0.90979 0.91734 0.87128 0.88080 0.84222 0.83932 0.78474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.07 13.05 55.50 0.72 -25.35 16 2 C 0.02 0.51 5.50 -17.47 -0.10 0.41 16 3 Si 0.93 22.23 29.55 -169.99 -5.02 17.21 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.29 -8.62 9.68 -14.94 -0.14 -8.77 16 8 H 0.10 3.14 7.16 -52.48 -0.38 2.76 16 9 N -0.57 -15.77 5.29 -10.96 -0.06 -15.83 16 10 C 0.44 11.59 7.82 -10.99 -0.09 11.51 16 11 O -0.56 -16.64 15.56 5.54 0.09 -16.55 16 12 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 13 N -0.64 -11.90 2.95 -115.06 -0.34 -12.24 16 14 C 0.05 0.63 5.29 -3.82 -0.02 0.61 16 15 C 0.14 1.60 3.30 -66.86 -0.22 1.38 16 16 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 17 C -0.13 -0.90 6.48 -24.89 -0.16 -1.07 16 18 C -0.13 -0.76 7.09 -24.58 -0.17 -0.93 16 19 C 0.10 0.74 6.69 -2.53 -0.02 0.72 16 20 N -0.62 -7.21 3.07 -162.89 -0.50 -7.71 16 21 C 0.51 7.82 7.40 -10.99 -0.08 7.73 16 22 O -0.44 -9.01 11.93 5.56 0.07 -8.94 16 23 C -0.05 -0.63 5.24 -29.04 -0.15 -0.78 16 24 C 0.01 0.16 5.81 -35.63 -0.21 -0.05 16 25 C -0.20 -3.10 10.81 -39.70 -0.43 -3.53 16 26 C -0.22 -3.42 10.91 -39.70 -0.43 -3.85 16 27 C -0.02 -0.40 12.09 29.42 0.36 -0.05 16 28 O -0.16 -3.06 10.65 5.72 0.06 -3.00 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.39 10.26 7.90 -40.82 -0.32 9.93 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.36 7.42 7.03 -39.29 -0.28 7.14 16 34 H 0.07 0.89 8.04 -51.93 -0.42 0.48 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.53 7.78 -51.93 -0.40 0.13 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.41 7.48 -51.93 -0.39 0.02 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.11 0.95 7.85 -51.93 -0.41 0.54 16 43 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 45 H 0.14 1.85 8.06 -52.49 -0.42 1.42 16 46 H 0.20 2.65 8.06 -52.49 -0.42 2.23 16 LS Contribution 382.62 15.07 5.77 5.77 Total: -1.00 -37.76 382.62 -7.92 -45.68 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -6.80 Total: 16.70 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -1.90 Total: 4.27 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.17 Total: -61.13 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: 0.21 Total: -28.49 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.76 -7.92 -45.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568148179.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.833 kcal (2) G-P(sol) polarization free energy of solvation -37.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds