Wall clock time and date at job start Tue Mar 31 2020 18:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00245 * 2 1 4 4 H 1.48500 * 109.46773 * 269.99647 * 3 2 1 5 5 H 1.48498 * 109.47118 * 29.99632 * 3 2 1 6 6 H 1.48500 * 109.47464 * 149.99614 * 3 2 1 7 7 C 1.38818 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99590 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00159 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00299 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47578 * 184.98166 * 10 9 7 12 12 H 1.09004 * 109.87034 * 55.65836 * 11 10 9 13 13 C 1.54316 * 109.88582 * 294.63956 * 11 10 9 14 14 C 1.55157 * 102.94499 * 218.23296 * 13 11 10 15 15 C 1.54908 * 101.57696 * 35.50178 * 14 13 11 16 16 N 1.47014 * 110.01206 * 176.74945 * 11 10 9 17 17 C 1.34780 * 125.65119 * 298.47285 * 16 11 10 18 18 O 1.21276 * 119.99868 * 4.92311 * 17 16 11 19 19 C 1.50701 * 119.99765 * 184.92690 * 17 16 11 20 20 C 1.53006 * 109.46713 * 179.97438 * 19 17 16 21 21 N 1.46502 * 109.46777 * 180.02562 * 20 19 17 22 22 C 1.34780 * 119.99829 * 180.02562 * 21 20 19 23 23 O 1.21698 * 119.99800 * 359.97438 * 22 21 20 24 24 C 1.46652 * 119.99993 * 180.02562 * 22 21 20 25 25 C 1.36547 * 125.98690 * 179.71377 * 24 22 21 26 26 C 1.40370 * 106.70793 * 179.90832 * 25 24 22 27 27 C 1.35132 * 107.11309 * 0.35180 * 26 25 24 28 28 O 1.33932 * 108.76979 * 359.78161 * 27 26 25 29 29 H 0.97001 * 119.99667 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00012 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46292 * 64.98623 * 10 9 7 32 32 H 1.09002 * 109.47219 * 304.98849 * 10 9 7 33 33 H 1.09000 * 110.72337 * 336.60175 * 13 11 10 34 34 H 1.09012 * 110.71792 * 99.86694 * 13 11 10 35 35 H 1.09000 * 111.00553 * 153.58016 * 14 13 11 36 36 H 1.09001 * 111.00275 * 277.43132 * 14 13 11 37 37 H 1.09003 * 110.36233 * 204.15557 * 15 14 13 38 38 H 1.08995 * 110.46013 * 81.87974 * 15 14 13 39 39 H 1.08995 * 109.47363 * 299.99820 * 19 17 16 40 40 H 1.08994 * 109.47346 * 60.00135 * 19 17 16 41 41 H 1.08994 * 109.47323 * 299.99550 * 20 19 17 42 42 H 1.09000 * 109.46915 * 60.00486 * 20 19 17 43 43 H 0.96997 * 120.00165 * 0.02562 * 21 20 19 44 44 H 1.07999 * 126.64728 * 0.04179 * 25 24 22 45 45 H 1.07994 * 126.44158 * 180.11490 * 26 25 24 46 46 H 1.07999 * 125.61619 * 179.78060 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6569 0.0016 11 6 1.0684 -4.8171 -0.1224 12 1 0.4528 -4.6855 -1.0123 13 6 0.1715 -4.8783 1.1319 14 6 0.0187 -6.4029 1.3759 15 6 1.4135 -6.9269 0.9520 16 7 1.7956 -6.0923 -0.2017 17 6 2.6677 -6.4405 -1.1684 18 8 2.9763 -5.6385 -2.0242 19 6 3.2594 -7.8264 -1.1860 20 6 4.2100 -7.9600 -2.3774 21 7 4.7847 -9.3075 -2.3948 22 6 5.6568 -9.6557 -3.3616 23 8 5.9664 -8.8509 -4.2204 24 6 6.2317 -11.0047 -3.3794 25 6 7.1174 -11.4873 -4.2997 26 6 7.3989 -12.8126 -3.9326 27 6 6.6756 -13.0800 -2.8229 28 8 5.9736 -11.9882 -2.4927 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0016 31 1 2.6166 -3.7538 0.9326 32 1 2.7493 -3.6774 -0.8409 33 1 0.6609 -4.3991 1.9798 34 1 -0.7980 -4.4201 0.9355 35 1 -0.1744 -6.6128 2.4279 36 1 -0.7647 -6.8230 0.7451 37 1 1.3519 -7.9748 0.6583 38 1 2.1301 -6.8027 1.7639 39 1 3.8093 -7.9984 -0.2608 40 1 2.4598 -8.5617 -1.2754 41 1 3.6597 -7.7882 -3.3024 42 1 5.0097 -7.2247 -2.2883 43 1 4.5376 -9.9490 -1.7106 44 1 7.5245 -10.9523 -5.1450 45 1 8.0649 -13.4921 -4.4434 46 1 6.6652 -14.0193 -2.2901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569563760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:32 Heat of formation + Delta-G solvation = -38.552323 kcal Electronic energy + Delta-G solvation = -27873.288286 eV Core-core repulsion = 23765.162798 eV Total energy + Delta-G solvation = -4108.125488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.10684 -40.25804 -39.63193 -37.57150 -35.52652 -34.48692 -33.52311 -32.17050 -31.30093 -31.19475 -29.90043 -28.64709 -25.39169 -24.90793 -23.31605 -22.51945 -22.14060 -21.99971 -20.86811 -20.49911 -19.18908 -18.58017 -17.40761 -16.85369 -16.82586 -16.72655 -16.43112 -15.88438 -15.75530 -14.86865 -14.53673 -14.49976 -14.39222 -13.72661 -13.59279 -13.50931 -13.44941 -13.23661 -13.19006 -13.08743 -12.71579 -12.57589 -12.24996 -12.11815 -11.80349 -11.51874 -11.17454 -10.88200 -10.80820 -10.68765 -10.56393 -10.51943 -10.39154 -10.01179 -9.78458 -9.58993 -9.53988 -9.10500 -8.79699 -8.47850 -6.85493 -5.70848 -2.98683 0.64100 1.91373 2.20857 2.67058 2.69608 2.83253 3.16443 3.49120 3.54184 3.55675 4.19736 4.40674 4.44930 4.49485 4.56491 4.61810 4.67462 4.75249 4.93544 4.98633 5.12544 5.17733 5.31996 5.36573 5.40591 5.43595 5.55394 5.61312 5.63723 5.74432 5.78265 5.85958 5.90202 5.95777 6.04434 6.08253 6.17259 6.35325 6.41979 6.54243 6.85282 7.03687 7.05991 7.62948 7.71851 7.77708 8.25602 8.48411 9.59341 10.15789 10.51456 11.52256 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.001987 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.869591 B =14084.972481 C =15421.237759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.233 4.233 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.145 3.855 11 C 0.130 3.870 12 H 0.076 0.924 13 C -0.122 4.122 14 C -0.135 4.135 15 C 0.099 3.901 16 N -0.612 5.612 17 C 0.528 3.472 18 O -0.522 6.522 19 C -0.148 4.148 20 C 0.132 3.868 21 N -0.721 5.721 22 C 0.602 3.398 23 O -0.512 6.512 24 C -0.079 4.079 25 C -0.120 4.120 26 C -0.225 4.225 27 C -0.008 4.008 28 O -0.165 6.165 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.014 0.986 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.404 0.596 44 H 0.161 0.839 45 H 0.157 0.843 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.541 -32.246 0.658 33.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.364 4.364 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.016 3.984 11 C 0.027 3.973 12 H 0.094 0.906 13 C -0.160 4.160 14 C -0.173 4.173 15 C -0.024 4.024 16 N -0.347 5.347 17 C 0.315 3.685 18 O -0.397 6.397 19 C -0.188 4.188 20 C 0.009 3.991 21 N -0.372 5.372 22 C 0.387 3.613 23 O -0.389 6.389 24 C -0.131 4.131 25 C -0.140 4.140 26 C -0.244 4.244 27 C -0.077 4.077 28 O -0.061 6.061 29 H 0.064 0.936 30 H 0.216 0.784 31 H 0.031 0.969 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.239 0.761 44 H 0.179 0.821 45 H 0.175 0.825 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 7.908 -31.045 -0.240 32.038 hybrid contribution 0.162 0.376 0.319 0.519 sum 8.070 -30.669 0.079 31.713 Atomic orbital electron populations 1.69659 1.05049 1.25536 1.58210 1.24720 0.95559 0.97616 1.03227 0.86167 0.78594 0.83774 0.77555 1.21719 1.21817 1.20819 1.19225 0.91051 0.84023 1.42129 0.91253 1.42206 1.05721 0.99749 1.89620 1.20978 0.93706 0.85086 0.98583 1.21841 0.93394 0.83328 0.98689 0.90551 1.22685 1.00514 0.95035 0.97775 1.22794 0.95889 0.96702 1.01871 1.22336 0.96756 0.94665 0.88626 1.48527 1.43638 1.17985 1.24595 1.19841 0.78752 0.88946 0.80961 1.90808 1.59053 1.52282 1.37589 1.21774 1.00338 0.96203 1.00520 1.21164 0.97025 0.82350 0.98566 1.45866 1.45502 1.15857 1.29972 1.16506 0.79006 0.83738 0.82025 1.90943 1.60674 1.49441 1.37802 1.22112 1.05911 0.90290 0.94741 1.22034 0.97192 0.94985 0.99822 1.21900 1.05516 0.97332 0.99633 1.24433 0.94569 0.90491 0.98248 1.84052 1.55713 1.19861 1.46459 0.93612 0.78367 0.96863 0.94090 0.89870 0.89734 0.89976 0.90787 0.90927 0.91239 0.88277 0.88306 0.89852 0.89760 0.76125 0.82106 0.82508 0.77259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.80 13.06 55.49 0.72 -28.07 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 23.24 29.55 -169.99 -5.02 18.22 16 4 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.23 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.73 -19.20 5.44 -59.91 -0.33 -19.53 16 10 C 0.14 3.18 5.64 -4.04 -0.02 3.16 16 11 C 0.13 2.23 2.99 -66.96 -0.20 2.03 16 12 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 13 C -0.12 -1.72 6.00 -24.90 -0.15 -1.87 16 14 C -0.13 -1.29 7.09 -24.58 -0.17 -1.46 16 15 C 0.10 0.92 6.74 -2.53 -0.02 0.90 16 16 N -0.61 -8.39 3.07 -163.03 -0.50 -8.89 16 17 C 0.53 7.58 7.67 -10.98 -0.08 7.50 16 18 O -0.52 -10.14 14.80 5.56 0.08 -10.06 16 19 C -0.15 -1.31 4.75 -27.88 -0.13 -1.45 16 20 C 0.13 1.44 4.96 -4.04 -0.02 1.42 16 21 N -0.72 -6.47 5.55 -61.62 -0.34 -6.81 16 22 C 0.60 6.90 7.79 -12.86 -0.10 6.80 16 23 O -0.51 -7.87 16.86 5.19 0.09 -7.78 16 24 C -0.08 -0.74 7.13 -36.80 -0.26 -1.01 16 25 C -0.12 -1.02 10.62 -39.39 -0.42 -1.44 16 26 C -0.22 -1.32 10.88 -39.88 -0.43 -1.76 16 27 C -0.01 -0.04 12.08 29.63 0.36 0.32 16 28 O -0.17 -1.22 10.40 4.98 0.05 -1.17 16 29 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.38 10.32 7.39 -40.82 -0.30 10.02 16 31 H 0.01 0.30 8.07 -51.93 -0.42 -0.12 16 32 H 0.04 1.01 6.61 -51.93 -0.34 0.67 16 33 H 0.08 1.27 7.80 -51.93 -0.40 0.87 16 34 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.46 7.47 -51.93 -0.39 0.07 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.62 7.95 -51.93 -0.41 0.21 16 41 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 42 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 43 H 0.40 2.41 8.23 -40.82 -0.34 2.07 16 44 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 46 H 0.21 0.14 8.06 -52.49 -0.42 -0.28 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -37.93 388.74 -8.09 -46.02 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.80 Total: 6.61 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -1.90 Total: 5.61 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -0.44 Total: -63.31 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.22 Total: -19.00 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.93 -8.09 -46.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569563760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.470 kcal (2) G-P(sol) polarization free energy of solvation -37.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds