Wall clock time and date at job start Tue Mar 31 2020 18:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99985 * 2 1 4 4 H 1.48499 * 109.46983 * 269.99954 * 3 2 1 5 5 H 1.48500 * 109.47441 * 29.99754 * 3 2 1 6 6 H 1.48496 * 109.47196 * 150.00267 * 3 2 1 7 7 C 1.38947 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99788 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00395 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00436 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99886 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00461 * 179.97438 * 10 9 7 13 13 N 1.46892 * 109.47369 * 179.97438 * 12 10 9 14 14 C 1.46907 * 110.99887 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46990 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.87596 * 65.42697 * 15 14 13 17 17 C 1.54323 * 109.88415 * 186.44934 * 15 14 13 18 18 C 1.55160 * 102.94127 * 141.76289 * 17 15 14 19 19 C 1.54908 * 101.58344 * 324.49914 * 18 17 15 20 20 N 1.47192 * 109.92306 * 304.31229 * 15 14 13 21 21 C 1.34775 * 125.73680 * 61.57695 * 20 15 14 22 22 O 1.21283 * 119.99641 * 359.88379 * 21 20 15 23 23 C 1.50699 * 120.00079 * 179.88358 * 21 20 15 24 24 C 1.50696 * 109.47172 * 179.97438 * 23 21 20 25 25 C 1.34512 * 125.78854 * 89.71906 * 24 23 21 26 26 C 1.41379 * 106.84730 * 179.88787 * 25 24 23 27 27 C 1.34514 * 106.83555 * 0.37277 * 26 25 24 28 28 O 1.34298 * 125.79478 * 270.02449 * 24 23 21 29 29 H 0.97006 * 119.99714 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99546 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.46673 * 59.99665 * 12 10 9 32 32 H 1.09000 * 109.46695 * 300.00184 * 12 10 9 33 33 H 1.00895 * 111.00353 * 56.04447 * 13 12 10 34 34 H 1.08993 * 109.47337 * 59.99996 * 14 13 12 35 35 H 1.08996 * 109.46646 * 299.99419 * 14 13 12 36 36 H 1.09004 * 110.71764 * 23.40196 * 17 15 14 37 37 H 1.09001 * 110.71924 * 260.12967 * 17 15 14 38 38 H 1.08995 * 110.99972 * 206.42545 * 18 17 15 39 39 H 1.09000 * 111.03564 * 82.58736 * 18 17 15 40 40 H 1.09002 * 110.36632 * 155.84970 * 19 18 17 41 41 H 1.08995 * 110.36781 * 278.06207 * 19 18 17 42 42 H 1.09000 * 109.47019 * 300.00562 * 23 21 20 43 43 H 1.09006 * 109.46871 * 59.99615 * 23 21 20 44 44 H 1.08010 * 126.57632 * 0.02623 * 25 24 23 45 45 H 1.07996 * 126.58568 * 180.12104 * 26 25 24 46 46 H 1.07997 * 125.79294 * 179.78905 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2103 -3.5578 0.0022 12 6 1.2438 -4.8629 0.0044 13 7 2.1984 -5.9794 0.0047 14 6 1.4981 -7.2708 0.0057 15 6 2.5230 -8.4068 0.0053 16 1 3.0885 -8.3960 0.9371 17 6 1.8038 -9.7626 -0.1566 18 6 2.7654 -10.5582 -1.0784 19 6 3.3016 -9.4404 -2.0073 20 7 3.4372 -8.2571 -1.1385 21 6 4.2628 -7.2140 -1.3551 22 8 4.2919 -6.2905 -0.5695 23 6 5.1497 -7.1953 -2.5733 24 6 5.9670 -5.9293 -2.5802 25 6 7.1773 -5.7713 -2.0149 26 6 7.5742 -4.4372 -2.2626 27 6 6.5791 -3.8573 -2.9574 28 8 5.6083 -4.7658 -3.1469 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0024 31 1 0.6168 -4.9216 -0.8853 32 1 0.6175 -4.9196 0.8947 33 1 2.8339 -5.9117 0.7854 34 1 0.8728 -7.3458 -0.8839 35 1 0.8737 -7.3447 0.8961 36 1 0.8333 -9.6296 -0.6347 37 1 1.6951 -10.2590 0.8077 38 1 2.2245 -11.3136 -1.6481 39 1 3.5740 -11.0098 -0.5036 40 1 4.2709 -9.7218 -2.4190 41 1 2.5922 -9.2419 -2.8106 42 1 5.8154 -8.0581 -2.5513 43 1 4.5337 -7.2347 -3.4718 44 1 7.7392 -6.5206 -1.4770 45 1 8.4972 -3.9716 -1.9501 46 1 6.5634 -2.8347 -3.3043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568148179.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:49 Heat of formation + Delta-G solvation = -50.115453 kcal Electronic energy + Delta-G solvation = -29844.312569 eV Core-core repulsion = 25735.685666 eV Total energy + Delta-G solvation = -4108.626903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.39695 -40.97985 -39.99338 -38.24538 -36.47757 -35.69264 -34.03332 -33.28138 -33.16108 -32.02071 -31.18073 -28.24533 -27.93065 -26.30490 -24.65298 -23.31436 -22.62408 -22.09783 -21.33072 -20.98138 -19.92741 -19.69893 -18.26078 -18.14335 -17.74295 -17.36824 -16.87806 -16.48910 -16.34811 -16.02289 -15.89821 -15.31014 -15.27856 -14.97295 -14.76920 -14.68248 -14.03644 -13.91021 -13.76636 -13.66960 -13.51188 -13.49952 -13.34346 -13.16472 -12.99790 -12.77797 -12.52030 -12.42916 -12.41044 -12.15137 -11.98265 -11.85582 -11.52066 -11.48582 -10.76169 -10.40853 -10.23455 -9.97987 -9.47036 -9.29183 -8.83333 -8.45988 -5.93999 0.84747 1.35572 1.37085 1.51136 1.73430 2.05414 2.10601 2.14787 2.28551 2.43248 3.01732 3.20673 3.56530 3.65431 3.75973 3.88726 3.98660 4.14910 4.19914 4.21850 4.30230 4.34752 4.38727 4.42740 4.48060 4.50365 4.54433 4.63203 4.70334 4.79493 4.93069 4.95292 5.04416 5.05601 5.18892 5.21794 5.27918 5.39521 5.45358 5.64460 5.70454 5.94467 6.22753 6.29532 6.58578 6.64030 6.84400 7.15449 7.59292 7.66960 8.18425 8.72238 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010520 B = 0.003877 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.966968 B = 7220.910297 C = 9525.620086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.016 4.016 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.267 1.267 6 H -0.275 1.275 7 C -0.329 4.329 8 H 0.072 0.928 9 N -0.581 5.581 10 C 0.437 3.563 11 O -0.600 6.600 12 C 0.062 3.938 13 N -0.650 5.650 14 C 0.046 3.954 15 C 0.139 3.861 16 H 0.054 0.946 17 C -0.117 4.117 18 C -0.121 4.121 19 C 0.090 3.910 20 N -0.616 5.616 21 C 0.506 3.494 22 O -0.506 6.506 23 C -0.046 4.046 24 C -0.006 4.006 25 C -0.213 4.213 26 C -0.225 4.225 27 C -0.056 4.056 28 O -0.197 6.197 29 H 0.277 0.723 30 H 0.393 0.607 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.344 0.656 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.153 0.847 43 H 0.116 0.884 44 H 0.163 0.837 45 H 0.165 0.835 46 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.196 -24.934 -5.720 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.214 4.214 3 Si 0.816 3.184 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.200 1.200 7 C -0.458 4.458 8 H 0.090 0.910 9 N -0.220 5.220 10 C 0.224 3.776 11 O -0.484 6.484 12 C -0.071 4.071 13 N -0.285 5.285 14 C -0.084 4.084 15 C 0.035 3.965 16 H 0.072 0.928 17 C -0.156 4.156 18 C -0.159 4.159 19 C -0.032 4.032 20 N -0.353 5.353 21 C 0.293 3.707 22 O -0.378 6.378 23 C -0.086 4.086 24 C -0.056 4.056 25 C -0.232 4.232 26 C -0.244 4.244 27 C -0.123 4.123 28 O -0.094 6.094 29 H 0.086 0.914 30 H 0.226 0.774 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.165 0.835 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.171 0.829 43 H 0.134 0.866 44 H 0.181 0.819 45 H 0.183 0.817 46 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 5.790 -24.141 -6.125 25.570 hybrid contribution -0.453 1.548 1.142 1.976 sum 5.337 -22.593 -4.983 23.744 Atomic orbital electron populations 1.69686 1.06784 1.29112 1.50998 1.26023 0.96586 1.02280 0.96550 0.84944 0.77825 0.76930 0.78708 1.19524 1.19187 1.20007 1.19598 0.92410 0.84209 1.49615 0.90979 1.41931 1.09025 1.04679 1.66352 1.20930 0.88514 0.86102 0.82040 1.90578 1.15430 1.87651 1.54742 1.21538 0.94271 0.89734 1.01548 1.60643 1.16123 0.99762 1.52016 1.22596 0.96046 0.88920 1.00790 1.21657 0.89937 0.95216 0.89653 0.92764 1.22651 0.98987 0.91779 1.02139 1.22759 0.99172 0.96660 0.97286 1.22591 1.02725 0.84218 0.93660 1.48420 1.40446 1.20655 1.25789 1.20322 0.81158 0.81275 0.87942 1.90892 1.64814 1.34484 1.47613 1.20159 0.97914 0.92238 0.98254 1.22166 0.95728 0.87180 1.00568 1.21755 0.97484 0.98434 1.05483 1.22081 1.02238 0.95573 1.04474 1.24475 0.87501 0.95637 1.04694 1.83982 1.43022 1.20165 1.62203 0.91393 0.77353 0.89253 0.92910 0.83480 0.90938 0.94056 0.89544 0.88713 0.87462 0.90173 0.88747 0.91009 0.82925 0.86557 0.81914 0.81712 0.76871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.96 13.05 21.66 0.28 -52.68 16 2 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 3 Si 0.99 45.79 29.55 68.60 2.03 47.81 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.33 -20.27 9.68 84.04 0.81 -19.46 16 8 H 0.07 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.58 -33.02 5.29 -306.98 -1.62 -34.65 16 10 C 0.44 23.74 7.82 87.66 0.69 24.42 16 11 O -0.60 -37.80 15.56 -3.09 -0.05 -37.85 16 12 C 0.06 2.53 6.17 85.56 0.53 3.05 16 13 N -0.65 -24.67 2.95 -517.95 -1.53 -26.20 16 14 C 0.05 1.21 5.29 86.30 0.46 1.66 16 15 C 0.14 2.91 3.30 45.31 0.15 3.06 16 16 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 17 C -0.12 -1.29 6.48 31.78 0.21 -1.08 16 18 C -0.12 -0.89 7.09 31.99 0.23 -0.66 16 19 C 0.09 1.02 6.69 86.85 0.58 1.60 16 20 N -0.62 -13.38 3.07 -787.66 -2.42 -15.80 16 21 C 0.51 15.30 7.40 87.66 0.65 15.95 16 22 O -0.51 -21.52 11.93 -3.04 -0.04 -21.56 16 23 C -0.05 -1.10 5.24 29.10 0.15 -0.95 16 24 C -0.01 -0.20 5.81 24.83 0.14 -0.06 16 25 C -0.21 -6.61 10.81 22.19 0.24 -6.37 16 26 C -0.22 -7.15 10.91 22.19 0.24 -6.90 16 27 C -0.06 -1.95 12.09 66.97 0.81 -1.14 16 28 O -0.20 -7.75 10.65 -2.45 -0.03 -7.78 16 29 H 0.28 14.76 8.31 -92.70 -0.77 13.99 16 30 H 0.39 21.25 7.90 -92.71 -0.73 20.51 16 31 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.34 14.91 7.03 -89.70 -0.63 14.28 16 34 H 0.07 1.81 8.04 -2.39 -0.02 1.79 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 0.85 7.78 -2.39 -0.02 0.84 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.09 0.68 7.48 -2.39 -0.02 0.66 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.15 2.19 7.85 -2.39 -0.02 2.17 16 43 H 0.12 2.37 8.14 -2.38 -0.02 2.35 16 44 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 45 H 0.17 4.26 8.06 -2.91 -0.02 4.24 16 46 H 0.21 6.16 8.06 -2.91 -0.02 6.14 16 Total: -1.00 -87.16 382.62 2.63 -84.53 By element: Atomic # 1 Polarization: 51.81 SS G_CDS: -0.35 Total: 51.45 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 6.35 Total: 12.71 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -5.29 Total: -129.32 kcal Atomic # 8 Polarization: -67.08 SS G_CDS: -0.11 Total: -67.19 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -87.16 2.63 -84.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568148179.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.413 kcal (2) G-P(sol) polarization free energy of solvation -87.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds